mRNA_P-wetherbeei_contig51399.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51399.1.1
Unique NamemRNA_P-wetherbeei_contig51399.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig51399.1.1 vs. uniprot
Match: A0A346A448_9HYPH (Probable membrane transporter protein n=2 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A346A448_9HYPH)

HSP 1 Score: 236 bits (602), Expect = 5.000e-76
Identity = 120/154 (77.92%), Postives = 137/154 (88.96%), Query Frame = 1
Query:    1 VVFALFISARMLFGTDRMSLGSELPGRALLWFFGFVTGLFSSLVGVSGGAVSNAVLTLYGQTMQRAVATSAGVGVPITIAGTVGYMLAGLPHQAQLPPLSIGFVSVIGVALMAPVSSYTTSYGVRLAHWLPRRKLEISFGLFLMLVSLRFLVSL 462
            VVFA FI+ RML G DR+SLG+ELPGRA+L  +GF+TGL SSLVGVSGGAV+NAVLTLYG+ M + V T+AG+GVPITIAGT+GYMLAG PHQAQLPPLSIGFVS+IG ALMAPVSSYT SYGVRLAHWLPRR+LEI+FG+FL L SLRF+ SL
Sbjct:  111 VVFAAFIATRMLIGADRLSLGTELPGRAVLSVYGFITGLVSSLVGVSGGAVANAVLTLYGRPMHQTVGTAAGIGVPITIAGTIGYMLAGWPHQAQLPPLSIGFVSLIGFALMAPVSSYTASYGVRLAHWLPRRQLEIAFGIFLALASLRFVFSL 264          
BLAST of mRNA_P-wetherbeei_contig51399.1.1 vs. uniprot
Match: A0A0Q7U3D0_9HYPH (Probable membrane transporter protein n=2 Tax=Pseudolabrys sp. Root1462 TaxID=1736466 RepID=A0A0Q7U3D0_9HYPH)

HSP 1 Score: 208 bits (529), Expect = 7.500e-65
Identity = 107/154 (69.48%), Postives = 128/154 (83.12%), Query Frame = 1
Query:    1 VVFALFISARMLFGTDRMSLGSELPGRALLWFFGFVTGLFSSLVGVSGGAVSNAVLTLYGQTMQRAVATSAGVGVPITIAGTVGYMLAGLPHQAQLPPLSIGFVSVIGVALMAPVSSYTTSYGVRLAHWLPRRKLEISFGLFLMLVSLRFLVSL 462
            VVF +FIS +MLF  DR ++ + LPG AL+  +GF+ GL SSLVGVSGGAVSNA+LTL+GQ MQRAVATSAG+GVPIT+ G +GY +AG PH AQLPPLS+GF+SVIG  LMAPVSSYT +YGVRLAH LPRR LEI FGLFL+ VS RF+++L
Sbjct:  120 VVFTIFISIKMLFIGDRWNVSNRLPGPALVALYGFIMGLVSSLVGVSGGAVSNAMLTLHGQPMQRAVATSAGIGVPITVVGAIGYAIAGWPHLAQLPPLSLGFISVIGFVLMAPVSSYTATYGVRLAHALPRRYLEIGFGLFLLAVSARFVLTL 273          
BLAST of mRNA_P-wetherbeei_contig51399.1.1 vs. uniprot
Match: A0A537L2W4_9PROT (Probable membrane transporter protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537L2W4_9PROT)

