mRNA_P-wetherbeei_contig5134.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5134.2.1
Unique NamemRNA_P-wetherbeei_contig5134.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5134.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5134contigP-wetherbeei_contig5134:2..1600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1599
Hectar predicted targeting categorysignal anchor
Exons1
Cds size1227
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186771.1000228-UTR-P-wetherbeei_contig5134:1..661683186771.1000228-UTR-P-wetherbeei_contig5134:1..66Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5134 2..66 +
1683186771.1233711-UTR-P-wetherbeei_contig5134:1293..16001683186771.1233711-UTR-P-wetherbeei_contig5134:1293..1600Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5134 1294..1600 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186771.1112018-CDS-P-wetherbeei_contig5134:66..12931683186771.1112018-CDS-P-wetherbeei_contig5134:66..1293Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5134 67..1293 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5134.2.1prot_P-wetherbeei_contig5134.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5134 67..1293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5134.2.1

>prot_P-wetherbeei_contig5134.2.1 ID=prot_P-wetherbeei_contig5134.2.1|Name=mRNA_P-wetherbeei_contig5134.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=409bp
MLGTFLSYVEARGASDDAAASCAKTTKRPCKRLLGTGVSWFCHGLPSKHR
FVGAAVVAIVLLTVARAGSLLLTWSANEGRTMTPSRSAALGGSNSARDRG
GDRRPSQLPPPPPPPPIAGVLEQSPWVMWGAGTGSASRASTGETVVCPLG
DDDDGKQDSMEDLRRRALPWPFLPSFAEAPGGENRTPPAIATAGGALWAA
RLAAARAAAAVATAIPLPSAPSGNEARGGKATTGDDSGRPHEPSGFQLAP
SAAAAAAAAAAATKRTEPSPLIGWEASMTGISELATFRAMVAAAHARFKA
YSDGLGGGDQTLAERAGPVVAAFAWRIVESVQAAGVAAWDDPGLGGKAWR
ATAGTAATLLGWQLEGPARASCMQRLGRRGVAAGDCACMRDGPTVLCLAV
DDDPVNEL*
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mRNA from alignment at P-wetherbeei_contig5134:2..1600+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5134.2.1 ID=mRNA_P-wetherbeei_contig5134.2.1|Name=mRNA_P-wetherbeei_contig5134.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1599bp|location=Sequence derived from alignment at P-wetherbeei_contig5134:2..1600+ (Phaeothamnion wetherbeei SAG_119_79)
TACGAGCCAGCCGCGTCGAGTCTAAGGAGCCACGATGTGCACCTGGGAAG
GAGTCAACCCTCGTCATGCTTGGGACTTTTCTCTCCTACGTCGAGGCGCG
AGGAGCAAGCGACGACGCGGCGGCCAGCTGCGCAAAGACAACCAAGCGCC
CATGTAAAAGACTTCTGGGGACTGGCGTTAGCTGGTTTTGCCACGGCTTG
CCGTCCAAGCACCGATTCGTGGGAGCGGCCGTTGTGGCCATTGTCTTGCT
CACGGTGGCACGAGCCGGCTCGCTCCTGCTGACGTGGAGCGCCAATGAAG
GACGGACGATGACGCCTTCCCGCAGCGCCGCCTTGGGAGGGTCAAACTCA
GCCCGCGACCGGGGTGGCGACCGGCGACCATCCCAGCTGCCGCCGCCGCC
GCCGCCGCCGCCCATCGCAGGCGTTCTGGAGCAATCCCCATGGGTCATGT
GGGGCGCGGGAACGGGCAGCGCGAGCCGCGCCAGCACCGGAGAGACCGTG
GTCTGCCCCTTAGGCGACGATGACGACGGCAAGCAGGACTCCATGGAAGA
