mRNA_P-wetherbeei_contig5140.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5140.1.2
Unique NamemRNA_P-wetherbeei_contig5140.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5140.1.2 vs. uniprot
Match: D7G7W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7W5_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.550e-20
Identity = 58/116 (50.00%), Postives = 82/116 (70.69%), Query Frame = 2 
Query:  392 LDPDRMLKVSTFLKSQIAESELLAGVAGPAAAAMLLRELLENRETA-AVGELALYWAARARIEENSGAFTAAQSLLNEGEVFLTVPTQQKVLEMVVAAFKKRMDRRDAGDISRLLD 736
            LD  R  +VS +LKSQI+E+ +L  +AG  AA  LL +LL        VGELALYWAARA++EE++G +  A+ LL++GE ++++PTQQKV+  V+AAF+ RM+ R   DI RLL+
Sbjct:  169 LDSARTKEVSDYLKSQISEANMLLEIAGVDAARTLLGDLLSCAGAGRGVGELALYWAARAKLEEDAGMYLEARKLLDDGEAYISMPTQQKVMAKVMAAFEGRMNARAEADIDRLLE 284
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BLAST of mRNA_P-wetherbeei_contig5140.1.2 vs. uniprot
Match: A0A6H5L268_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L268_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 2.630e-20
Identity = 59/116 (50.86%), Postives = 83/116 (71.55%), Query Frame = 2 
Query:  392 LDPDRMLKVSTFLKSQIAESELLAGVAGPAAAAMLLRELLENRETA-AVGELALYWAARARIEENSGAFTAAQSLLNEGEVFLTVPTQQKVLEMVVAAFKKRMDRRDAGDISRLLD 736
            LD  R  +VS +LKSQI+E+ +L  +AG  AA  LL +LL +      VGELALYWAARA++EE++G +  A+ LL++GE ++++PTQQKV+  VVAAF+ RM+ R   DI RLL+
Sbjct:  168 LDSARTKEVSDYLKSQISEANMLLEIAGVDAARTLLGDLLYSAGGGRGVGELALYWAARAKLEEDAGMYLEARKLLDDGEAYISMPTQQKVMAKVVAAFEGRMNARAEADIDRLLE 283
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5140.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7W5_ECTSI1.550e-2050.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L268_9PHAE2.630e-2050.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5140contigP-wetherbeei_contig5140:2..3147 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1694
Hectar predicted targeting categoryother localisation
Exons7
Cds size1395
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5140.1.2prot_P-wetherbeei_contig5140.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5140 60..2906 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186772.2355587-UTR-P-wetherbeei_contig5140:1..591683186772.2355587-UTR-P-wetherbeei_contig5140:1..59Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5140 2..59 -
