mRNA_P-wetherbeei_contig514.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig514.2.1
Unique NamemRNA_P-wetherbeei_contig514.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig514.2.1 vs. uniprot
Match: A0A836C8P3_9STRA (Fe-S_biosyn domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8P3_9STRA)

HSP 1 Score: 172 bits (437), Expect = 1.140e-51
Identity = 77/100 (77.00%), Postives = 90/100 (90.00%), Query Frame = 2
Query:  320 RAAERIRELMAQCPSAAGVRLGVRRRGCNGFSYTLKFSDDKPAKDEEIADKGVRVFVDPSATFYVVGTVMDWEETELSAEFTFTNPNAKGTCGCGESFNV 619
            RAA+RI+EL+   P   GVRLGV+RRGCNG+SYTL ++D+KPAKDEE+A+KGVRVFVDP ATFY+VGT MDWEETELS+EFTF NPNAKG+CGCGESFNV
Sbjct:    7 RAADRIKELLEAKPGKVGVRLGVKRRGCNGYSYTLNYADEKPAKDEEVAEKGVRVFVDPLATFYIVGTTMDWEETELSSEFTFKNPNAKGSCGCGESFNV 106          
BLAST of mRNA_P-wetherbeei_contig514.2.1 vs. uniprot
Match: K3WSX7_GLOUD (Fe-S_biosyn domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSX7_GLOUD)

HSP 1 Score: 161 bits (407), Expect = 1.940e-46
Identity = 75/115 (65.22%), Postives = 92/115 (80.00%), Query Frame = 2
Query:  275 RRRLRERPPSIQLTDRAAERIRELMAQCPSAAGVRLGVRRRGCNGFSYTLKFSDDKPAKDEEIADKGVRVFVDPSATFYVVGTVMDWEETELSAEFTFTNPNAKGTCGCGESFNV 619
            RRRLRE PP ++LTD AAERIREL+   P A G+RLGVR RGCNG SYT+ ++D K   +EE+ +KGVRVFV+P A F+VVGT MD++ T +S+EF F NPNAKG+CGCGESFNV
Sbjct:   43 RRRLRELPPPLKLTDAAAERIRELLDGKPDAIGIRLGVRTRGCNGLSYTMNYADKKEKLEEEVCEKGVRVFVEPKALFHVVGTTMDFQTTPVSSEFVFENPNAKGSCGCGESFNV 157          
BLAST of mRNA_P-wetherbeei_contig514.2.1 vs. uniprot
Match: A0A7S2XY71_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY71_9STRA)

HSP 1 Score: 159 bits (403), Expect = 9.360e-46
Identity = 73/114 (64.04%), Postives = 91/114 (79.82%), Query Frame = 2
Query:  278 RRLRERPPSIQLTDRAAERIRELMAQCPSAAGVRLGVRRRGCNGFSYTLKFSDDKPAKDEEIADKGVRVFVDPSATFYVVGTVMDWEETELSAEFTFTNPNAKGTCGCGESFNV 619
            R  R  PP I++T++AAERI+EL++      G+RLGV+RRGCNG SYT+ + D+ P KDEE+ D GVRVFV+P A F+VVGT MD+EETELS+EFTF NPNAKG+CGCGESFN 
Sbjct:   50 RMKRAMPPPIKITEKAAERIKELLSGQDDKIGIRLGVKRRGCNGLSYTMNYVDEAPKKDEEVQDHGVRVFVEPMALFHVVGTTMDFEETELSSEFTFKNPNAKGSCGCGESFNT 163          
BLAST of mRNA_P-wetherbeei_contig514.2.1 vs. uniprot
Match: H3HBE5_PHYRM (Fe-S_biosyn domain-containing protein n=33 Tax=Peronosporaceae TaxID=4777 RepID=H3HBE5_PHYRM)

