mRNA_P-wetherbeei_contig5146.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5146.1.1
Unique NamemRNA_P-wetherbeei_contig5146.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5146.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5146contigP-wetherbeei_contig5146:416..1235 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size820
Hectar predicted targeting categoryother localisation
Exons1
Cds size543
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186773.0347643-CDS-P-wetherbeei_contig5146:415..9581683186773.0347643-CDS-P-wetherbeei_contig5146:415..958Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5146 416..958 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186773.046414-UTR-P-wetherbeei_contig5146:958..12351683186773.046414-UTR-P-wetherbeei_contig5146:958..1235Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5146 959..1235 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5146.1.1prot_P-wetherbeei_contig5146.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5146 416..958 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5146.1.1

>prot_P-wetherbeei_contig5146.1.1 ID=prot_P-wetherbeei_contig5146.1.1|Name=mRNA_P-wetherbeei_contig5146.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=181bp
MSTPTPPPREGTASEEKEKRDPEKVNASGMALLDQLLQAGRKAQGRHSIY
QRPGTARHFLHNQYSHLQDVVEEAANRKKRRREEEEAPRRRLLPPASKPP
PRCHQCQRAAPSSNIGAGFIVVAFDLHNCAILLLPLHPNDRRPAVVKVQF
GDAEVTARRCDCSCEVLCNNANALPALREYA
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mRNA from alignment at P-wetherbeei_contig5146:416..1235-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5146.1.1 ID=mRNA_P-wetherbeei_contig5146.1.1|Name=mRNA_P-wetherbeei_contig5146.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=820bp|location=Sequence derived from alignment at P-wetherbeei_contig5146:416..1235- (Phaeothamnion wetherbeei SAG_119_79)
GTTCGCTTGGTCCAAGGTTGGAGAGCGCTAACCTGCTTTCTTTGAAAAAA
CGGAAGTTTCGGTAAACTAAAGACGTCCGCGCGAAAAAGCCGGGATGGAG
CACCCCGATGTAGTGGCACTGCTCACCTTTATTTGGAGGTAATCCTGGAA
CCAGCGATAGAGGGGAAAAGGTAAATCCCGCATTTAGAGTGATTCGCGAC
TTTTTTAGGCGCGAAAAGTGAAAACAAGGCGTGTGACGGAGCGAGGGAGG
TTAAGCAGGGCTGCCAGGACTAAAGAAATGTCTACGCCGACCCCACCACC
TCGAGAAGGCACTGCATCCGAGGAGAAGGAGAAGCGGGACCCGGAAAAGG
TAAACGCTTCCGGCATGGCGCTTCTCGACCAATTGCTGCAGGCGGGGCGC
AAAGCTCAGGGCCGCCACTCCATCTATCAGCGCCCCGGGACGGCGCGCCA
CTTTTTACACAACCAGTACAGTCACCTGCAAGACGTCGTAGAGGAGGCTG
CCAACAGGAAAAAGCGACGACGAGAAGAGGAAGAAGCCCCTCGGCGACGC
CTTCTCCCGCCTGCTTCCAAGCCTCCGCCTCGGTGCCATCAATGCCAGCG
CGCGGCACCATCGAGCAACATTGGAGCTGGCTTCATCGTCGTTGCGTTTG
ATCTGCACAACTGCGCGATCCTGCTTCTCCCGCTCCACCCCAATGATCGC
CGGCCGGCCGTTGTCAAAGTCCAGTTCGGGGACGCGGAAGTGACCGCCAG
GCGATGCGACTGCAGCTGCGAGGTGCTGTGCAATAACGCCAATGCCCTAC
CGGCGCTCCGCGAGTACGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5146:416..1235-

>mRNA_P-wetherbeei_contig5146.1.1 ID=mRNA_P-wetherbeei_contig5146.1.1|Name=mRNA_P-wetherbeei_contig5146.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig5146:416..1235- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTACGCCGACCCCACCACCTCGAGAAGGCACTGCATCCGAGGAGAA
GGAGAAGCGGGACCCGGAAAAGGTAAACGCTTCCGGCATGGCGCTTCTCG
ACCAATTGCTGCAGGCGGGGCGCAAAGCTCAGGGCCGCCACTCCATCTAT
CAGCGCCCCGGGACGGCGCGCCACTTTTTACACAACCAGTACAGTCACCT
GCAAGACGTCGTAGAGGAGGCTGCCAACAGGAAAAAGCGACGACGAGAAG
AGGAAGAAGCCCCTCGGCGACGCCTTCTCCCGCCTGCTTCCAAGCCTCCG
CCTCGGTGCCATCAATGCCAGCGCGCGGCACCATCGAGCAACATTGGAGC
TGGCTTCATCGTCGTTGCGTTTGATCTGCACAACTGCGCGATCCTGCTTC
TCCCGCTCCACCCCAATGATCGCCGGCCGGCCGTTGTCAAAGTCCAGTTC
GGGGACGCGGAAGTGACCGCCAGGCGATGCGACTGCAGCTGCGAGGTGCT
GTGCAATAACGCCAATGCCCTACCGGCGCTCCGCGAGTACGCC
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