HSP 1 Score: 206 bits (524), Expect = 4.420e-64
Identity = 107/154 (69.48%), Postives = 129/154 (83.77%), Query Frame = 1
Query:    1 VVFALFISARMLFGTDRMSLGSELPGRALLWFFGFVTGLFSSLVGVSGGAVSNAVLTLYGQTMQRAVATSAGVGVPITIAGTVGYMLAGLPHQAQLPPLSIGFVSVIGVALMAPVSSYTTSYGVRLAHWLPRRKLEISFGLFLMLVSLRFLVSL 462
            VV A+ ISAR LFG DR  LG  LPGR  +  +G   GL SSL+GVSGG++S  VLTLYG+ +  AV T+AG+GVP+TIAGT+GY+LAGLPHQA LPPLSIGFVS+IGVALMAPVSS+  SYGVRLAHWLP+R+LEI+FG+FL+LVS+RF+VSL
Sbjct:  122 VVLAMIISAR-LFGGDRWRLGDTLPGRFAMTIYGLAIGLASSLMGVSGGSMSTMVLTLYGKPIHAAVGTAAGLGVPLTIAGTIGYVLAGLPHQASLPPLSIGFVSLIGVALMAPVSSFMASYGVRLAHWLPKRQLEIAFGIFLLLVSVRFIVSL 274          
BLAST of mRNA_P-wetherbeei_contig51399.1.1 vs. uniprot
Match: A0A2C9D431_9HYPH (Probable membrane transporter protein n=1 Tax=Hartmannibacter diazotrophicus TaxID=1482074 RepID=A0A2C9D431_9HYPH)

HSP 1 Score: 204 bits (520), Expect = 1.840e-63
Identity = 103/154 (66.88%), Postives = 124/154 (80.52%), Query Frame = 1
Query:    1 VVFALFISARMLFGTDRMSLGSELPGRALLWFFGFVTGLFSSLVGVSGGAVSNAVLTLYGQTMQRAVATSAGVGVPITIAGTVGYMLAGLPHQAQLPPLSIGFVSVIGVALMAPVSSYTTSYGVRLAHWLPRRKLEISFGLFLMLVSLRFLVSL 462
            V+FA  IS RM  GTDR SLG+ELPGR  +  +G +TGL SSLVGVSGGA SN ++TLYGQ + RAVATS+G+GVPIT+ G +GYM+AG  ++  LPPL++GFVS+IG ALMAPV+S+TTSYGVRLAHWLP R LEI FGLFL    +RFLVSL
Sbjct:  121 VIFATLISLRMFLGTDRWSLGTELPGRGPMTIYGMMTGLISSLVGVSGGAFSNTIMTLYGQPIHRAVATSSGIGVPITVVGAIGYMIAGWRYRDMLPPLTVGFVSLIGFALMAPVASWTTSYGVRLAHWLPHRVLEIGFGLFLGSAGVRFLVSL 274          
BLAST of mRNA_P-wetherbeei_contig51399.1.1 vs. uniprot
Match: A0A363TM56_9BRAD (Probable membrane transporter protein n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A363TM56_9BRAD)

HSP 1 Score: 202 bits (515), Expect = 1.080e-62
Identity = 102/154 (66.23%), Postives = 127/154 (82.47%), Query Frame = 1
Query:    1 VVFALFISARMLFGTDRMSLGSELPGRALLWFFGFVTGLFSSLVGVSGGAVSNAVLTLYGQTMQRAVATSAGVGVPITIAGTVGYMLAGLPHQAQLPPLSIGFVSVIGVALMAPVSSYTTSYGVRLAHWLPRRKLEISFGLFLMLVSLRFLVSL 462
            VV    I+ ++LFG +   + ++LPGRAL+  +GFV GL SSL+GVSGG++SN +LTL+G+ +  AVATSAG+GVPITIAGT+GY LAGLPH A LPPLSIGFVS+IG ALMAPVSSY   YGVRLAHWLP+R+LEI+FG+FL+ V+LRFL SL
Sbjct:  122 VVIVTVIAVKLLFGRESWRIAADLPGRALMSLYGFVIGLASSLMGVSGGSISNMILTLHGKPIHHAVATSAGLGVPITIAGTLGYALAGLPHLAALPPLSIGFVSLIGFALMAPVSSYMAGYGVRLAHWLPKRRLEIAFGVFLLAVALRFLASL 275          
BLAST of mRNA_P-wetherbeei_contig51399.1.1 vs. uniprot
Match: A0A371B3E2_9HYPH (Probable membrane transporter protein n=1 Tax=Pseudolabrys sp. GY_H TaxID=2292256 RepID=A0A371B3E2_9HYPH)