HSP 1 Score: 158 bits (400), Expect = 1.560e-45
Identity = 75/123 (60.98%), Postives = 95/123 (77.24%), Query Frame = 2
Query:  257 ADHA--PRRRRLRERPPSIQLTDRAAERIRELMAQCPSAAGVRLGVRRRGCNGFSYTLKFSDDKPAKDEEIADKGVRVFVDPSATFYVVGTVMDWEETELSAEFTFTNPNAKGTCGCGESFNV 619
            A+HA  P RRRLRE PP + LTD AA RI+EL+A  P A G+RLGV+ RGCNG SYT+ ++D K   +EE++  G+RVFV+P A F+VVGT MD++ T +S+EF F NPNAKG+CGCGESFNV
Sbjct:   24 AEHATPPTRRRLRELPPPLNLTDAAAARIKELLANKPDAIGIRLGVKTRGCNGLSYTMNYADKKEKMEEEVSKNGIRVFVEPKALFHVVGTTMDFQITPVSSEFVFENPNAKGSCGCGESFNV 146          
BLAST of mRNA_P-wetherbeei_contig514.2.1 vs. uniprot
Match: D7FWL5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWL5_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 5.100e-45
Identity = 98/200 (49.00%), Postives = 116/200 (58.00%), Query Frame = 2
Query:  146 RALRGTAPPSEPSY--GTRVRRLSSAAAVV-----EEDHADDASADHAPRRRRL-RERPPSIQLTDRAAERIRELMAQCPSAAGVRLGVRRRGCNGFSYTLKFSDDKPAKDEEIADKG----------------------------------VRVFVDPSATFYVVGTVMDWEETELSAEFTFTNPNAKGTCGCGESFNV 619
            RA+RG A     +   G  V+ L+SAAA       E     +A A   PRRRRL R+RP  I LTDRAA  +  L+A  P   GVRLGV+RRGCNG SYTLK++D+KP  DEE+  +G                                  V++FVDP AT Y+ GTVMDWEETELS+EFTFTNPNAKG CGCGESFNV
Sbjct:   69 RAIRGFASAVATTLEDGGAVQELASAAAAEATRKEEVRPQQEADASPKPRRRRLLRDRPAPITLTDRAASHLVSLVANKPGKVGVRLGVKRRGCNGMSYTLKYADEKPKGDEEVVVRGGRPQTGQREHGEGEREGAXXXXXXXXXXXGNGDGVKLFVDPMATLYIAGTVMDWEETELSSEFTFTNPNAKGECGCGESFNV 268          
BLAST of mRNA_P-wetherbeei_contig514.2.1 vs. uniprot
Match: A0A484DVJ7_BRELC (Fe-S_biosyn domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DVJ7_BRELC)

HSP 1 Score: 155 bits (391), Expect = 3.340e-44
Identity = 72/115 (62.61%), Postives = 88/115 (76.52%), Query Frame = 2
Query:  275 RRRLRERPPSIQLTDRAAERIRELMAQCPSAAGVRLGVRRRGCNGFSYTLKFSDDKPAKDEEIADKGVRVFVDPSATFYVVGTVMDWEETELSAEFTFTNPNAKGTCGCGESFNV 619
            RR LRE PP + +TD AA RIREL+A  P A G+RLGVR RGCNG SYT+ ++D K   +EE+   GVRVFV+P A F+VVGT MD++ T +S+EFTF NPNAK +CGCGESFNV
Sbjct:   30 RRHLRELPPPLNMTDAAASRIRELLANKPDAIGIRLGVRARGCNGLSYTMNYADKKENMEEEVIKNGVRVFVEPKALFHVVGTTMDFQVTPVSSEFTFENPNAKSSCGCGESFNV 144          
BLAST of mRNA_P-wetherbeei_contig514.2.1 vs. uniprot
Match: A0A6G0WQ08_9STRA (Fe-S_biosyn domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WQ08_9STRA)

