mRNA_P-wetherbeei_contig513.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig513.3.1
Unique NamemRNA_P-wetherbeei_contig513.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig513.3.1 vs. uniprot
Match: A0A7S3PWJ7_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PWJ7_9STRA)

HSP 1 Score: 160 bits (406), Expect = 8.370e-47
Identity = 74/103 (71.84%), Postives = 89/103 (86.41%), Query Frame = 1 
Query:    1 MVVRLRLQRFGRVNRPFYRVVAADARAPRDGKFIEIVGTYDPIANNDGIKEVRLKTERIRYWMSVGAQPSDRVGWLLGQFNVLPMPPRRATTLKHIPKKERRD 309
            M VRLRLQRFGR +RPFYR+VAAD+RAPRDGKF+EIVGTY+PIA  +GIKE+RLKT+R++YW+ VGAQPSDRV W+LG+F VLP PP R +  K IPKK+R D
Sbjct:    1 MPVRLRLQRFGRTHRPFYRMVAADSRAPRDGKFLEIVGTYNPIATKEGIKEIRLKTDRLKYWLGVGAQPSDRVSWILGKFGVLPPPPPRVSLQKMIPKKDRED 103
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BLAST of mRNA_P-wetherbeei_contig513.3.1 vs. uniprot
Match: A0A836CM62_9STRA (Putative 30S ribosomal protein S16 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM62_9STRA)

HSP 1 Score: 159 bits (403), Expect = 2.520e-46
Identity = 75/101 (74.26%), Postives = 84/101 (83.17%), Query Frame = 1 
Query:    1 MVVRLRLQRFGRVNRPFYRVVAADARAPRDGKFIEIVGTYDPIANNDGIKEVRLKTERIRYWMSVGAQPSDRVGWLLGQFNVLPMPPRRATTLKHIPKKER 303
            MVVRLRLQRFG  N+PFYRVVAADARAPRDGKFIEIVGTY+PI   DG KEVR   +RI YW+ VGA+PS+RV WLLGQFN+LP+ PRR  T  H+PKKER
Sbjct:    1 MVVRLRLQRFGHKNQPFYRVVAADARAPRDGKFIEIVGTYNPIPTRDGYKEVRFNRQRIEYWLGVGAEPSERVAWLLGQFNILPLVPRRIFTQNHLPKKER 101
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BLAST of mRNA_P-wetherbeei_contig513.3.1 vs. uniprot
Match: A0A7S2RKN7_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RKN7_9STRA)

HSP 1 Score: 159 bits (402), Expect = 3.360e-46
Identity = 72/101 (71.29%), Postives = 89/101 (88.12%), Query Frame = 1 
Query:    1 MVVRLRLQRFGRVNRPFYRVVAADARAPRDGKFIEIVGTYDPIANNDGIKEVRLKTERIRYWMSVGAQPSDRVGWLLGQFNVLPMPPRRATTLKHIPKKER 303
            MVVRLRLQRFGR + PFYR+VAAD+R+PRDGK +EI+GTY+PIAN +GIKE+RLKT+R+RYW+SVGAQPSDRVGW+LG+F +LP PP R    K +PKK+R
Sbjct:    1 MVVRLRLQRFGRTHSPFYRMVAADSRSPRDGKHLEILGTYNPIANKEGIKEIRLKTDRLRYWLSVGAQPSDRVGWILGKFGILPPPPPRYNPQKMVPKKDR 101
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BLAST of mRNA_P-wetherbeei_contig513.3.1 vs. uniprot
Match: A0A6U0J4Z2_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0J4Z2_9STRA)

