mRNA_P-wetherbeei_contig5127.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig5127.2.1 vs. uniprot
Match: D7G486_ECTSI (Mitochondrial TOM complex subunit, Tom40 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G486_ECTSI) HSP 1 Score: 120 bits (302), Expect = 2.990e-29 Identity = 71/163 (43.56%), Postives = 91/163 (55.83%), Query Frame = 1
Query: 16 YTGATCAGQLQVGKGPHVAASFNQAVTQQLALGADTTVNLEQNVAQSSYGLKYGRDGWFCTGLYNNGTMQAREAQYVRRVVPNRVTLATTLTAPLAKPGQAQFLLGSEFQLKQSRFNATVDGTGKIDVTLE--CQLLPTLSLTLT--GQLNHAEDKHRFGYGV 492
Y G TC+GQ+ +G GP S+NQAVT L++G + Q YG KY W G G AQY+RRVVP RVTL A L +Q ++G+EFQLKQS+ +A+VD GK+D TLE C PTL +TLT L+H+EDK FG +
Sbjct: 279 YHGDTCSGQISLGTGP-TEISYNQAVTPHLSMGGQGQFSSAQQAVGLLYGFKYNTPSWAVLGRLIGGGANVVTAQYLRRVVPGRVTLGAEYQAQLG--AGSQMMVGAEFQLKQSKMSASVDSNGKVDSTLELKCGTFPTLPVTLTISSSLDHSEDKQTFGLAL 438
BLAST of mRNA_P-wetherbeei_contig5127.2.1 vs. uniprot
Match: A0A836CIJ7_9STRA (Eukaryotic porin-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIJ7_9STRA) HSP 1 Score: 102 bits (254), Expect = 1.020e-22 Identity = 55/143 (38.46%), Postives = 80/143 (55.94%), Query Frame = 1
Query: 76 SFNQAVTQQLALGADTTVNLEQNVAQSSYGLKYGRDGWFCTGLYNNGTMQAREAQYVRRVVPNRVTLATTLTAPLAKPGQAQFLLGSEFQLKQSRFNATVDGTGKIDVTLECQLLPTLSLTLTGQLNHAEDKHRFGYGVHWQL 504
SFNQA+T +L G D T + + A S G +Y W LY G MQ + A++V RV L L +P ++ +G+EF LKQS+ + V+G+G +D +E + LP S++ GQLNH EDKHRFG+G+ +
Sbjct: 238 SFNQALTARLTAGMDCTYHAQMGDAPISVGGQYQTRDWTGNVLYGPGMMQLQYARHVNE----RVQLGAELALNPLRPQESAVAVGAEFNLKQSKLHFAVNGSGTVDGNIEVRFLPMASVSFAGQLNHVEDKHRFGFGMQMHV 376
BLAST of mRNA_P-wetherbeei_contig5127.2.1 vs. uniprot
Match: B8CCD5_THAPS (Tom40-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCD5_THAPS) HSP 1 Score: 67.4 bits (163), Expect = 2.880e-10 Identity = 49/156 (31.41%), Postives = 78/156 (50.00%), Query Frame = 1
Query: 49 VGKGPHVAASFNQAVTQQLALGADTTVNLEQNVAQSSYGLKYGRDGWFCTGLYNNGTMQAREAQ----YVRRVVPNRVTLATTLTAPLAKPGQAQFLLGSEFQLKQSRFNATVDGTGKIDVTLECQL---LPTLSLTLTGQLNHAEDKHRFGYGVH 495
+G G ++ Q+VT +LA+G + SSY KY + N+G R+ Y R + P+RV + +L A ++Q ++G+EF L +S+ N VDGTG+I TLE +L + SL +L+H + RFGYG++
Sbjct: 135 MGGGNVFGCNYFQSVTPRLAMGGEGMYIGANGNMMSSYTAKYSFNP------SNSGDGDERQGMLSLNYKRAITPSRVNIGASLECSPATL-ESQVMVGAEFNLTRSKMNVCVDGTGRIQSTLEAKLGREQGSPSLNFAAELDHGKSLMRFGYGLN 283
BLAST of mRNA_P-wetherbeei_contig5127.2.1 vs. uniprot
Match: A0A7S3PTN2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PTN2_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 1.120e-9 Identity = 56/202 (27.72%), Postives = 86/202 (42.57%), Query Frame = 1
Query: 7 DFNYTGATCAGQLQVGK---GPHVAASFNQAVTQQLALGADTTVNLEQNVAQSSYGLKYGR-------------------------------DGWFCTGLYNNGTMQAREAQYVRRVVPNRVTLATTLTAPLAKPGQAQFLLGSEFQLKQSRFNATVDGTGKIDVTLECQL-----LPTLSLTLTGQLNHAEDKHRFGYGVH 495
+ ++ G T G L+ G G ++ Q +TQ+LA+G + SSY LKY W C L+ T Y R V PNRVTL L + ++ +LG+EF L +S+ +DGTGK+ TLE +L +PTL+ + +++ A D +FGYG++
Sbjct: 168 ELDFGGMTWTGNLKYGSMGGGRVYGMNYYQGITQRLAMGGEGMYIAANGNMLSSYTLKYEMPAPAADDELPSSTSSITPEAPPQAQQLENQPSSWMCAQLHP--TQGMFNMHYKRVVTPNRVTLGAELN--MTPTLESTVMLGAEFNLTRSKVALGIDGTGKLQSTLETKLGRVPGVPTLNFS--SEVDFASDSMKFGYGLN 363
BLAST of mRNA_P-wetherbeei_contig5127.2.1 vs. uniprot