HSP 1 Score: 154 bits (389), Expect = 4.600e-44
Identity = 74/114 (64.91%), Postives = 90/114 (78.95%), Query Frame = 2
Query:  278 RRLRERPPSIQLTDRAAERIRELMAQCPSAAGVRLGVRRRGCNGFSYTLKFSDDKPAKDEEIADKGVRVFVDPSATFYVVGTVMDWEETELSAEFTFTNPNAKGTCGCGESFNV 619
            R  RE P +I+LTD AA RI ELMA+ P A G+RLGVR RGC+G SYT+ ++++K   DEE+ DKGVRVF+D  A F+VVGT MD++ T +SAEFTF NPNAKGTCGCGESFNV
Sbjct:   19 RARREIPAAIKLTDAAAARILELMAKQPDAIGIRLGVRTRGCSGLSYTMNYTNEKNKLDEEVRDKGVRVFIDSKALFHVVGTTMDYKITPVSAEFTFENPNAKGTCGCGESFNV 132          
BLAST of mRNA_P-wetherbeei_contig514.2.1 vs. uniprot
Match: W4GE64_9STRA (Fe-S_biosyn domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=W4GE64_9STRA)

HSP 1 Score: 153 bits (386), Expect = 1.430e-43
Identity = 82/141 (58.16%), Postives = 101/141 (71.63%), Query Frame = 2
Query:  200 RRLSSAAAVVEEDHADDASADHAPRRRRLR-ERPPSIQLTDRAAERIRELMAQCPSAAGVRLGVRRRGCNGFSYTLKFSDDKPAKDEEIADKGVRVFVDPSATFYVVGTVMDWEETELSAEFTFTNPNAKGTCGCGESFNV 619
            R  S+AAA V         A  A R  RLR E P +I+LTD AA RI+ELMA  P A G+RLGVR RGC+G SYT+ ++ +K   DEE+A+KGV+VF++  A F+VVGT MD++ T +SAEFTF NPNAKGTCGCGESFNV
Sbjct:    4 RAFSTAAAAV---------ATPAARTSRLRREVPAAIKLTDEAAARIKELMASRPDAIGIRLGVRTRGCSGLSYTMNYATEKQKLDEEVAEKGVKVFIESKALFHVVGTTMDYKITPVSAEFTFENPNAKGTCGCGESFNV 135          
BLAST of mRNA_P-wetherbeei_contig514.2.1 vs. uniprot
Match: A0A0P1B349_PLAHL (Iron-sulfur protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B349_PLAHL)

HSP 1 Score: 152 bits (383), Expect = 5.880e-43
Identity = 70/115 (60.87%), Postives = 89/115 (77.39%), Query Frame = 2
Query:  275 RRRLRERPPSIQLTDRAAERIRELMAQCPSAAGVRLGVRRRGCNGFSYTLKFSDDKPAKDEEIADKGVRVFVDPSATFYVVGTVMDWEETELSAEFTFTNPNAKGTCGCGESFNV 619
            RRRLRE PP ++LTD AA RI+EL+   P A G+RLGV+ RGCNG SYT+ +++ K   +EE+   GVRVFV+P A F+VVGT MD++ T +S+EF F NPNAKG+CGCGESFNV
Sbjct:   33 RRRLRELPPPLKLTDAAATRIKELLVNKPDAIGIRLGVKTRGCNGLSYTMNYAEKKENLEEEVNKNGVRVFVEPKALFHVVGTTMDFQVTPVSSEFVFENPNAKGSCGCGESFNV 147          
BLAST of mRNA_P-wetherbeei_contig514.2.1 vs. uniprot
Match: A0A485LS92_9STRA (Aste57867_25084 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LS92_9STRA)