1683186772.3093138-UTR-P-wetherbeei_contig5140:2906..31471683186772.3093138-UTR-P-wetherbeei_contig5140:2906..3147Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5140 2907..3147 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186772.2454302-CDS-P-wetherbeei_contig5140:59..1211683186772.2454302-CDS-P-wetherbeei_contig5140:59..121Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5140 60..121 -
1683186772.2565372-CDS-P-wetherbeei_contig5140:310..4761683186772.2565372-CDS-P-wetherbeei_contig5140:310..476Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5140 311..476 -
1683186772.2702124-CDS-P-wetherbeei_contig5140:771..13061683186772.2702124-CDS-P-wetherbeei_contig5140:771..1306Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5140 772..1306 -
1683186772.278239-CDS-P-wetherbeei_contig5140:1672..18751683186772.278239-CDS-P-wetherbeei_contig5140:1672..1875Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5140 1673..1875 -
1683186772.2860403-CDS-P-wetherbeei_contig5140:2131..22241683186772.2860403-CDS-P-wetherbeei_contig5140:2131..2224Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5140 2132..2224 -
1683186772.2938938-CDS-P-wetherbeei_contig5140:2444..26061683186772.2938938-CDS-P-wetherbeei_contig5140:2444..2606Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5140 2445..2606 -
1683186772.3016148-CDS-P-wetherbeei_contig5140:2732..29061683186772.3016148-CDS-P-wetherbeei_contig5140:2732..2906Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5140 2733..2906 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5140.1.2

>prot_P-wetherbeei_contig5140.1.2 ID=prot_P-wetherbeei_contig5140.1.2|Name=mRNA_P-wetherbeei_contig5140.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=465bp
MRVAGASVARPREVAKPGAPKPLTEQKSVVAAGSTGAASRRASMSAGNAA
LDPDRMLKVSTFLKSQIAESELLAGVAGPAAAAMLLRELLENRETAAVGE
LALYWAARARIEENSGAFTAAQSLLNEGEVFLTVPTQQKVLEMVVAAFKK
RMDRRDAGDISRLLDGGHHPLPAGGAATGAFGGGAASAAATVGSGGSGCS
GSGGRQSDMYRYTPADVSIDGSAGVDGVGWTKKALRFLVSPPAGAPGAAG
GMSPGANDGPEEDLAAYLGCGDSRASPLHGAGAGKTSGGGAFDGGHAAAS
IAAEDISMAASPFADAGIAVRPSAAVSSPRSNDDAGTVASAPEPAVVTAG
DEMPPPEPRPSQKRKGTPYPTRSTKRRSSHSAEKRKPAEHYPGMALLSAA
LQDGRGDDEEEEEENGSKGRFTAMLSGSGPDCKAAPIRRSRRVAANSASK
TPSPMRRELEAMFS*
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mRNA from alignment at P-wetherbeei_contig5140:2..3147-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5140.1.2 ID=mRNA_P-wetherbeei_contig5140.1.2|Name=mRNA_P-wetherbeei_contig5140.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3146bp|location=Sequence derived from alignment at P-wetherbeei_contig5140:2..3147- (Phaeothamnion wetherbeei SAG_119_79)
CAAGCAACAGAAGAAGGCAGGAGAGAAGATCCAGGCAAAGCCTTTAGCTC
