mRNA_P-wetherbeei_contig51312.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51312.2.1
Unique NamemRNA_P-wetherbeei_contig51312.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig51312.2.1 vs. uniprot
Match: A0A7C5Z989_9BACT (Alpha/beta hydrolase n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A7C5Z989_9BACT)

HSP 1 Score: 191 bits (486), Expect = 1.870e-58
Identity = 89/116 (76.72%), Postives = 104/116 (89.66%), Query Frame = 1
Query:    1 FMLPCTPQYEAAVFAAHRYRPWSAIRRLRRKRIPIIILQADKDSTAQPDTDQRVHRVRPDAAVTRVPGTSHFLPMERPYVVRDALRLIFEATVEGAGNVDYVGAVRRTIDDSVGIM 348
            F L CTP+YEAA F AHRYRPW+A+RRLRRKRIPII+LQADK+ST+  D DQR+H +RPDAAVTRVPGT+HF+PMERPYVVRDAL+++FEA +EG   VDYVGAVRRTIDDS+GIM
Sbjct:  202 FALSCTPEYEAATFGAHRYRPWAALRRLRRKRIPIIVLQADKESTSGADVDQRIHAIRPDAAVTRVPGTTHFVPMERPYVVRDALKMLFEAMIEGHQLVDYVGAVRRTIDDSIGIM 317          
BLAST of mRNA_P-wetherbeei_contig51312.2.1 vs. uniprot
Match: A0A258GYW3_9PROT (Alpha/beta hydrolase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A258GYW3_9PROT)

HSP 1 Score: 190 bits (482), Expect = 7.510e-58
Identity = 87/116 (75.00%), Postives = 106/116 (91.38%), Query Frame = 1
Query:    1 FMLPCTPQYEAAVFAAHRYRPWSAIRRLRRKRIPIIILQADKDSTAQPDTDQRVHRVRPDAAVTRVPGTSHFLPMERPYVVRDALRLIFEATVEGAGNVDYVGAVRRTIDDSVGIM 348
            FML CTP++EAAVF AHRYRPW A+R+LR+KRIPII+LQADK+ST+  DTDQR+H +RPDAAVT+VPGT+HF+PMERPYVVRDAL++++EA +EG   VDYVGAVRRTIDDS+GIM
Sbjct:  202 FMLSCTPEWEAAVFGAHRYRPWKALRKLRKKRIPIIVLQADKESTSPVDTDQRIHDIRPDAAVTKVPGTTHFVPMERPYVVRDALKMLYEAMIEGHKLVDYVGAVRRTIDDSIGIM 317          
BLAST of mRNA_P-wetherbeei_contig51312.2.1 vs. uniprot
Match: A0A4V1SUM2_9SPHN (Alpha/beta hydrolase n=1 Tax=Sphingomonadales bacterium TaxID=1978525 RepID=A0A4V1SUM2_9SPHN)

HSP 1 Score: 186 bits (473), Expect = 1.710e-56
Identity = 85/116 (73.28%), Postives = 105/116 (90.52%), Query Frame = 1
Query:    1 FMLPCTPQYEAAVFAAHRYRPWSAIRRLRRKRIPIIILQADKDSTAQPDTDQRVHRVRPDAAVTRVPGTSHFLPMERPYVVRDALRLIFEATVEGAGNVDYVGAVRRTIDDSVGIM 348
            + L CTP++EAAVF AHRYRPW+A+RRLR+KRIPII+LQAD+DST+  D DQR+H +RPDAA+T+VPGT+HF+PMERPYVVRDAL++++EA +EG   VDYVGAVRRTIDDSVGIM
Sbjct:  202 YELSCTPEWEAAVFDAHRYRPWAALRRLRKKRIPIIVLQADRDSTSPADVDQRIHNIRPDAAITKVPGTTHFVPMERPYVVRDALKMLYEAMIEGHTLVDYVGAVRRTIDDSVGIM 317          
BLAST of mRNA_P-wetherbeei_contig51312.2.1 vs. uniprot
Match: UPI0003813C60 (alpha/beta hydrolase n=1 Tax=Hirschia maritima TaxID=1121961 RepID=UPI0003813C60)