HSP 1 Score: 151 bits (381), Expect = 9.780e-43
Identity = 72/119 (60.50%), Postives = 95/119 (79.83%), Query Frame = 2
Query:  266 APRRRRLR-ERPPSIQLTDRAAERIRELMAQCPSAAGVRLGVRRRGCNGFSYTLKFSDDKPAKDEEIADKGVRVFVDPSATFYVVGTVMDWEETELSAEFTFTNPNAKGTCGCGESFNV 619
            AP+R R+R E P +I+LTD AA+RI EL+++ P A G+ LGVR RGC+G SYT+ ++ +K   DEE+++KGV+VF+D  A F+VVGT MD++ T +SAEFTF NPNAKGTCGCGESFNV
Sbjct:   23 APKRTRVRREIPAAIKLTDAAAQRIAELLSKQPDAVGIHLGVRTRGCSGLSYTMNYATEKNKLDEEVSEKGVKVFIDSKALFHVVGTTMDYKITPVSAEFTFENPNAKGTCGCGESFNV 141          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig514.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8P3_9STRA1.140e-5177.00Fe-S_biosyn domain-containing protein n=1 Tax=Trib... [more]
K3WSX7_GLOUD1.940e-4665.22Fe-S_biosyn domain-containing protein n=1 Tax=Glob... [more]
A0A7S2XY71_9STRA9.360e-4664.04Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
H3HBE5_PHYRM1.560e-4560.98Fe-S_biosyn domain-containing protein n=33 Tax=Per... [more]
D7FWL5_ECTSI5.100e-4549.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A484DVJ7_BRELC3.340e-4462.61Fe-S_biosyn domain-containing protein n=1 Tax=Brem... [more]
A0A6G0WQ08_9STRA4.600e-4464.91Fe-S_biosyn domain-containing protein n=1 Tax=Apha... [more]
W4GE64_9STRA1.430e-4358.16Fe-S_biosyn domain-containing protein n=3 Tax=Apha... [more]
A0A0P1B349_PLAHL5.880e-4360.87Iron-sulfur protein n=1 Tax=Plasmopara halstedii T... [more]
A0A485LS92_9STRA9.780e-4360.50Aste57867_25084 protein n=1 Tax=Aphanomyces stella... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig514contigP-wetherbeei_contig514:1630..2727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog115417.EPrPW00000013861
PFAMsFe-S_biosyn
Model size763
Max annot lvl121069|Pythiales
Hectar predicted targeting categorymitochondrion
Exons2
Evalue7.62e-50
EggNOG OGsCOG0316@1|root,KOG1120@2759|Eukaryota,1MGY8@121069|Pythiales
Ec32 ortholog descriptionFeS cluster biogenesis
Ec32 orthologEc-11_002370.1
DescriptionIron-sulfur cluster assembly protein. Source PGD
Cds size567
COG categoryP
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186772.060033-UTR-P-wetherbeei_contig514:1629..16841683186772.060033-UTR-P-wetherbeei_contig514:1629..1684Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig514 1630..1684 +
1683186772.0846899-UTR-P-wetherbeei_contig514:2586..27271683186772.0846899-UTR-P-wetherbeei_contig514:2586..2727Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig514 2587..2727 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186772.069026-CDS-P-wetherbeei_contig514:1684..19421683186772.069026-CDS-P-wetherbeei_contig514:1684..1942Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig514 1685..1942 +
1683186772.0769792-CDS-P-wetherbeei_contig514:2277..25861683186772.0769792-CDS-P-wetherbeei_contig514:2277..2586Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig514 2278..2586 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig514.2.1prot_P-wetherbeei_contig514.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig514 1685..2586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig514.2.1

>prot_P-wetherbeei_contig514.2.1 ID=prot_P-wetherbeei_contig514.2.1|Name=mRNA_P-wetherbeei_contig514.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=189bp
MQRTMMPLRTMAAVAARARTGASVAPCLALRALRGTAPPSEPSYGTRVRR
LSSAAAVVEEDHADDASADHAPRRRRLRERPPSIQLTDRAAERIRELMAQ
CPSAAGVRLGVRRRGCNGFSYTLKFSDDKPAKDEEIADKGVRVFVDPSAT
FYVVGTVMDWEETELSAEFTFTNPNAKGTCGCGESFNV*
back to top