GCGCACCTCTCGGCAAGGGGAGCTCGGCGGCAGGGAACCATGCATCGCAG
TTGCAACCTGTAAAGGGCGCGCAGAAGGCGCCGGCAAAGGTCCAGCAGCA
GAAGAACAAGAGAAGCGGAATCGACGAGAACCGCGTCAAGGAGGCCGGTG
AGCGATGCGTGGGCCTCGGCAGTCCGATTGAACGCCTGAAGATGAGGGTG
GCCGGAGCTAGCGTTGCGAGGCCAAGAGAGGTGGCGAAGCCCGGGGCACC
CAAGCCGCTGACTGAGCAAAAAAGCGTCGTCGCGGCGGGGAGCACGGGGG
CAGCTTCCCGCCGCGCGTCGATGTCAGCCGGGAACGCAGCACTCGACCCG
GACCGCATGCTAAAGGTAAGATTGGAGGAGATAGTGAACCTTCGGCAGGC
ATGATGTGTGATCAATCATACAGAAGGAACAGATTTTGGCGTCCGCATGA
CCAACCTTTCCCCTCGCGCGCCTGGCGGTCGTTGGCTGCAGGTGTCGACG
TTCCTCAAGTCGCAAATCGCCGAGTCGGAGCTGCTCGCCGGCGTGGCGGG
GCCTGCTGCGGCCGCCATGCTGCTGCGGGAGCTGCTGGAGAACCGCGAGA
CCGCCGCCGTCGGAGAGCTCGCGCTCTACTGGGCCGCGCGCGCGCGCATC
GAGGTAAGGGCCGCCGTGCGGTTGAAGTTTACGGCTCTGGCTTGGAAGCC
CGCCCAGTTCACGTGAACGTGCAGGCGTTGCTGTTGCACTGTTTTATTTT
GCGACTTTCAAGGCTTTTGGAATTATTCGCGTTTCTCAAGCTCCACGCCC
GCCGCCGCCTGCCGTGCTGTTTGTGTGCTGCCTTTGCGTTTTGCCTGCTT
TGTCTCTGTCCATGTCGGAGCAGGAGAACTCGGGGGCCTTCACAGCGGCG
CAGTCGCTTCTCAACGAGGGGGAAGTTTTCCTGACCGTCCCTACGCAGCA
AAAGGTTCTTGAAATGGTGAGCGCGGCTACGTTGGACGCTTGGTTTCCCG
TGAAAGGCTAGACGGTCTGCATGGATGCATCCCGGCACAAGTTGTAGGCA
ACAGCGACCCTTTTTTGCGCTGAAGAGCGCTTCCACCCGACCATCGGCAT
AGTATGAAAGCAGTTGCATAAGTTCCAGTGCACGCCGTCTTCCCCGATAA
ACATGCACACAATTCTCTGCCGCTGAAAGCCAGAACGGATGCCCGAATCG
ATCGATCCATTTTCCCTGCCAGGTCGTGGCGGCCTTCAAGAAGCGCATGG
ACAGGCGCGACGCCGGCGACATCAGCCGCCTCCTTGATGGCGGTCACCAT
CCTCTGCCAGCCGGCGGTGCCGCCACCGGAGCTTTCGGAGGAGGAGCTGC
ATCGGCAGCGGCGACGGTAGGAAGCGGCGGGAGCGGCTGCAGCGGCAGCG
GCGGGCGACAGTCCGACATGTACAGGTACAGTAAACCTGCTACGACTCCA
GGACGCGCTGCTGCACCGCGGAGGCATCGGTTGCTGACGCCCGAAGTCGC
TCGTCGCGTCGCTTTCTCCATTCGGAACTAGTCGAAGAAAGGCGCCGACC
TCGCAGACGACGTGCCCAGAGCCTGCCTGTCTCACACCCACGCAGCGCCA
CCGTGCCTAGCGCCTGTCTTACGCCCATGCGGCTCCAAAAATAAGGAGGG
CGCCTCCATTGTGTGAGCAGACGTTTTCGATAACGCGTGGCAGAAAAAAA
TCGAGGCCGCTCTTAGGGCCGTTCGTTTACAACTACTGTACATGTCTCAT
TTCCTTAGCTAAGAAGTTATTCTTTGCCATGCTTTCTTCAGATACACCCC
GGCCGATGTGAGCATTGATGGTAGCGCGGGAGTGGACGGCGTCGGGTGGA
CGAAGAAAGCTTTGAGGTTCCTCGTCTCGCCACCCGCCGGTGCACCGGGC
GCAGCAGGCGGCATGTCGCCGGGCGCCAACGATGGACCGGAGGAAGACCT
GGCAGCCTACCTCGGGTGCGGCGACAGTCGCGCCTCACCGCTGCACGGAG
CTGGTGCCGGAAAAACCTCCGGCGGCGGTGCGTTTGACGGCGGCCATGCC
GCCGCCTCCATCGCTGCCGAAGACATCAGCATGGCGGCGTCGCCCTTCGC
TGACGCCGGCATAGCAGTCAGGCCGTCTGCAGCGGTATCATCGCCACGCT
CCAACGATGACGCTGGGACGGTGGCTTCGGCGCCGGAGCCGGCCGTGGTG
ACTGCGGGGGACGAAATGCCGCCGCCCGAACCGCGGCCTTCGCAGAAGCG
CAAAGGCACGCCGTACCCGACGCGGTCCACCAAGCGGCGCAGCAGCCATT
CCGCGGAGAAACGCAAACCGGCAGAGGTTGGTGGATGTTTGCATGGTGAA
GCCGCTGTTACAAGGGGACCTTAAATTGCCGCAGCGGCCGGAAAGCGAAC
TGAGCCGTGGCTGGCGTTTTCTTCATGCTTTGCGCTGGCTGCTTTTGGCA