HSP 1 Score: 141 bits (355), Expect = 9.180e-39
Identity = 66/112 (58.93%), Postives = 85/112 (75.89%), Query Frame = 1
Query:    7 LPCTPQYEAAVFAAHRYRPWSAIRRLRRKRIPIIILQADKDSTAQPDTDQRVHRVRPDAAVTRVPGTSHFLPMERPYVVRDALRLIFEATVEGAGNVDYVGAVRRTIDDSVG 342
            L C P +EAA + A + RPW+AI  +++KR P I+LQ +K ST+  D DQR+H VRPDAAVTRVPGT+HFLPMERPYVVRDA+R++ E         DY+GAV+RTI+DS+G
Sbjct:  206 LACEPAWEAAGYRAQKNRPWAAIYSMKKKRFPFILLQGEKKSTSVSDIDQRIHSVRPDAAVTRVPGTTHFLPMERPYVVRDAIRILIETAAGLNDGTDYLGAVKRTINDSIG 317          
BLAST of mRNA_P-wetherbeei_contig51312.2.1 vs. uniprot
Match: C6XQN2_HIRBI (Alpha/beta hydrolase fold protein n=1 Tax=Hirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418) TaxID=582402 RepID=C6XQN2_HIRBI)

HSP 1 Score: 135 bits (340), Expect = 1.580e-36
Identity = 62/112 (55.36%), Postives = 85/112 (75.89%), Query Frame = 1
Query:    7 LPCTPQYEAAVFAAHRYRPWSAIRRLRRKRIPIIILQADKDSTAQPDTDQRVHRVRPDAAVTRVPGTSHFLPMERPYVVRDALRLIFEATVEGAGNVDYVGAVRRTIDDSVG 342
            L C P +EAA F + R RPWSA+  ++++R P I+LQA+K+ST+  D D+R+H  RPDAAVTRVPGT+HFLPMERPYV+RDA++++ E         DY+GAV+RTI+ S+G
Sbjct:  206 LACDPAWEAACFKSQRNRPWSALHSMKKQRYPFILLQAEKNSTSISDIDERIHAFRPDAAVTRVPGTTHFLPMERPYVLRDAIKILVETAAGLNDGTDYLGAVKRTINASIG 317          
BLAST of mRNA_P-wetherbeei_contig51312.2.1 vs. uniprot
Match: A0A2E4QNN4_9PROT (Alpha/beta hydrolase n=1 Tax=Hirschia sp. TaxID=2024835 RepID=A0A2E4QNN4_9PROT)

HSP 1 Score: 113 bits (282), Expect = 1.320e-27
Identity = 55/86 (63.95%), Postives = 69/86 (80.23%), Query Frame = 1
Query:   91 KRIPIIILQADKDSTAQPDTDQRVHRVRPDAAVTRVPGTSHFLPMERPYVVRDALRLIFEATVEGAGNVDYVGAVRRTIDDSVGIM 348
            K IP+IILQADK+ST   D D+RVH   PDAAVTR+PGT+HFLPMERPYVVRDAL +++  T  G    DY+GAV+RTI+D++G+M
Sbjct:  282 KNIPMIILQADKNSTCVEDMDRRVHAFLPDAAVTRIPGTTHFLPMERPYVVRDALDILYR-TRRGDFEDDYIGAVKRTINDAIGVM 366          
BLAST of mRNA_P-wetherbeei_contig51312.2.1 vs. uniprot
Match: A0A2D6GQV3_9PROT (Alpha/beta hydrolase n=5 Tax=Hyphomonadaceae TaxID=69657 RepID=A0A2D6GQV3_9PROT)

HSP 1 Score: 95.9 bits (237), Expect = 2.190e-21
Identity = 51/112 (45.54%), Postives = 70/112 (62.50%), Query Frame = 1
Query:    7 LPCTPQYEAAVFAAHRYRPWSAIRRLRRKRIPIIILQADKDSTAQPDTDQRVHRVRPDAAVTRVPGTSHFLPMERPYVVRDALRLIFEATVEGAGNVDYVGAVRRTIDDSVG 342
            L C+PQ+EAA F AHRYRPW+AI+ ++    PI++++A+K ST    + QR  + +P   V    GT+HFLPMERPYVVRDA+       VEG   V   G V+R +   +G
Sbjct:  206 LSCSPQWEAANFGAHRYRPWAAIQEIK---APIVLIRAEKGSTMPKPSLQRFMKAQPYTVVVEPAGTTHFLPMERPYVVRDAISEYLARFVEGF-EVGEEGRVQRNLGSHIG 313          
BLAST of mRNA_P-wetherbeei_contig51312.2.1 vs. uniprot
Match: UPI0003B65CB1 (alpha/beta hydrolase n=1 Tax=Ponticaulis koreensis TaxID=1123045 RepID=UPI0003B65CB1)