HSP 1 Score: 196 bits (498), Expect = 3.910e-60
Identity = 98/155 (63.23%), Postives = 123/155 (79.35%), Query Frame = 1
Query:    1 VVFALFISARMLFGTDRMSLGSELPGRALLWFFGFVTGLFSSLVGVSGGAVSNAVLTLYGQTMQRAVATSAGVGVPITIAGTVGYMLAGLPHQAQLPPLSIGFVSVIGVALMAPVSSYTTSYGVRLAHWLPRRKLEISFGLFLMLVSLRFLVSLF 465
            V F   ++ +ML GT+R ++G+ELPGR +L F+GF  G  SSLVGVSGG  S A+LTLYGQ + RAVATSAG+GVPITIAGT+GY++AG PH  +LPPLS+GFVS+ G  LMAPV+S+ T+YGVRLAH L RR LE++F  FL+LV  RFL+SLF
Sbjct:  122 VTFCALMATKMLAGTNRWNIGTELPGRVVLSFYGFAMGALSSLVGVSGGGFSTAILTLYGQPIHRAVATSAGLGVPITIAGTIGYIIAGWPHMGELPPLSLGFVSLPGFVLMAPVASFMTTYGVRLAHGLSRRSLEVAFACFLLLVGTRFLISLF 276          
BLAST of mRNA_P-wetherbeei_contig51399.1.1 vs. uniprot
Match: UPI0010BEDAB5 (sulfite exporter TauE/SafE family protein n=1 Tax=Pseudolabrys sp. FHR47 TaxID=2562284 RepID=UPI0010BEDAB5)

HSP 1 Score: 195 bits (496), Expect = 7.850e-60
Identity = 99/155 (63.87%), Postives = 123/155 (79.35%), Query Frame = 1
Query:    1 VVFALFISARMLFGTDRMSLGSELPGRALLWFFGFVTGLFSSLVGVSGGAVSNAVLTLYGQTMQRAVATSAGVGVPITIAGTVGYMLAGLPHQAQLPPLSIGFVSVIGVALMAPVSSYTTSYGVRLAHWLPRRKLEISFGLFLMLVSLRFLVSLF 465
            V F   ++A+MLFGT R +LG+ELPGR +L  +GF  G  SSLVGVSGG  S A+LTLYGQ + RAVATSAG+GVPIT+ GT+GY++AG PH ++LPPLS+GFVS+ G  LMAPV++Y TSYGV+LAH L RR LE++F  FL+LV  RFLVSLF
Sbjct:  122 VTFCALMAAKMLFGTHRGNLGTELPGRVVLSLYGFAMGALSSLVGVSGGGFSTAILTLYGQPIHRAVATSAGLGVPITVVGTIGYIIAGWPHLSELPPLSLGFVSLPGFVLMAPVAAYMTSYGVQLAHGLSRRHLEVAFACFLLLVGTRFLVSLF 276          
BLAST of mRNA_P-wetherbeei_contig51399.1.1 vs. uniprot
Match: A0A1Q4DGD8_9HYPH (Probable membrane transporter protein n=1 Tax=Rhizobiales bacterium 64-17 TaxID=1895814 RepID=A0A1Q4DGD8_9HYPH)

HSP 1 Score: 193 bits (491), Expect = 2.870e-59
Identity = 96/152 (63.16%), Postives = 122/152 (80.26%), Query Frame = 1
Query:    4 VFALFISARMLFGTDRMSLGSELPGRALLWFFGFVTGLFSSLVGVSGGAVSNAVLTLYGQTMQRAVATSAGVGVPITIAGTVGYMLAGLPHQAQLPPLSIGFVSVIGVALMAPVSSYTTSYGVRLAHWLPRRKLEISFGLFLMLVSLRFLVS 459
            V A F++ +   G D   +  ELPG+  +  +GF+ GL +SL+GVSGG+VSNAVL L+G  +  +VATSAG+GVPITIAG VGYMLAGL +Q+Q+PPLSIGFVS+IGV LMAPV+SY   YGV+LAHW+PRRKLEI+FG+FL+LVS RF+VS
Sbjct:  108 VIATFVAIKSFLGNDNWQVAKELPGQPAMSGYGFLVGLCASLMGVSGGSVSNAVLMLHGVPIHNSVATSAGIGVPITIAGAVGYMLAGLAYQSQMPPLSIGFVSIIGVVLMAPVTSYMAGYGVKLAHWMPRRKLEIAFGIFLLLVSARFVVS 259          
BLAST of mRNA_P-wetherbeei_contig51399.1.1 vs. uniprot
Match: A0A537PIL2_9PROT (Probable membrane transporter protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537PIL2_9PROT)

