mRNA_P-wetherbeei_contig51312.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51312.1.1
Unique NamemRNA_P-wetherbeei_contig51312.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig51312.1.1 vs. uniprot
Match: A0A7C5VA72_9BACT (Lipid A biosynthesis acyltransferase n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A7C5VA72_9BACT)

HSP 1 Score: 121 bits (303), Expect = 6.770e-32
Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 1
Query:    1 GPGRYRVTVYEPFEPDASPDEKTAIYNTVLRINRFVEERIREAPDQWFWMHHRWPKEAWVKAGVM 195
            GPGRYRVTV+EPF PDA PDE  AIY TVLRIN++VE  IREAPDQWFWMH+RWPKEAWVKAGV+
Sbjct:  262 GPGRYRVTVHEPFLPDADPDEDRAIYKTVLRINQWVETCIREAPDQWFWMHNRWPKEAWVKAGVI 326          
BLAST of mRNA_P-wetherbeei_contig51312.1.1 vs. uniprot
Match: A0A4Q3D799_9SPHN (Lipid A biosynthesis acyltransferase (Fragment) n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A4Q3D799_9SPHN)

HSP 1 Score: 115 bits (289), Expect = 2.280e-30
Identity = 49/65 (75.38%), Postives = 56/65 (86.15%), Query Frame = 1
Query:    1 GPGRYRVTVYEPFEPDASPDEKTAIYNTVLRINRFVEERIREAPDQWFWMHHRWPKEAWVKAGVM 195
            G  RYRVT+ EPF PD+ PDE  AIYNTVLRIN+++E RIREAPDQWFWMH+RWPK+AW KAGVM
Sbjct:  200 GVARYRVTIDEPFMPDSDPDEDKAIYNTVLRINQWLERRIREAPDQWFWMHNRWPKDAWAKAGVM 264          
BLAST of mRNA_P-wetherbeei_contig51312.1.1 vs. uniprot
Match: A0A258GYF9_9PROT (Lipid A biosynthesis acyltransferase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A258GYF9_9PROT)

HSP 1 Score: 116 bits (291), Expect = 3.950e-30
Identity = 51/64 (79.69%), Postives = 56/64 (87.50%), Query Frame = 1
Query:    4 PGRYRVTVYEPFEPDASPDEKTAIYNTVLRINRFVEERIREAPDQWFWMHHRWPKEAWVKAGVM 195
            PGRYRVTV+EPF PDA PDE  AIYNTVLRIN++VE RIRE P QWFWMH+RWPKEAWVKA V+
Sbjct:  262 PGRYRVTVHEPFMPDADPDEDKAIYNTVLRINQWVEARIREHPGQWFWMHNRWPKEAWVKAEVV 325          
BLAST of mRNA_P-wetherbeei_contig51312.1.1 vs. uniprot
Match: A0A2E4QT08_9PROT (Lipid A biosynthesis acyltransferase n=1 Tax=Hirschia sp. TaxID=2024835 RepID=A0A2E4QT08_9PROT)

HSP 1 Score: 100 bits (248), Expect = 9.150e-24
Identity = 40/65 (61.54%), Postives = 51/65 (78.46%), Query Frame = 1
Query:    1 GPGRYRVTVYEPFEPDASPDEKTAIYNTVLRINRFVEERIREAPDQWFWMHHRWPKEAWVKAGVM 195
            G  RYR T Y+PF P++S  E   +YNT+L+IN F+EERIREAP+QWFW H+RWPK+AW  AGV+
Sbjct:  269 GLARYRATFYDPFHPESSGTEDENVYNTLLKINGFLEERIREAPEQWFWQHNRWPKQAWADAGVI 333          
BLAST of mRNA_P-wetherbeei_contig51312.1.1 vs. uniprot
Match: A0A2D9RC54_9PROT (Lipid A biosynthesis acyltransferase n=1 Tax=Ponticaulis sp. TaxID=2020902 RepID=A0A2D9RC54_9PROT)

HSP 1 Score: 97.1 bits (240), Expect = 1.100e-22
Identity = 42/65 (64.62%), Postives = 49/65 (75.38%), Query Frame = 1
Query:    1 GPGRYRVTVYEPFEPDASPDEKTAIYNTVLRINRFVEERIREAPDQWFWMHHRWPKEAWVKAGVM 195
            GPGR+RVTV+EP E   + D +  I  TV RIN FVEER+RE PDQWFWMH RWPKEAW  AG++
Sbjct:  255 GPGRFRVTVHEPIEIAKTGDLEADIRTTVERINAFVEERVRETPDQWFWMHRRWPKEAWRDAGII 319          
BLAST of mRNA_P-wetherbeei_contig51312.1.1 vs. uniprot
Match: A0A160U0P6_9ZZZZ (Lipid A biosynthesis lauroyl acyltransferase n=7 Tax=root TaxID=1 RepID=A0A160U0P6_9ZZZZ)