CCTGCGGCGCCGTGCACTGCCGTGGCCGTTTCTGCCGTCCTTCGCGGAGG
CGCCGGGCGGCGAGAACCGGACTCCTCCGGCAATCGCTACCGCAGGCGGG
GCGCTGTGGGCCGCGAGGCTCGCGGCTGCCCGCGCGGCAGCCGCAGTTGC
AACTGCGATACCGCTGCCGTCAGCTCCATCGGGAAATGAGGCAAGAGGCG
GAAAGGCGACGACGGGAGACGATAGCGGGCGTCCGCACGAGCCATCCGGA
TTTCAGTTGGCACCTTCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCAGC
AACAAAGAGAACAGAGCCTTCCCCGCTCATTGGGTGGGAGGCGAGCATGA
CGGGCATCTCCGAGCTGGCGACGTTTCGCGCTATGGTGGCCGCCGCCCAC
GCCCGCTTCAAGGCCTACAGCGACGGCCTCGGCGGTGGCGATCAGACGCT
GGCGGAGCGCGCCGGCCCCGTGGTGGCAGCTTTCGCGTGGCGGATTGTGG
AATCCGTCCAAGCGGCCGGCGTTGCCGCCTGGGACGACCCGGGGCTGGGA
GGAAAAGCGTGGCGGGCGACCGCCGGTACCGCGGCAACGCTACTGGGCTG
GCAGCTGGAGGGGCCGGCGCGCGCCAGCTGCATGCAGCGGTTGGGGCGGC
GGGGCGTCGCCGCCGGCGACTGCGCCTGCATGCGCGACGGGCCGACGGTG
TTGTGCCTCGCCGTCGACGACGATCCCGTCAACGAGCTGTAAAATGATGC
GAGTGCGTCGCAGCATGTGCATGCTTTGTTCAAGCGATATCAAGCCCTGA
AGCGAAGAACGGGGCACGGCTAAGACGGCGACGCCGACGGCGTCGACGGC
GGCGATGGCTTTCGCGGCGGTTTCGGTGGTGGCGCCGGCGGTTTCGGCTT
CGGTGACGGCGCCGGTAGTTTCGGCTTCGGTGGCGGCGCCCCCTGCTTCG
GCTTCGGCGGTGGCGGCGGTGGCGGCGGCACTGGGGGCGGCAACCACAGC
GGCGGTGGCGCTGGCGCCGGCGGCGCTGGCGGTGACGGCGACAGCAGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5134:2..1600+

>mRNA_P-wetherbeei_contig5134.2.1 ID=mRNA_P-wetherbeei_contig5134.2.1|Name=mRNA_P-wetherbeei_contig5134.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1227bp|location=Sequence derived from alignment at P-wetherbeei_contig5134:2..1600+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTGGGACTTTTCTCTCCTACGTCGAGGCGCGAGGAGCAAGCGACGA
CGCGGCGGCCAGCTGCGCAAAGACAACCAAGCGCCCATGTAAAAGACTTC
TGGGGACTGGCGTTAGCTGGTTTTGCCACGGCTTGCCGTCCAAGCACCGA
TTCGTGGGAGCGGCCGTTGTGGCCATTGTCTTGCTCACGGTGGCACGAGC
CGGCTCGCTCCTGCTGACGTGGAGCGCCAATGAAGGACGGACGATGACGC
CTTCCCGCAGCGCCGCCTTGGGAGGGTCAAACTCAGCCCGCGACCGGGGT
GGCGACCGGCGACCATCCCAGCTGCCGCCGCCGCCGCCGCCGCCGCCCAT
CGCAGGCGTTCTGGAGCAATCCCCATGGGTCATGTGGGGCGCGGGAACGG
GCAGCGCGAGCCGCGCCAGCACCGGAGAGACCGTGGTCTGCCCCTTAGGC
GACGATGACGACGGCAAGCAGGACTCCATGGAAGACCTGCGGCGCCGTGC
ACTGCCGTGGCCGTTTCTGCCGTCCTTCGCGGAGGCGCCGGGCGGCGAGA
ACCGGACTCCTCCGGCAATCGCTACCGCAGGCGGGGCGCTGTGGGCCGCG
AGGCTCGCGGCTGCCCGCGCGGCAGCCGCAGTTGCAACTGCGATACCGCT
GCCGTCAGCTCCATCGGGAAATGAGGCAAGAGGCGGAAAGGCGACGACGG
GAGACGATAGCGGGCGTCCGCACGAGCCATCCGGATTTCAGTTGGCACCT
TCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCAGCAACAAAGAGAACAGA
GCCTTCCCCGCTCATTGGGTGGGAGGCGAGCATGACGGGCATCTCCGAGC
TGGCGACGTTTCGCGCTATGGTGGCCGCCGCCCACGCCCGCTTCAAGGCC
TACAGCGACGGCCTCGGCGGTGGCGATCAGACGCTGGCGGAGCGCGCCGG
CCCCGTGGTGGCAGCTTTCGCGTGGCGGATTGTGGAATCCGTCCAAGCGG
CCGGCGTTGCCGCCTGGGACGACCCGGGGCTGGGAGGAAAAGCGTGGCGG
GCGACCGCCGGTACCGCGGCAACGCTACTGGGCTGGCAGCTGGAGGGGCC
GGCGCGCGCCAGCTGCATGCAGCGGTTGGGGCGGCGGGGCGTCGCCGCCG
GCGACTGCGCCTGCATGCGCGACGGGCCGACGGTGTTGTGCCTCGCCGTC
GACGACGATCCCGTCAACGAGCTGTAA
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