HSP 1 Score: 194 bits (492), Expect = 3.250e-59
Identity = 101/154 (65.58%), Postives = 124/154 (80.52%), Query Frame = 1
Query:    1 VVFALFISARMLFGTDRMSLGSELPGRALLWFFGFVTGLFSSLVGVSGGAVSNAVLTLYGQTMQRAVATSAGVGVPITIAGTVGYMLAGLPHQAQLPPLSIGFVSVIGVALMAPVSSYTTSYGVRLAHWLPRRKLEISFGLFLMLVSLRFLVSL 462
            VV A  I+A++LFG +   L SELPGR  +  +GF+ GL S+L+GVSGG+VSN +LTL+G+ +  AVATSAG+GVPIT+AGT GYMLAGLPHQA LPPLSIGFVS++GVA+MAPVSS T  YG RLAH L +R+LEI+FGLFL+  S RFL SL
Sbjct:  122 VVIASLIAAKLLFGRETWRLASELPGRVGMAGYGFLVGLCSALMGVSGGSVSNMILTLHGKPLHNAVATSAGLGVPITVAGTAGYMLAGLPHQALLPPLSIGFVSLLGVAVMAPVSSLTAGYGARLAHALSKRRLEIAFGLFLLAASARFLASL 275          
BLAST of mRNA_P-wetherbeei_contig51399.1.1 vs. uniprot
Match: A0A7C2UDT9_9PROT (Probable membrane transporter protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C2UDT9_9PROT)

HSP 1 Score: 186 bits (473), Expect = 2.350e-56
Identity = 98/154 (63.64%), Postives = 118/154 (76.62%), Query Frame = 1
Query:    1 VVFALFISARMLFGTDRMSLGSELPGRALLWFFGFVTGLFSSLVGVSGGAVSNAVLTLYGQTMQRAVATSAGVGVPITIAGTVGYMLAGLPHQAQLPPLSIGFVSVIGVALMAPVSSYTTSYGVRLAHWLPRRKLEISFGLFLMLVSLRFLVSL 462
            +V A  I+A++LFG     LG +LP   L   +G   GL +SL GVSGG++   VLTLYG+ + +AVATSAG+ VPI IAGT+GYM+AGL HQAQLPPLSIGFVS+IG ALMAPVSS+T SYG +LAH LPRRKLEI+FGLFL+  SLRF  SL
Sbjct:  121 IVIAALIAAKLLFGRQSWRLGDDLPTHPLTRLYGLAVGLMASLTGVSGGSLCTMVLTLYGKPIHQAVATSAGIVVPIAIAGTLGYMVAGLLHQAQLPPLSIGFVSLIGFALMAPVSSFTASYGAKLAHALPRRKLEIAFGLFLLAASLRFFASL 274          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51399.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A346A448_9HYPH5.000e-7677.92Probable membrane transporter protein n=2 Tax=Pseu... [more]
A0A0Q7U3D0_9HYPH7.500e-6569.48Probable membrane transporter protein n=2 Tax=Pseu... [more]
A0A537L2W4_9PROT4.420e-6469.48Probable membrane transporter protein n=1 Tax=Alph... [more]
A0A2C9D431_9HYPH1.840e-6366.88Probable membrane transporter protein n=1 Tax=Hart... [more]
A0A363TM56_9BRAD1.080e-6266.23Probable membrane transporter protein n=1 Tax=Brad... [more]
A0A371B3E2_9HYPH3.910e-6063.23Probable membrane transporter protein n=1 Tax=Pseu... [more]
UPI0010BEDAB57.850e-6063.87sulfite exporter TauE/SafE family protein n=1 Tax=... [more]
A0A1Q4DGD8_9HYPH2.870e-5963.16Probable membrane transporter protein n=1 Tax=Rhiz... [more]
A0A537PIL2_9PROT3.250e-5965.58Probable membrane transporter protein n=1 Tax=Alph... [more]
A0A7C2UDT9_9PROT2.350e-5663.64Probable membrane transporter protein n=1 Tax=Beta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51399contigP-wetherbeei_contig51399:4..471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1187851.A33M_3033
Preferred nameMA20_43555
PFAMsTauE
Model size468
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K07090
Hectar predicted targeting categorysignal anchor
Exons1
Evalue5.73e-51
EggNOG OGsCOG0730@1|root,COG0730@2|Bacteria,1R3V4@1224|Proteobacteria,2TRYX@28211|Alphaproteobacteria,3FD9G@34008|Rhodovulum
DescriptionSulfite exporter TauE/SafE
Cds size438
COG categoryS
BRITEko00000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186771.957003-UTR-P-wetherbeei_contig51399:3..331683186771.957003-UTR-P-wetherbeei_contig51399:3..33Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig51399 4..33 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186771.9779704-CDS-P-wetherbeei_contig51399:33..4711683186771.9779704-CDS-P-wetherbeei_contig51399:33..471Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51399 34..471 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51399.1.1prot_P-wetherbeei_contig51399.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51399 34..471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51399.1.1