HSP 1 Score: 89.7 bits (221), Expect = 6.320e-20
Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = 1
Query:    1 GPGRYRVTVYEPFEPDASPDEKTAIYNTVLRINRFVEERIREAPDQWFWMHHRWPKEAWVKAGV 192
            GP R+R+T +EPF P+ + DE   I  +V RI  F+EE++R  PDQWFW H RWPKEAW  AG+
Sbjct:  255 GPARFRITFHEPFMPETTGDETADIQRSVQRITDFIEEQVRANPDQWFWQHRRWPKEAWKAAGI 318          
BLAST of mRNA_P-wetherbeei_contig51312.1.1 vs. uniprot
Match: A0A2E7EX77_9PROT (Lipid A biosynthesis acyltransferase n=6 Tax=Hyphomonadaceae TaxID=69657 RepID=A0A2E7EX77_9PROT)

HSP 1 Score: 89.7 bits (221), Expect = 6.320e-20
Identity = 38/64 (59.38%), Postives = 46/64 (71.88%), Query Frame = 1
Query:    1 GPGRYRVTVYEPFEPDASPDEKTAIYNTVLRINRFVEERIREAPDQWFWMHHRWPKEAWVKAGV 192
            GPGR+RVTV++   P  + D +  IY TV +IN F+E R+RE P QWFWMH RWPKEAW  AGV
Sbjct:  255 GPGRFRVTVHDAIVPQKTGDLEADIYATVEQINAFMEARVRETPGQWFWMHRRWPKEAWRDAGV 318          
BLAST of mRNA_P-wetherbeei_contig51312.1.1 vs. uniprot
Match: A0A2D7XTB0_9PROT (Lipid A biosynthesis acyltransferase n=1 Tax=Ponticaulis sp. TaxID=2020902 RepID=A0A2D7XTB0_9PROT)

HSP 1 Score: 89.4 bits (220), Expect = 9.030e-20
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 1
Query:    1 GPGRYRVTVYEPFEPDASPDEKTAIYNTVLRINRFVEERIREAPDQWFWMHHRWPKEAWVKA 186
            GPGR++V V+ PFE + + DEKT I  TV RIN++VE  ++ AP QWFWMH RWPKEAW +A
Sbjct:  255 GPGRFKVFVHAPFEVENTGDEKTDIRKTVERINQWVENEVQRAPGQWFWMHRRWPKEAWTEA 316          
BLAST of mRNA_P-wetherbeei_contig51312.1.1 vs. uniprot
Match: A0A7C8LVQ3_9CAUL (Lipid A biosynthesis lauroyl acyltransferase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A7C8LVQ3_9CAUL)

HSP 1 Score: 87.0 bits (214), Expect = 5.410e-19
Identity = 35/62 (56.45%), Postives = 47/62 (75.81%), Query Frame = 1
Query:   10 RYRVTVYEPFEPDASPDEKTAIYNTVLRINRFVEERIREAPDQWFWMHHRWPKEAWVKAGVM 195
            R+   V+EP   DA   ++ A+  ++ RIN F+E RIREAP+QWFW+H+RWPKEAWV+AGVM
Sbjct:  243 RFHAVVHEPLPVDADQPDEIALPASIARINAFMEARIREAPEQWFWVHNRWPKEAWVQAGVM 304          
BLAST of mRNA_P-wetherbeei_contig51312.1.1 vs. uniprot
Match: UPI00037F2456 (lysophospholipid acyltransferase family protein n=1 Tax=Hirschia maritima TaxID=1121961 RepID=UPI00037F2456)

