mRNA_P-wetherbeei_contig51439.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51439.1.1
Unique NamemRNA_P-wetherbeei_contig51439.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig51439.1.1 vs. uniprot
Match: A0A317GTW6_9PROT (CoA_binding domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A317GTW6_9PROT)

HSP 1 Score: 208 bits (529), Expect = 3.620e-62
Identity = 109/176 (61.93%), Postives = 132/176 (75.00%), Query Frame = 1
Query:   16 FLNPRSIAVVGASERATSSGGAVLRNLRLSGYGGRIVPINPKGGEIDGLKVVPSLKDMQGPVDLVAVLVRPDSILDVVSEAADTGHRNILVLPGGFAAAGDSGRARAIALRELAVARGLTIGGPNCAGVINLLDPKSPFAATFFRAMPRGGPVAMISQSGAIIEEAIDASHAGNIP 543
            FL P S+AVVGA +R TSSGGAVLRNL  SG+ GR+VP+NPKGGE+ GL V  SL ++  P DLV ++VR ++I DV  EAA TGHRN+LVLPGGFA +GD G+ R   LR L+    L IGGPNCAG+INL DP +PFA TF R +P GG VA++SQSGAI EE I ASHA ++P
Sbjct:   13 FLRPSSVAVVGAGDRLTSSGGAVLRNLIRSGFKGRVVPVNPKGGELFGLPVARSLSEVTSPCDLVIIVVRSEAIPDVAREAAATGHRNLLVLPGGFAESGDDGKLRDQELRSLSRDHDLVIGGPNCAGLINLTDPSAPFAGTFLRDLPLGGGVAVVSQSGAIAEEIIAASHAMSVP 188          
BLAST of mRNA_P-wetherbeei_contig51439.1.1 vs. uniprot
Match: A0A5A7N0A5_9PROT (CoA_binding domain-containing protein n=2 Tax=Iodidimonas gelatinilytica TaxID=1236966 RepID=A0A5A7N0A5_9PROT)

HSP 1 Score: 194 bits (494), Expect = 1.670e-59
Identity = 101/181 (55.80%), Postives = 133/181 (73.48%), Query Frame = 1
Query:    1 SAISHFLNPRSIAVVGASERATSSGGAVLRNLRLSGYGGRIVPINPKGGEIDGLKVVPSLKDMQGPVDLVAVLVRPDSILDVVSEAADTGHRNILVLPGGFAAAGDSGRARAIALRELAVARGLTIGGPNCAGVINLLDPKSPFAATFFRAMPRGGPVAMISQSGAIIEEAIDASHAGNIP 543
            S ++ F  PRS+AVVGAS R TSSGGAVL  ++ +GY G++VP+NPKGG + G++ +PSL+ +  PVDLV + +RPD I+D V EAADTGHR+IL+LPGGF  AG+ G+AR   L +LA  +GL I GPNC G+I+L   +S  AATFFR +P GGP+A +SQSGA+ EE I  +   NIP
Sbjct:    8 SDLTPFFAPRSVAVVGASARPTSSGGAVLHMMQKAGYKGKLVPVNPKGGTLLGIEALPSLRALDAPVDLVVIAIRPDFIVDAVREAADTGHRHILILPGGFQEAGEDGQARQAVLDDLAREKGLIIAGPNCGGIIHL-GKESRLAATFFRDLPPGGPLAFVSQSGALAEEVIAHAQIQNIP 187          
BLAST of mRNA_P-wetherbeei_contig51439.1.1 vs. uniprot
Match: A0A1F2ZVF1_9PROT (CoA_binding domain-containing protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1F2ZVF1_9PROT)