HSP 1 Score: 92.4 bits (228), Expect = 4.420e-20
Identity = 49/112 (43.75%), Postives = 68/112 (60.71%), Query Frame = 1
Query:    7 LPCTPQYEAAVFAAHRYRPWSAIRRLRRKRIPIIILQADKDSTAQPDTDQRVHRVRPDAAVTRVPGTSHFLPMERPYVVRDALRLIFEATVEGAGNVDYVGAVRRTIDDSVG 342
            L C PQ+EAA F AHRYRPW+A+  ++    PI++++A+K ST    +  R  + +P   V +  GT+HFLPMERPYVVRDA+       VEG   V   G V+R +   +G
Sbjct:  206 LSCAPQWEAANFGAHRYRPWAAVEEIK---APIVLIRAEKGSTMPKPSLHRFMKAQPYTVVLQPSGTTHFLPMERPYVVRDAISEYLARFVEGF-EVGDEGRVQRNLGSHIG 313          
BLAST of mRNA_P-wetherbeei_contig51312.2.1 vs. uniprot
Match: A0A059FQT1_9PROT (Alpha/beta fold family hydrolase n=1 Tax=Hyphomonas johnsonii MHS-2 TaxID=1280950 RepID=A0A059FQT1_9PROT)

HSP 1 Score: 90.9 bits (224), Expect = 1.890e-19
Identity = 48/107 (44.86%), Postives = 68/107 (63.55%), Query Frame = 1
Query:    7 LPCTPQYEAAVFAAHRYRPWSAIRRLRRKRIPIIILQADKDSTAQPDTDQRVHRVRPDAAVTRVPGTSHFLPMERPYVVRDALRLIFEATVEGAGNVDYVGAVRRTI 327
            L C P++EAAVFAA R RPW A+R++++KRIPI +L+ + DS        ++ ++ P+  + +V GTSHFLPME PY VRD L       VEG   V+  G V R++
Sbjct:  213 LLCEPKWEAAVFAAQRNRPWGAMRKVKKKRIPISVLRPNSDSVISGKVRAKLIQLNPNMVMKQVRGTSHFLPMEAPYEVRDQLSAFIARLVEGF-TVEEDGPVVRSL 318          
BLAST of mRNA_P-wetherbeei_contig51312.2.1 vs. uniprot
Match: A0A1F3A1B7_9PROT (Alpha/beta hydrolase n=1 Tax=Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_66_14 TaxID=1797225 RepID=A0A1F3A1B7_9PROT)