HSP 1 Score: 158 bits (399), Expect = 1.010e-45
Identity = 72/101 (71.29%), Postives = 89/101 (88.12%), Query Frame = 1 
Query:    1 MVVRLRLQRFGRVNRPFYRVVAADARAPRDGKFIEIVGTYDPIANNDGIKEVRLKTERIRYWMSVGAQPSDRVGWLLGQFNVLPMPPRRATTLKHIPKKER 303
            MVVRLRLQRFGR + PFYR+VAAD RAPRDG+F+E+VGTY+PIAN+ GIKE+RLKT+R+RYW+SVGAQPSDRV W+LG+F VLP PP R +  K +P+K+R
Sbjct:    1 MVVRLRLQRFGRTHAPFYRMVAADGRAPRDGRFLELVGTYNPIANSAGIKEIRLKTDRLRYWLSVGAQPSDRVAWILGKFGVLPPPPPRYSVEKMVPRKDR 101
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BLAST of mRNA_P-wetherbeei_contig513.3.1 vs. uniprot
Match: A0A7S1H3T9_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H3T9_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.910e-45
Identity = 71/101 (70.30%), Postives = 90/101 (89.11%), Query Frame = 1 
Query:    1 MVVRLRLQRFGRVNRPFYRVVAADARAPRDGKFIEIVGTYDPIANNDGIKEVRLKTERIRYWMSVGAQPSDRVGWLLGQFNVLPMPPRRATTLKHIPKKER 303
            MVVRLRLQRFGR + PFYR+VAAD RAPRDGKF+E+VGTY+PIA+ DGIKE+RLKT+R++YW++VGAQPSDRV W+LG+F +LP PP+R +  + IPKK+R
Sbjct:    1 MVVRLRLQRFGRKHLPFYRMVAADHRAPRDGKFLEVVGTYNPIASKDGIKEIRLKTDRLKYWLAVGAQPSDRVAWILGKFGILPPPPQRYSPQRMIPKKDR 101
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BLAST of mRNA_P-wetherbeei_contig513.3.1 vs. uniprot
Match: K8ZAJ3_NANGC (Small subunit ribosomal protein S16 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8ZAJ3_NANGC)

HSP 1 Score: 158 bits (400), Expect = 5.930e-45
Identity = 71/103 (68.93%), Postives = 92/103 (89.32%), Query Frame = 1 
Query:    1 MVVRLRLQRFGRVNRPFYRVVAADARAPRDGKFIEIVGTYDPIANNDGIKEVRLKTERIRYWMSVGAQPSDRVGWLLGQFNVLPMPPRRATTLKHIPKKERRD 309
            MVVRLRLQRFGR +RPFYR+VAAD+RAPRDG+FIE +G+YDPIA+ DG+KEVRL ++RI+YW+SVGAQPSDRV WL+ ++N+LP  P R  TL+H+P+KER++
Sbjct:    1 MVVRLRLQRFGRHDRPFYRIVAADSRAPRDGRFIERLGSYDPIASKDGVKEVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLPEAPLRPMTLRHLPRKERKE 103
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BLAST of mRNA_P-wetherbeei_contig513.3.1 vs. uniprot
Match: A0A1Z5K548_FISSO (Small subunit ribosomal protein S16 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K548_FISSO)

HSP 1 Score: 155 bits (393), Expect = 7.890e-45
Identity = 69/101 (68.32%), Postives = 88/101 (87.13%), Query Frame = 1 
Query:    1 MVVRLRLQRFGRVNRPFYRVVAADARAPRDGKFIEIVGTYDPIANNDGIKEVRLKTERIRYWMSVGAQPSDRVGWLLGQFNVLPMPPRRATTLKHIPKKER 303
            MVVRLRLQRFGR + PFYR+VAA+  APRDGKF++IVGTY+PIAN DG+KE+RLKT+R++YW+SVGAQPSDRV W+LG+F +LP PP++ +  K +PK ER
Sbjct:    1 MVVRLRLQRFGRTHSPFYRMVAANNEAPRDGKFLDIVGTYNPIANRDGVKEIRLKTDRLKYWLSVGAQPSDRVSWILGKFGILPPPPKKFSPQKMVPKSER 101
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BLAST of mRNA_P-wetherbeei_contig513.3.1 vs. uniprot
Match: A0A7S1ZG56_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZG56_TRICV)

HSP 1 Score: 154 bits (390), Expect = 2.300e-44
Identity = 73/104 (70.19%), Postives = 88/104 (84.62%), Query Frame = 1 
Query:    1 MVVRLRLQRFGRVNRPFYRVVAADARAPRDGKFIEIVGTYDPIANNDGIKEVRLKTERIRYWMSVGAQPSDRVGWLLGQFNVLPMPPRRATTLKHIPKKERRDA 312
            MVVRLRLQRFG+   PFYR+VAA++RAPRDGKF EIVGTY+PIAN  GIKE+RLKT+R+RYW+SVGAQPSDRV W+LG+F +LP PP R +  + IPKK+R  A
Sbjct:    1 MVVRLRLQRFGQKKLPFYRMVAANSRAPRDGKFFEIVGTYNPIANASGIKEIRLKTDRLRYWLSVGAQPSDRVAWILGKFGILPPPPPRYSPQRMIPKKDREPA 104
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BLAST of mRNA_P-wetherbeei_contig513.3.1 vs. uniprot
Match: A0A7S2KAU0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KAU0_9STRA)