HSP 1 Score: 192 bits (489), Expect = 4.500e-56
Identity = 108/185 (58.38%), Postives = 134/185 (72.43%), Query Frame = 1
Query:    7 ISHFLNPRSIAVVGASERATSSGGAVLRNLRLSGYGGRIVPINPKGGEIDGLKVVPSLKDMQGPVDLVAVLVRPDSILDVVSEAADTGHRNILVLPGGFAAAGDSGRARAIALRELAVARGLTIGGPNCAGVINLLDPKSPFAATFFRAMPRGGP------VAMISQSGAIIEEAIDASHAGNIP 543
            +S F  PRS+AVVGA ER+TSSGGA+++ LR +GYGGR+VP+NPKGG I G   V S+  +  PVDL  +++RPD+IL+ V EAAD G RN+L+LPGGFA AG  G AR  AL +LA  RGLTI GPNCAGVI+L DP   FAATF R +P GG       +A ISQSGA+ EE ID ++A N+P
Sbjct:    6 LSPFFAPRSVAVVGAGERSTSSGGAIMQMLRQAGYGGRVVPVNPKGGTIFGYDSVTSIGAIDPPVDLAVIVIRPDAILEAVREAADRGIRNLLILPGGFAEAGPVGVARNEALLKLAADRGLTIAGPNCAGVIHL-DPAWRFAATFLRDLPPGGAAGADNGLAFISQSGALAEEFIDKANARNLP 189          
BLAST of mRNA_P-wetherbeei_contig51439.1.1 vs. uniprot
Match: A0A2E7PL45_9PROT (CoA_binding domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7PL45_9PROT)

HSP 1 Score: 192 bits (487), Expect = 5.800e-56
Identity = 102/176 (57.95%), Postives = 125/176 (71.02%), Query Frame = 1
Query:   16 FLNPRSIAVVGASERATSSGGAVLRNLRLSGYGGRIVPINPKGGEIDGLKVVPSLKDMQGPVDLVAVLVRPDSILDVVSEAADTGHRNILVLPGGFAAAGDSGRARAIALRELAVARGLTIGGPNCAGVINLLDPKSPFAATFFRAMPRGGPVAMISQSGAIIEEAIDASHAGNIP 543
            F  P S+A+VGA ER TSSGGAVLR +  S Y GRIVP+NPKGGEI GL    SL ++  P DL  V++RPD ILDVV EAA TGH+N+++LPGGF  AGD G AR   L   A A G+TI GPNCAG+I+L +  +PFAATF R +P GG +A+ISQSGAI EE I  ++   +P
Sbjct:   10 FFQPESVAIVGAGERLTSSGGAVLRTMIASDYAGRIVPVNPKGGEILGLPAATSLSELDSPADLAVVVIRPDLILDVVDEAAATGHKNLMILPGGFREAGDEGVAREAELLRKADAAGITIFGPNCAGIIHLAE-GAPFAATFLRDLPPGGGIAVISQSGAITEEIIAKANQDRLP 184          
BLAST of mRNA_P-wetherbeei_contig51439.1.1 vs. uniprot
Match: A0A521L187_9HYPH (CoA_binding domain-containing protein n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521L187_9HYPH)

HSP 1 Score: 192 bits (487), Expect = 8.520e-56
Identity = 106/183 (57.92%), Postives = 133/183 (72.68%), Query Frame = 1
Query:    7 ISHFLNPRSIAVVGASERATSSGGAVLRNLRLSGYGGRIVPINPKGGEIDGLKVVPSLKDMQGPVDLVAVLVRPDSILDVVSEAADTGHRNILVLPGGFAAAGDSGRARAIALRELAVARGLTIGGPNCAGVINLLDPKSPFAATFFRAMP----RGGPVAMISQSGAIIEEAIDASHAGNIP 543
            +S F  P SIA+VGA ERATSSGGAV++ LR +GYGGR+VP+NPKGG I G + V S+  M  PVDL  +++RPD+IL+ V EAAD G RN+L+LPGGFA AG SG AR  AL ++A  R LTI GPNCAG+I+L DP   FAATF R +P     G  +A +SQSGA+ EE ID ++A N+P
Sbjct:    7 LSPFFAPDSIAIVGAGERATSSGGAVMQMLRQAGYGGRVVPVNPKGGTIFGYESVTSIGAMDQPVDLAVIVIRPDAILEAVGEAADRGIRNLLILPGGFAEAGPSGVARNDALLKIAAERNLTIAGPNCAGLIHL-DPAKRFAATFLRDLPPGSRAGNGLAFVSQSGALAEEFIDKANARNLP 188          
BLAST of mRNA_P-wetherbeei_contig51439.1.1 vs. uniprot
Match: A0A537MPD3_9PROT (CoA_binding domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537MPD3_9PROT)