HSP 1 Score: 89.7 bits (221), Expect = 4.310e-19
Identity = 41/92 (44.57%), Postives = 60/92 (65.22%), Query Frame = 1
Query:    7 LPCTPQYEAAVFAAHRYRPWSAIRRLRRKRIPIIILQADKDSTAQPDTDQRVHRVRPDAAVTRVPGTSHFLPMERPYVVRDALRLIFEATVE 282
            L CTP++EA  F AHR+RPW+A+R++R+K+IPI+IL+ ++DS        ++ +  P   +  + GTSHFLPME PY +RD L       VE
Sbjct:  199 LLCTPKWEAKTFGAHRHRPWAALRKVRKKKIPIVILRPNRDSVISGKVRAQIIQQNPSLMMRGIRGTSHFLPMEAPYEIRDQLSAFIARLVE 290          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51312.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C5Z989_9BACT1.870e-5876.72Alpha/beta hydrolase n=1 Tax=Phycisphaerae bacteri... [more]
A0A258GYW3_9PROT7.510e-5875.00Alpha/beta hydrolase n=2 Tax=Alphaproteobacteria T... [more]
A0A4V1SUM2_9SPHN1.710e-5673.28Alpha/beta hydrolase n=1 Tax=Sphingomonadales bact... [more]
UPI0003813C609.180e-3958.93alpha/beta hydrolase n=1 Tax=Hirschia maritima Tax... [more]
C6XQN2_HIRBI1.580e-3655.36Alpha/beta hydrolase fold protein n=1 Tax=Hirschia... [more]
A0A2E4QNN4_9PROT1.320e-2763.95Alpha/beta hydrolase n=1 Tax=Hirschia sp. TaxID=20... [more]
A0A2D6GQV3_9PROT2.190e-2145.54Alpha/beta hydrolase n=5 Tax=Hyphomonadaceae TaxID... [more]
UPI0003B65CB14.420e-2043.75alpha/beta hydrolase n=1 Tax=Ponticaulis koreensis... [more]
A0A059FQT1_9PROT1.890e-1944.86Alpha/beta fold family hydrolase n=1 Tax=Hyphomona... [more]
A0A1F3A1B7_9PROT4.310e-1944.57Alpha/beta hydrolase n=1 Tax=Alphaproteobacteria b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51312contigP-wetherbeei_contig51312:201..554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog551275.KB899548_gene98
PFAMsAbhydrolase_1,Abhydrolase_6,Hydrolase_4
Model size354
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.88e-39
EggNOG OGsCOG2267@1|root,COG2267@2|Bacteria,1N8UK@1224|Proteobacteria,2U8Y2@28211|Alphaproteobacteria,43XCJ@69657|Hyphomonadaceae
Descriptionhydrolases or acyltransferases (alpha beta hydrolase superfamily)
Cds size351
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186770.8220656-CDS-P-wetherbeei_contig51312:200..5511683186770.8220656-CDS-P-wetherbeei_contig51312:200..551Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51312 201..551 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186770.8308704-UTR-P-wetherbeei_contig51312:551..5541683186770.8308704-UTR-P-wetherbeei_contig51312:551..554Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig51312 552..554 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51312.2.1prot_P-wetherbeei_contig51312.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51312 201..551 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51312.2.1

>prot_P-wetherbeei_contig51312.2.1 ID=prot_P-wetherbeei_contig51312.2.1|Name=mRNA_P-wetherbeei_contig51312.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=117bp
MLPCTPQYEAAVFAAHRYRPWSAIRRLRRKRIPIIILQADKDSTAQPDTD
QRVHRVRPDAAVTRVPGTSHFLPMERPYVVRDALRLIFEATVEGAGNVDY
VGAVRRTIDDSVGIMS*
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mRNA from alignment at P-wetherbeei_contig51312:201..554-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51312.2.1 ID=mRNA_P-wetherbeei_contig51312.2.1|Name=mRNA_P-wetherbeei_contig51312.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig51312:201..554- (Phaeothamnion wetherbeei SAG_119_79)
TTCATGCTGCCCTGCACACCGCAGTATGAGGCCGCCGTCTTCGCCGCGCA CCGCTATCGCCCTTGGTCCGCGATCCGCAGGCTCCGCCGCAAGCGCATCC CGATCATCATCCTGCAAGCCGACAAGGACTCCACGGCCCAGCCGGACACC GACCAGCGTGTGCATCGTGTCCGTCCAGACGCCGCGGTGACACGCGTGCC CGGCACGTCACACTTCCTGCCGATGGAGCGGCCCTACGTCGTGCGCGATG CGCTGCGGCTGATCTTCGAGGCGACCGTCGAGGGCGCGGGGAATGTCGAC TACGTCGGCGCTGTGAGACGCACCATCGACGACAGCGTCGGGATCATGTC CTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51312:201..554-

>mRNA_P-wetherbeei_contig51312.2.1 ID=mRNA_P-wetherbeei_contig51312.2.1|Name=mRNA_P-wetherbeei_contig51312.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=351bp|location=Sequence derived from alignment at P-wetherbeei_contig51312:201..554- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCCCTGCACACCGCAGTATGAGGCCGCCGTCTTCGCCGCGCACCG
CTATCGCCCTTGGTCCGCGATCCGCAGGCTCCGCCGCAAGCGCATCCCGA
TCATCATCCTGCAAGCCGACAAGGACTCCACGGCCCAGCCGGACACCGAC
CAGCGTGTGCATCGTGTCCGTCCAGACGCCGCGGTGACACGCGTGCCCGG
CACGTCACACTTCCTGCCGATGGAGCGGCCCTACGTCGTGCGCGATGCGC
TGCGGCTGATCTTCGAGGCGACCGTCGAGGGCGCGGGGAATGTCGACTAC
GTCGGCGCTGTGAGACGCACCATCGACGACAGCGTCGGGATCATGTCCTA
G
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