>prot_P-wetherbeei_contig51399.1.1 ID=prot_P-wetherbeei_contig51399.1.1|Name=mRNA_P-wetherbeei_contig51399.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=146bp
MLFGTDRMSLGSELPGRALLWFFGFVTGLFSSLVGVSGGAVSNAVLTLYG
QTMQRAVATSAGVGVPITIAGTVGYMLAGLPHQAQLPPLSIGFVSVIGVA
LMAPVSSYTTSYGVRLAHWLPRRKLEISFGLFLMLVSLRFLVSLF*
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mRNA from alignment at P-wetherbeei_contig51399:4..471+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51399.1.1 ID=mRNA_P-wetherbeei_contig51399.1.1|Name=mRNA_P-wetherbeei_contig51399.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig51399:4..471+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGTGTTCGCGCTGTTCATTTCGGCGCGCATGCTGTTCGGCACCGACCG GATGAGCCTGGGGAGCGAACTGCCCGGCCGCGCGCTGCTGTGGTTCTTCG GCTTCGTCACCGGGCTGTTCTCGTCGCTCGTCGGCGTCAGCGGCGGGGCG GTGTCGAATGCCGTGCTGACGCTGTACGGTCAGACGATGCAGCGCGCGGT CGCTACCTCGGCTGGTGTCGGCGTGCCGATCACCATCGCCGGCACGGTCG GCTACATGCTGGCGGGCCTGCCGCATCAGGCGCAGTTGCCGCCGCTGTCG ATCGGCTTCGTGTCGGTGATCGGCGTGGCGCTGATGGCGCCGGTGTCGAG CTATACCACGAGCTACGGCGTGCGGCTCGCGCACTGGCTGCCGCGCCGCA AGCTCGAGATCAGCTTTGGCCTGTTCCTGATGCTGGTGTCGCTGCGCTTC CTGGTCAGCCTGTTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51399:4..471+

>mRNA_P-wetherbeei_contig51399.1.1 ID=mRNA_P-wetherbeei_contig51399.1.1|Name=mRNA_P-wetherbeei_contig51399.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig51399:4..471+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGTTCGGCACCGACCGGATGAGCCTGGGGAGCGAACTGCCCGGCCG
CGCGCTGCTGTGGTTCTTCGGCTTCGTCACCGGGCTGTTCTCGTCGCTCG
TCGGCGTCAGCGGCGGGGCGGTGTCGAATGCCGTGCTGACGCTGTACGGT
CAGACGATGCAGCGCGCGGTCGCTACCTCGGCTGGTGTCGGCGTGCCGAT
CACCATCGCCGGCACGGTCGGCTACATGCTGGCGGGCCTGCCGCATCAGG
CGCAGTTGCCGCCGCTGTCGATCGGCTTCGTGTCGGTGATCGGCGTGGCG
CTGATGGCGCCGGTGTCGAGCTATACCACGAGCTACGGCGTGCGGCTCGC
GCACTGGCTGCCGCGCCGCAAGCTCGAGATCAGCTTTGGCCTGTTCCTGA
TGCTGGTGTCGCTGCGCTTCCTGGTCAGCCTGTTCTGA
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