HSP 1 Score: 86.7 bits (213), Expect = 1.030e-18
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 GPGRYRVTVYEPFEPDASPDEKTAIYNTVLRINRFVEERIREAPDQWFWMHHRWPKEAWVKAGVM 195
            GP RY VT ++P   D   +   A+  T+ +IN++VE+ IR+AP+QWFW H+RWPKEAW KAGVM
Sbjct:  264 GPARYTVTFHKPIWTDPDTETDVAVQTTLPKINQWVEDCIRQAPEQWFWQHNRWPKEAWQKAGVM 328          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51312.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C5VA72_9BACT6.770e-3281.54Lipid A biosynthesis acyltransferase n=1 Tax=Phyci... [more]
A0A4Q3D799_9SPHN2.280e-3075.38Lipid A biosynthesis acyltransferase (Fragment) n=... [more]
A0A258GYF9_9PROT3.950e-3079.69Lipid A biosynthesis acyltransferase n=2 Tax=Alpha... [more]
A0A2E4QT08_9PROT9.150e-2461.54Lipid A biosynthesis acyltransferase n=1 Tax=Hirsc... [more]
A0A2D9RC54_9PROT1.100e-2264.62Lipid A biosynthesis acyltransferase n=1 Tax=Ponti... [more]
A0A160U0P6_9ZZZZ6.320e-2054.69Lipid A biosynthesis lauroyl acyltransferase n=7 T... [more]
A0A2E7EX77_9PROT6.320e-2059.38Lipid A biosynthesis acyltransferase n=6 Tax=Hypho... [more]
A0A2D7XTB0_9PROT9.030e-2059.68Lipid A biosynthesis acyltransferase n=1 Tax=Ponti... [more]
A0A7C8LVQ3_9CAUL5.410e-1956.45Lipid A biosynthesis lauroyl acyltransferase n=2 T... [more]
UPI00037F24561.030e-1853.85lysophospholipid acyltransferase family protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51312contigP-wetherbeei_contig51312:1..198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog551789.ATVJ01000003_gene156
Preferred namemsbB
PFAMsLip_A_acyltrans
Model size198
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00037,RC00039
KEGG koko:K02517
KEGG ReactionR05146
KEGG Pathwayko00540,ko01100,map00540,map01100
KEGG ModuleM00060
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.42e-21
EggNOG OGsCOG1560@1|root,COG1560@2|Bacteria,1MVNI@1224|Proteobacteria,2TS2H@28211|Alphaproteobacteria,43WBC@69657|Hyphomonadaceae
EC2.3.1.241
DescriptionCOG1560 Lauroyl myristoyl acyltransferase
Cds size198
COG categoryM
BRITEko00000,ko00001,ko00002,ko01000,ko01005
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186770.7972379-CDS-P-wetherbeei_contig51312:0..1981683186770.7972379-CDS-P-wetherbeei_contig51312:0..198Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51312 1..198 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51312.1.1prot_P-wetherbeei_contig51312.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51312 1..198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51312.1.1

>prot_P-wetherbeei_contig51312.1.1 ID=prot_P-wetherbeei_contig51312.1.1|Name=mRNA_P-wetherbeei_contig51312.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=66bp
GPGRYRVTVYEPFEPDASPDEKTAIYNTVLRINRFVEERIREAPDQWFWM
HHRWPKEAWVKAGVM*
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mRNA from alignment at P-wetherbeei_contig51312:1..198+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51312.1.1 ID=mRNA_P-wetherbeei_contig51312.1.1|Name=mRNA_P-wetherbeei_contig51312.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=198bp|location=Sequence derived from alignment at P-wetherbeei_contig51312:1..198+ (Phaeothamnion wetherbeei SAG_119_79)
GGGCCGGGGCGCTACCGCGTCACCGTCTACGAGCCGTTCGAGCCGGATGC GTCACCCGACGAGAAGACGGCGATCTACAACACCGTGCTGCGCATCAACC GTTTCGTGGAAGAGCGTATCCGCGAGGCGCCGGACCAGTGGTTCTGGATG CACCACCGCTGGCCGAAGGAAGCCTGGGTCAAAGCTGGCGTGATGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51312:1..198+

>mRNA_P-wetherbeei_contig51312.1.1 ID=mRNA_P-wetherbeei_contig51312.1.1|Name=mRNA_P-wetherbeei_contig51312.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=198bp|location=Sequence derived from alignment at P-wetherbeei_contig51312:1..198+ (Phaeothamnion wetherbeei SAG_119_79)
GGGCCGGGGCGCTACCGCGTCACCGTCTACGAGCCGTTCGAGCCGGATGC
GTCACCCGACGAGAAGACGGCGATCTACAACACCGTGCTGCGCATCAACC
GTTTCGTGGAAGAGCGTATCCGCGAGGCGCCGGACCAGTGGTTCTGGATG
CACCACCGCTGGCCGAAGGAAGCCTGGGTCAAAGCTGGCGTGATGTAG
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