AGTAGTCGTCAAAATCGTTTCTGTTTTGGCGGGCGGCAGCCAGAACCAGC
GTTTATCGGCATGCTTTGTCGCGCCAGGCAGACCTGTCTCTTTCTTCTAG
TACAATCCCTTTTTGAATCGAAGCGATTCCCCGCTCAATCCTGCCCAACT
GGCATCCGAACGCTGACGCAGCACTACCCCGGGATGGCGCTACTCAGCGC
GGCGCTCCAAGACGGCCGTGGCGATGACGAGGAGGAGGAAGAGGAGAATG
GTAGCAAGGGGAGGTTCACCGCGATGCTTTCGGGCTCGGGCCCGGATTGC
AAAGCCGCCCCCATCCGCCGGTCCCGCCGCGTCGCCGGTGAGTCGAAAAC
CCGGTGTGACCTCGTCTATCTTGCCTGCGACCTCTAGACAAACAGATTGC
GACTCGCCAGGAAGCTTTTGACTTGTTGACGCACTGGAAATTGCATTCAC
TCGCCACATTGATCAGCCTAATCACTTTCCGACGCACCCCTACATTGTGC
TCTTCGCCCGCTTCTTCCCACCGCAGCGAACAGCGCAAGCAAGACGCCGT
CGCCAATGCGGCGCGAGCTCGAGGCGATGTTTTCATGACTCCAACCATCC
AAGAAGCAGTAGTCTGGGGCCCGCCGGCAGCTTCGACGACCGTCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5140:2..3147-

>mRNA_P-wetherbeei_contig5140.1.2 ID=mRNA_P-wetherbeei_contig5140.1.2|Name=mRNA_P-wetherbeei_contig5140.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1395bp|location=Sequence derived from alignment at P-wetherbeei_contig5140:2..3147- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGGTGGCCGGAGCTAGCGTTGCGAGGCCAAGAGAGGTGGCGAAGCC
CGGGGCACCCAAGCCGCTGACTGAGCAAAAAAGCGTCGTCGCGGCGGGGA
GCACGGGGGCAGCTTCCCGCCGCGCGTCGATGTCAGCCGGGAACGCAGCA
CTCGACCCGGACCGCATGCTAAAGGTGTCGACGTTCCTCAAGTCGCAAAT
CGCCGAGTCGGAGCTGCTCGCCGGCGTGGCGGGGCCTGCTGCGGCCGCCA
TGCTGCTGCGGGAGCTGCTGGAGAACCGCGAGACCGCCGCCGTCGGAGAG
CTCGCGCTCTACTGGGCCGCGCGCGCGCGCATCGAGGAGAACTCGGGGGC
CTTCACAGCGGCGCAGTCGCTTCTCAACGAGGGGGAAGTTTTCCTGACCG
TCCCTACGCAGCAAAAGGTTCTTGAAATGGTCGTGGCGGCCTTCAAGAAG
CGCATGGACAGGCGCGACGCCGGCGACATCAGCCGCCTCCTTGATGGCGG
TCACCATCCTCTGCCAGCCGGCGGTGCCGCCACCGGAGCTTTCGGAGGAG
GAGCTGCATCGGCAGCGGCGACGGTAGGAAGCGGCGGGAGCGGCTGCAGC
GGCAGCGGCGGGCGACAGTCCGACATGTACAGATACACCCCGGCCGATGT
GAGCATTGATGGTAGCGCGGGAGTGGACGGCGTCGGGTGGACGAAGAAAG
CTTTGAGGTTCCTCGTCTCGCCACCCGCCGGTGCACCGGGCGCAGCAGGC
GGCATGTCGCCGGGCGCCAACGATGGACCGGAGGAAGACCTGGCAGCCTA
CCTCGGGTGCGGCGACAGTCGCGCCTCACCGCTGCACGGAGCTGGTGCCG
GAAAAACCTCCGGCGGCGGTGCGTTTGACGGCGGCCATGCCGCCGCCTCC
ATCGCTGCCGAAGACATCAGCATGGCGGCGTCGCCCTTCGCTGACGCCGG
CATAGCAGTCAGGCCGTCTGCAGCGGTATCATCGCCACGCTCCAACGATG
ACGCTGGGACGGTGGCTTCGGCGCCGGAGCCGGCCGTGGTGACTGCGGGG
GACGAAATGCCGCCGCCCGAACCGCGGCCTTCGCAGAAGCGCAAAGGCAC
GCCGTACCCGACGCGGTCCACCAAGCGGCGCAGCAGCCATTCCGCGGAGA
AACGCAAACCGGCAGAGCACTACCCCGGGATGGCGCTACTCAGCGCGGCG
CTCCAAGACGGCCGTGGCGATGACGAGGAGGAGGAAGAGGAGAATGGTAG
CAAGGGGAGGTTCACCGCGATGCTTTCGGGCTCGGGCCCGGATTGCAAAG
CCGCCCCCATCCGCCGGTCCCGCCGCGTCGCCGCGAACAGCGCAAGCAAG
ACGCCGTCGCCAATGCGGCGCGAGCTCGAGGCGATGTTTTCATGA
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