HSP 1 Score: 191 bits (485), Expect = 1.830e-55
Identity = 104/182 (57.14%), Postives = 134/182 (73.63%), Query Frame = 1
Query:    7 ISHFLNPRSIAVVGASERATSSGGAVLRNLRLSGYGGRIVPINPKGGEIDGLKVVPSLKDMQGPVDLVAVLVRPDSILDVVSEAADTGHRNILVLPGGFAAAGDSGRARAIALRELAVARGLTIGGPNCAGVINLLDPKSPFAATFFRAMPRGGP---VAMISQSGAIIEEAIDASHAGNIP 543
            +S F  PRSIA+VGA ERATSSGGAV++ L+ + YGGR+VP+NPKGG I G + V  +  +  PVDL  +++RPD+ILD V+E AD G RN+LVLPGGFA AG +G AR  AL +LA  RGLTI GPNCAG+++L DP   FAATF RA+P G     +A ISQSGA+ EE +D ++A ++P
Sbjct:    5 LSPFFAPRSIAIVGAGERATSSGGAVMQMLQRAAYGGRVVPVNPKGGTIFGYEAVTGIGVIDPPVDLAVIVIRPDAILDAVAECADRGIRNLLVLPGGFAEAGPAGVARNTALLKLAADRGLTIAGPNCAGIVHL-DPAWRFAATFLRALPPGAEANGLAFISQSGALAEEFVDKANARSLP 185          
BLAST of mRNA_P-wetherbeei_contig51439.1.1 vs. uniprot
Match: A0A1E4HTN6_9PROT (CoA_binding domain-containing protein n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1E4HTN6_9PROT)

HSP 1 Score: 191 bits (484), Expect = 2.740e-55
Identity = 104/185 (56.22%), Postives = 133/185 (71.89%), Query Frame = 1
Query:    7 ISHFLNPRSIAVVGASERATSSGGAVLRNLRLSGYGGRIVPINPKGGEIDGLKVVPSLKDMQGPVDLVAVLVRPDSILDVVSEAADTGHRNILVLPGGFAAAGDSGRARAIALRELAVARGLTIGGPNCAGVINLLDPKSPFAATFFRAMPRGG------PVAMISQSGAIIEEAIDASHAGNIP 543
            +S F  P S+AVVGA ER TSSGGAV++ LR +GYGGR+VP+NP+GG I G + V SL  +  PVDL  +++RPD+ILD V+EAAD G RN+L+LPGGFA AG +G AR  AL +LA  RGLT+ GPNCAG+++L DP   FAATF R +P G        +A ISQSGA+ EE ID ++A  +P
Sbjct:    8 LSQFFAPSSVAVVGAGERPTSSGGAVMQMLRQAGYGGRVVPVNPRGGSIFGYESVTSLSAIDQPVDLAVIVIRPDAILDAVAEAADRGIRNLLILPGGFAEAGPAGVARNEALLKLAAQRGLTVAGPNCAGIVHL-DPARRFAATFLRDLPPGNIAGAGHGLAFISQSGALAEEFIDKANARGLP 191          
BLAST of mRNA_P-wetherbeei_contig51439.1.1 vs. uniprot
Match: A0A2E7I1M5_9PROT (CoA_binding domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E7I1M5_9PROT)

HSP 1 Score: 189 bits (479), Expect = 8.900e-55
Identity = 102/176 (57.95%), Postives = 123/176 (69.89%), Query Frame = 1
Query:   16 FLNPRSIAVVGASERATSSGGAVLRNLRLSGYGGRIVPINPKGGEIDGLKVVPSLKDMQGPVDLVAVLVRPDSILDVVSEAADTGHRNILVLPGGFAAAGDSGRARAIALRELAVARGLTIGGPNCAGVINLLDPKSPFAATFFRAMPRGGPVAMISQSGAIIEEAIDASHAGNIP 543
            F  P S+AVVGA ER TSSGGAVLRNL  S Y G IVP+NPKGGEI GL    SL ++Q P DL  V++RPD ILD+V EAA T H+N+++LPGGF  AG  G AR   L   A A G+TI GPNCAG+I+L +  +PFAATF R +P GG +A ISQSGAI EE I  ++   +P
Sbjct:   10 FFQPESVAVVGAGERLTSSGGAVLRNLIASNYAGPIVPVNPKGGEILGLPAATSLSELQRPADLAVVVIRPDFILDIVDEAAATNHKNLMILPGGFREAGAEGIAREAELLRKADAAGITIFGPNCAGIIHLAE-STPFAATFLRDLPPGGGIATISQSGAITEEIIAKANINRLP 184          
BLAST of mRNA_P-wetherbeei_contig51439.1.1 vs. uniprot
Match: A0A061QFK7_9PROT (CoA_binding domain-containing protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A061QFK7_9PROT)