mRNA from alignment at P-wetherbeei_contig514:1630..2727+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig514.2.1 ID=mRNA_P-wetherbeei_contig514.2.1|Name=mRNA_P-wetherbeei_contig514.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1098bp|location=Sequence derived from alignment at P-wetherbeei_contig514:1630..2727+ (Phaeothamnion wetherbeei SAG_119_79)
AAGCGTATTCTCGCGGCGGGCAATTTAGGCAGAGAAAGGGAGAGGTCGAG GCCCGATGCAACGAACCATGATGCCGCTGCGCACCATGGCTGCTGTCGCG GCGCGGGCAAGGACTGGTGCGTCGGTAGCACCCTGTCTCGCGCTGCGCGC TTTAAGAGGAACTGCACCGCCGTCAGAACCGAGCTATGGCACGCGCGTAC GACGACTATCGAGTGCGGCAGCGGTGGTAGAGGAAGATCACGCCGACGAT GCTAGCGCGGATCACGCGCCTAGAAGGAGGCGATTGCGGGAGCGGCCGCC GTCCATCCAGCTGGTGAGTTGACCTTTTCTTTTCTTTTACGCGGCTTGTC GTTGCGTGCGCGGTGCTCTCGTGTTGCTTTCTCTGCCGCGTTGTAGTTGA TGCCGAGTCGCAACCCCTGCGCGTCAAAATTTAGCCATATGCAGGGATCG CACTTAGCTTTGAGCGGCGCTTCGATTACATCTGGCGATTGCACTTTAGC GTTACTAATGAATAACATCCCTTGCAAAATGGTGACGTGTGCTAGTTGTC ATAGGCTCCGTTCATCTATTATATGGCATTCTTCGAGAAAGCACTGAACA AATATCTTCCTATTTGGCGCCCTCCCCATCTCTCTGCCGCTTTGGCAGAC GGATCGCGCCGCAGAGCGCATCCGCGAGCTGATGGCGCAGTGCCCGAGCG CCGCCGGCGTCCGGCTGGGCGTGCGCCGGCGGGGTTGCAATGGCTTCTCC TACACGCTCAAGTTTTCGGACGACAAGCCAGCAAAGGACGAAGAGATTGC CGACAAGGGCGTCCGCGTCTTCGTGGATCCGTCGGCGACGTTTTACGTGG TCGGTACCGTCATGGACTGGGAAGAGACGGAGCTGAGCGCCGAATTCACG TTCACGAACCCGAACGCGAAGGGGACATGCGGCTGCGGCGAGAGCTTCAA CGTTTGACAGATGGACAAGAGGCGAAGGGAGAACGAGCTCGAAGCATCTT TCTGCCCCCATTGTAAATAGTAAGAATAGTCTTGATGCTTCGAAGAATAA GGAAACGGTGAGTACAACAGATTCGCAAGCCTGCGGCGTCTTGTCAAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig514:1630..2727+

>mRNA_P-wetherbeei_contig514.2.1 ID=mRNA_P-wetherbeei_contig514.2.1|Name=mRNA_P-wetherbeei_contig514.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=567bp|location=Sequence derived from alignment at P-wetherbeei_contig514:1630..2727+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAACGAACCATGATGCCGCTGCGCACCATGGCTGCTGTCGCGGCGCG
GGCAAGGACTGGTGCGTCGGTAGCACCCTGTCTCGCGCTGCGCGCTTTAA
GAGGAACTGCACCGCCGTCAGAACCGAGCTATGGCACGCGCGTACGACGA
CTATCGAGTGCGGCAGCGGTGGTAGAGGAAGATCACGCCGACGATGCTAG
CGCGGATCACGCGCCTAGAAGGAGGCGATTGCGGGAGCGGCCGCCGTCCA
TCCAGCTGACGGATCGCGCCGCAGAGCGCATCCGCGAGCTGATGGCGCAG
TGCCCGAGCGCCGCCGGCGTCCGGCTGGGCGTGCGCCGGCGGGGTTGCAA
TGGCTTCTCCTACACGCTCAAGTTTTCGGACGACAAGCCAGCAAAGGACG
AAGAGATTGCCGACAAGGGCGTCCGCGTCTTCGTGGATCCGTCGGCGACG
TTTTACGTGGTCGGTACCGTCATGGACTGGGAAGAGACGGAGCTGAGCGC
CGAATTCACGTTCACGAACCCGAACGCGAAGGGGACATGCGGCTGCGGCG
AGAGCTTCAACGTTTGA
back to top