HSP 1 Score: 154 bits (390), Expect = 3.240e-44
Identity = 73/102 (71.57%), Postives = 87/102 (85.29%), Query Frame = 1 
Query:    1 MVVRLRLQRFGRVNRPFYRVVAADARAPRDGKFIEIVGTYDPIANNDGIKEVRLKTERIRYWMSVGAQPSDRVGWLLGQFNVLPMPPRRATTLKHIPKKERR 306
            MVVRLRLQRFGR + PFYR+VAAD RA RDGKF+EI+GTY+PIAN DGIKEVRLK++R +YW+SVGAQPSDRVGWLLG+F +LP PP      + IPK+ER+
Sbjct:   13 MVVRLRLQRFGRTHTPFYRIVAADHRARRDGKFLEILGTYNPIANKDGIKEVRLKSDRFKYWLSVGAQPSDRVGWLLGKFGILPPPPVPHRPQRSIPKEERK 114
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BLAST of mRNA_P-wetherbeei_contig513.3.1 vs. uniprot
Match: A0A7S1VML7_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VML7_9STRA)

HSP 1 Score: 153 bits (387), Expect = 6.520e-44
Identity = 71/101 (70.30%), Postives = 86/101 (85.15%), Query Frame = 1 
Query:    1 MVVRLRLQRFGRVNRPFYRVVAADARAPRDGKFIEIVGTYDPIANNDGIKEVRLKTERIRYWMSVGAQPSDRVGWLLGQFNVLPMPPRRATTLKHIPKKER 303
            MVVRLRLQRFG+ NRPFYR+VAA+ RAPRDGKF+EI+GTY+PIA   G+KE+RLKT+RI+YW+SVGAQPSDRV W+LG+F +LP PP R +T     KKER
Sbjct:    1 MVVRLRLQRFGKRNRPFYRMVAANVRAPRDGKFLEIIGTYNPIATRAGLKEIRLKTDRIKYWLSVGAQPSDRVSWILGKFGILPPPPPRFSTQAMFTKKER 101
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig513.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3PWJ7_9STRA8.370e-4771.84Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A836CM62_9STRA2.520e-4674.26Putative 30S ribosomal protein S16 n=1 Tax=Tribone... [more]
A0A7S2RKN7_9STRA3.360e-4671.29Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A6U0J4Z2_9STRA1.010e-4571.29Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S1H3T9_9STRA1.910e-4570.30Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
K8ZAJ3_NANGC5.930e-4568.93Small subunit ribosomal protein S16 n=3 Tax=Monodo... [more]
A0A1Z5K548_FISSO7.890e-4568.32Small subunit ribosomal protein S16 n=2 Tax=Fistul... [more]
A0A7S1ZG56_TRICV2.300e-4470.19Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2KAU0_9STRA3.240e-4471.57Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1VML7_9STRA6.520e-4470.30Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig513contigP-wetherbeei_contig513:2451..3460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog35128.Thaps32173
PFAMsRibosomal_S16
Model size809
Max annot lvl2836|Bacillariophyta
KEGG koko:K02959
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categorymitochondrion
Exons2
Evalue5.33e-45
EggNOG OGsCOG0228@1|root,KOG3419@2759|Eukaryota,2XDZ6@2836|Bacillariophyta
DescriptionRibosomal protein S16
Cds size510
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186770.6304348-UTR-P-wetherbeei_contig513:2450..27491683186770.6304348-UTR-P-wetherbeei_contig513:2450..2749Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig513 2451..2749 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186770.6420977-CDS-P-wetherbeei_contig513:2749..31511683186770.6420977-CDS-P-wetherbeei_contig513:2749..3151Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig513 2750..3151 -
1683186770.6520503-CDS-P-wetherbeei_contig513:3352..34601683186770.6520503-CDS-P-wetherbeei_contig513:3352..3460Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig513 3353..3460 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig513.3.1prot_P-wetherbeei_contig513.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig513 2750..3460 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig513.3.1