HSP 1 Score: 186 bits (471), Expect = 1.360e-53
Identity = 99/179 (55.31%), Postives = 126/179 (70.39%), Query Frame = 1
Query:    7 ISHFLNPRSIAVVGASERATSSGGAVLRNLRLSGYGGRIVPINPKGGEIDGLKVVPSLKDMQGPVDLVAVLVRPDSILDVVSEAADTGHRNILVLPGGFAAAGDSGRARAIALRELAVARGLTIGGPNCAGVINLLDPKSPFAATFFRAMPRGGPVAMISQSGAIIEEAIDASHAGNIP 543
            +S F  PRS+A+VGAS R TSSGGA+L  +  +G+ G + PINPKGGE+ G + +P L+ +  PVDLV + +RPD ILD V+EAADTGH+ IL+LPGGFA AGD G  R  AL  LA    L I GPNC G+I+L D ++  AATFFR +P GGP+A ISQSGA+ EE I  + A  +P
Sbjct:   10 LSAFFAPRSVAIVGASARPTSSGGAILHMMEEAGFAGALYPINPKGGEMYGRQALPDLRALPSPVDLVVIAIRPDFILDAVTEAADTGHKAILILPGGFAEAGDEGAERQAALDALAEKHDLIIAGPNCGGIISLGD-QTRLAATFFRDLPPGGPIAFISQSGALAEEMIAHAVACRVP 187          
BLAST of mRNA_P-wetherbeei_contig51439.1.1 vs. uniprot
Match: A0A1Y5RHF5_9PROT (Succinyl-CoA synthetase subunit alpha n=1 Tax=Oceanibacterium hippocampi TaxID=745714 RepID=A0A1Y5RHF5_9PROT)

HSP 1 Score: 184 bits (468), Expect = 3.870e-53
Identity = 95/167 (56.89%), Postives = 119/167 (71.26%), Query Frame = 1
Query:   16 FLNPRSIAVVGASERATSSGGAVLRNLRLSGYGGRIVPINPKGGEIDGLKVVPSLKDMQGPVDLVAVLVRPDSILDVVSEAADTGHRNILVLPGGFAAAGDSGRARAIALRELAVARGLTIGGPNCAGVINLLDPKSPFAATFFRAMPRGGPVAMISQSGAIIEEAI 516
            F  PRS+AVVGA ERATSSGGAVLRNLR+ GY G I+P+NPKGG I GL V  SL+D+  P DL  +++RPD I + V +AA + HRN+L+LPGGF  +G  G AR   +R +A   G+ I GPNCAG+I++  P+  F  TF R  P GG +AMISQSGA+ EEAI
Sbjct:    8 FFEPRSVAVVGAGERATSSGGAVLRNLRIGGYSGEIIPVNPKGGTILGLPVKASLRDLAEPADLAIIVIRPDLIPEAVEDAAASDHRNLLILPGGFTESGPEGIARDKQVRAIAARAGIRIAGPNCAGIIHI-GPRMKFGGTFLRDFPPGGSIAMISQSGALAEEAI 173          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51439.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A317GTW6_9PROT3.620e-6261.93CoA_binding domain-containing protein n=1 Tax=Prot... [more]
A0A5A7N0A5_9PROT1.670e-5955.80CoA_binding domain-containing protein n=2 Tax=Iodi... [more]
A0A1F2ZVF1_9PROT4.500e-5658.38CoA_binding domain-containing protein n=2 Tax=Alph... [more]
A0A2E7PL45_9PROT5.800e-5657.95CoA_binding domain-containing protein n=1 Tax=Rhod... [more]
A0A521L187_9HYPH8.520e-5657.92CoA_binding domain-containing protein n=1 Tax=Reyr... [more]
A0A537MPD3_9PROT1.830e-5557.14CoA_binding domain-containing protein n=1 Tax=Alph... [more]
A0A1E4HTN6_9PROT2.740e-5556.22CoA_binding domain-containing protein n=3 Tax=Alph... [more]
A0A2E7I1M5_9PROT8.900e-5557.95CoA_binding domain-containing protein n=1 Tax=Alph... [more]
A0A061QFK7_9PROT1.360e-5355.31CoA_binding domain-containing protein n=2 Tax=Alph... [more]
A0A1Y5RHF5_9PROT3.870e-5356.89Succinyl-CoA synthetase subunit alpha n=1 Tax=Ocea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51439contigP-wetherbeei_contig51439:3..545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1205680.CAKO01000029_gene5182
PFAMsCoA_binding_2,Succ_CoA_lig
Model size543
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.37e-54
EggNOG OGsCOG1042@1|root,COG1042@2|Bacteria,1MW98@1224|Proteobacteria,2TR24@28211|Alphaproteobacteria,2JPV8@204441|Rhodospirillales
DescriptionCOG1042 Acyl-CoA synthetase (NDP forming)
Cds size543
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186772.5727563-CDS-P-wetherbeei_contig51439:2..5451683186772.5727563-CDS-P-wetherbeei_contig51439:2..545Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51439 3..545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51439.1.1prot_P-wetherbeei_contig51439.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51439 3..545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51439.1.1

>prot_P-wetherbeei_contig51439.1.1 ID=prot_P-wetherbeei_contig51439.1.1|Name=mRNA_P-wetherbeei_contig51439.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=181bp
SAISHFLNPRSIAVVGASERATSSGGAVLRNLRLSGYGGRIVPINPKGGE
IDGLKVVPSLKDMQGPVDLVAVLVRPDSILDVVSEAADTGHRNILVLPGG
FAAAGDSGRARAIALRELAVARGLTIGGPNCAGVINLLDPKSPFAATFFR
AMPRGGPVAMISQSGAIIEEAIDASHAGNIP
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mRNA from alignment at P-wetherbeei_contig51439:3..545-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51439.1.1 ID=mRNA_P-wetherbeei_contig51439.1.1|Name=mRNA_P-wetherbeei_contig51439.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig51439:3..545- (Phaeothamnion wetherbeei SAG_119_79)
TCTGCGATCAGCCATTTCCTCAATCCGCGCAGCATCGCGGTAGTGGGTGC GAGCGAGCGTGCGACGAGTTCCGGCGGCGCCGTCCTGCGCAATCTGCGCC TGTCGGGCTATGGCGGGCGTATCGTGCCGATCAATCCCAAGGGCGGTGAA ATCGACGGACTGAAAGTCGTGCCGTCACTGAAAGATATGCAGGGCCCGGT CGATCTTGTCGCGGTGCTGGTACGGCCCGACAGCATTCTCGACGTGGTCA GCGAAGCGGCCGATACCGGTCACCGCAATATCCTTGTCCTGCCCGGTGGA TTTGCCGCAGCGGGCGACAGCGGGCGCGCGCGCGCCATTGCCCTGCGCGA GCTTGCGGTTGCGCGCGGACTGACGATCGGCGGACCAAATTGCGCCGGCG TGATCAATCTGCTCGACCCCAAGTCGCCGTTCGCCGCAACATTTTTCCGC GCCATGCCCAGAGGCGGGCCGGTGGCAATGATCTCGCAGTCGGGCGCGAT CATCGAAGAGGCGATCGATGCCAGTCATGCCGGCAACATCCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51439:3..545-

>mRNA_P-wetherbeei_contig51439.1.1 ID=mRNA_P-wetherbeei_contig51439.1.1|Name=mRNA_P-wetherbeei_contig51439.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig51439:3..545- (Phaeothamnion wetherbeei SAG_119_79)
TCTGCGATCAGCCATTTCCTCAATCCGCGCAGCATCGCGGTAGTGGGTGC
GAGCGAGCGTGCGACGAGTTCCGGCGGCGCCGTCCTGCGCAATCTGCGCC
TGTCGGGCTATGGCGGGCGTATCGTGCCGATCAATCCCAAGGGCGGTGAA
ATCGACGGACTGAAAGTCGTGCCGTCACTGAAAGATATGCAGGGCCCGGT
CGATCTTGTCGCGGTGCTGGTACGGCCCGACAGCATTCTCGACGTGGTCA
GCGAAGCGGCCGATACCGGTCACCGCAATATCCTTGTCCTGCCCGGTGGA
TTTGCCGCAGCGGGCGACAGCGGGCGCGCGCGCGCCATTGCCCTGCGCGA
GCTTGCGGTTGCGCGCGGACTGACGATCGGCGGACCAAATTGCGCCGGCG
TGATCAATCTGCTCGACCCCAAGTCGCCGTTCGCCGCAACATTTTTCCGC
GCCATGCCCAGAGGCGGGCCGGTGGCAATGATCTCGCAGTCGGGCGCGAT
CATCGAAGAGGCGATCGATGCCAGTCATGCCGGCAACATCCCG
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