>prot_P-wetherbeei_contig513.3.1 ID=prot_P-wetherbeei_contig513.3.1|Name=mRNA_P-wetherbeei_contig513.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp
MVVRLRLQRFGRVNRPFYRVVAADARAPRDGKFIEIVGTYDPIANNDGIK
EVRLKTERIRYWMSVGAQPSDRVGWLLGQFNVLPMPPRRATTLKHIPKKE
RRDAAAAGKTGFHTMGLAARFAAGLDGLPGAVADCAASATTSAEMPRGGI
PTLGLSALWGVGLWVPRQT*
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mRNA from alignment at P-wetherbeei_contig513:2451..3460-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig513.3.1 ID=mRNA_P-wetherbeei_contig513.3.1|Name=mRNA_P-wetherbeei_contig513.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1010bp|location=Sequence derived from alignment at P-wetherbeei_contig513:2451..3460- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGTGCGGCTGCGGCTTCAACGCTTCGGCAGGGTCAACCGGCCCTT
CTATCGCGTCGTAGCTGCCGATGCTAGAGCGCCTCGAGACGGAAAGTTCA
TTGAAATCGTGAGTGAAGCCAAGTCCAGCCCCTAGGGTGGCAACAATGAA
GGACACGACAGAAGCGTTCCTAGGCTTCTCTGATACCGCTGGCACCTCAA
TATCGACAGCTTGCGTTCGAGCTTCCTGGCGTTCCCTTTTGTCGGCGAGT
GACTGAACCCTCCTCCGCTTCCCGCGCACTTGCTTGCGCGTTTTCTGACC
CTACAATAGGTCGGCACGTACGACCCCATTGCCAACAACGATGGCATCAA
GGAGGTGCGTTTAAAGACGGAGCGGATACGTTACTGGATGTCTGTTGGCG
CCCAGCCCAGCGATCGCGTTGGATGGCTTTTGGGCCAGTTCAACGTGCTA
CCTATGCCGCCGCGGCGGGCGACGACGCTGAAGCACATCCCGAAGAAAGA
GCGGCGCGATGCGGCGGCGGCAGGGAAGACGGGCTTCCATACTATGGGCC
TTGCCGCTCGCTTTGCGGCGGGCTTGGACGGCTTGCCAGGCGCCGTTGCG
GACTGCGCGGCTTCTGCGACGACGTCTGCCGAGATGCCAAGAGGGGGGAT
CCCGACCCTGGGGCTGTCAGCTCTCTGGGGTGTAGGGCTGTGGGTACCAC
GTCAGACATAAAGCGAGAGTCTTGTCCCCTTGCTTGTGTATGCAATCAGT
TTCCAGTGAGTGCAAGGAGCGCAGAGGAAAGATCTAGAGAGTTGACGAAG
GGACAGTTGAAAGGGTGAGTTGGATAGCATCGAAGGGCACTTTTCCAACG
CAGGCGCCGGGATAGTACCGAAAGGATGTACCTCATTTAATCCTCTGCGA
GCTAGTAGAAGCGCATGGAGCCCAGCGAATCCTTAGCATTCATGATTTCC
TCCGCACTCTGCACGGTGCAGCGGCGCCGGGAATCTCTTTACACGACACG
AAGCAAGAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig513:2451..3460-

>mRNA_P-wetherbeei_contig513.3.1 ID=mRNA_P-wetherbeei_contig513.3.1|Name=mRNA_P-wetherbeei_contig513.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig513:2451..3460- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGTGCGGCTGCGGCTTCAACGCTTCGGCAGGGTCAACCGGCCCTT
CTATCGCGTCGTAGCTGCCGATGCTAGAGCGCCTCGAGACGGAAAGTTCA
TTGAAATCGTCGGCACGTACGACCCCATTGCCAACAACGATGGCATCAAG
GAGGTGCGTTTAAAGACGGAGCGGATACGTTACTGGATGTCTGTTGGCGC
CCAGCCCAGCGATCGCGTTGGATGGCTTTTGGGCCAGTTCAACGTGCTAC
CTATGCCGCCGCGGCGGGCGACGACGCTGAAGCACATCCCGAAGAAAGAG
CGGCGCGATGCGGCGGCGGCAGGGAAGACGGGCTTCCATACTATGGGCCT
TGCCGCTCGCTTTGCGGCGGGCTTGGACGGCTTGCCAGGCGCCGTTGCGG
ACTGCGCGGCTTCTGCGACGACGTCTGCCGAGATGCCAAGAGGGGGGATC
CCGACCCTGGGGCTGTCAGCTCTCTGGGGTGTAGGGCTGTGGGTACCACG
TCAGACATAA
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