Match: UPI001CB99D4A (mitochondrial import receptor subunit TOM40-1-like n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB99D4A) HSP 1 Score: 64.3 bits (155), Expect = 4.290e-9 Identity = 47/165 (28.48%), Postives = 83/165 (50.30%), Query Frame = 1
Query: 1 MCDFNYTGATCAGQLQVGKGPHVAASFNQAVTQQLALGADTTVNLEQNVAQSSYGLKYGRDGWFCTGLYNNGTMQAREAQYVRRVVPNRVTLATTLTAP-LAKPGQAQFLLGSEFQLKQSRFNATVDGTGKIDVTLECQLLPTLSLTLTGQLNHAEDKHRFGYGV 492
M +F+Y G GQ+Q+G G V AS+ Q+VT L+LG + + + Y +Y D +G + M A YV++V +V+LAT L +++ A G ++ L+Q R +D G LE +L L+ ++ +++H + ++FG+G+
Sbjct: 146 MFNFDYKGTDYRGQMQLGNGGLVGASYIQSVTPHLSLGGEVFWAGQHRKSGLGYAARYSTDKMVTSGQIASTGMVA--LSYVQKV-SEKVSLATDLMYNYMSRDVTAS--CGYDYVLRQCRLRGKIDSNGCASAFLEERLNMGLNFLVSAEIDHRKKDYKFGFGL 305
BLAST of mRNA_P-wetherbeei_contig5127.2.1 vs. uniprot
Match: A0A0J9X9R0_GEOCN (Similar to Saccharomyces cerevisiae YMR203W TOM40 Component of the TOM (Translocase of outer membrane) complex responsible for recognition and initial import steps for all mitochondrially proteins n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X9R0_GEOCN) HSP 1 Score: 61.6 bits (148), Expect = 4.680e-8 Identity = 46/162 (28.40%), Postives = 78/162 (48.15%), Query Frame = 1
Query: 76 SFNQAVTQQLALGADTTVNLEQNVAQS-----SYGLKYGRDGWFC-TGLYNNGTMQAREAQYVRRVVPNRVTLATTLTAPLAKPGQAQF------------LLGSEFQLKQSRFNATVDGTGKIDVTLECQLLPTLSLTLTGQLNHAEDKHRFGYGVHWQLG 507
S QA+T +LALG +T + Q+VA S+ +Y W T L G + A + R+V ++V LA P A +G++++ +QS F +D GK+ LE ++LP +S+T G+++HA++ R G G+ ++ G
Sbjct: 199 SILQAITPKLALGLETVYSA-QSVAHPPDAAVSFVGRYVSGDWIASTQLQAQGALIA---SFYRKVT-DKVEAGVEANIGLANPQAAMMGGAEGPTVEGTTTIGAKYEFRQSVFRGQIDSNGKVSCLLERRVLPVVSVTFAGEIDHAKNSSRIGLGLQFEAG 355
BLAST of mRNA_P-wetherbeei_contig5127.2.1 vs. uniprot
Match: A0A1X6P7L0_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P7L0_PORUM) HSP 1 Score: 60.8 bits (146), Expect = 7.240e-8 Identity = 43/167 (25.75%), Postives = 82/167 (49.10%), Query Frame = 1
Query: 7 DFNYTGATCAGQLQVGKGPHVAASFNQAVTQQLALGADTTVNLEQNVAQSSYGLKYGRDGWFCTGLYNNGTMQAREAQYVRRVVPNRVTLATTLTAPLAKPGQAQFLLGSEFQLKQSRFNATVDGTGKIDVTLECQLLPTLSLTLTGQLNHAEDKHRFGYGVHWQLG 507
D + G+ ++VG +AAS+ Q+VT +++G +++ + + +KY G T + Y+RRV P R LA + A+ ++ G + L+ + VD G++ ++E ++ P S L+G+++HA ++RFG+G+ QLG
Sbjct: 148 DVEHRGSDAVSSVKVGNEGTLAASYLQSVTPTVSVGGQGFYQVKEQFSALTAAVKYADGGDLATATV--ASYGPVIVTYMRRVNP-RFALAAEMFVD-ARSRESLVTAGYRYDLRGATVVGQVDSNGRVATSVEEKIAPGFSFLLSGEVDHAAQEYRFGFGL--QLG 308
BLAST of mRNA_P-wetherbeei_contig5127.2.1 vs. uniprot
Match: A0A137PAX3_CONC2 (Uncharacterized protein n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137PAX3_CONC2) HSP 1 Score: 58.2 bits (139), Expect = 6.790e-7 Identity = 47/146 (32.19%), Postives = 74/146 (50.68%), Query Frame = 1
Query: 76 SFNQAVTQQLALGADT-----TVNLEQNVAQSSYGLKYGRDGWFCTGLYNN-GTMQAREAQYVRRVVPNRVTLATTLTAPLAKPGQ-AQFLLGSEFQLKQSRFNATVDGTGKIDVTLECQLLPTLSLTLTGQLNHAEDKHRFGYGV 492
S Q+VT LALGA+ T +E++ SY KY T + G +QA Y +V + L A +A+ + A LG++F +S F +D TG++ LE +L P+L+LTL+G L+H + + +FG G+
Sbjct: 184 SILQSVTPNLALGAEAIFQRPTTEIEES--SISYVAKYATPKSVLTANFQQPGLVQA---SYFHKV-NDMAEFGVELQALVAQGKRDAACTLGAKFDFVKSTFRTQIDTTGRVSAVLEERLAPSLTLTLSGDLDHLKGQSKFGIGL 323
BLAST of mRNA_P-wetherbeei_contig5127.2.1 vs. uniprot
Match: A0A7S4QT36_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QT36_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 4.310e-6 Identity = 55/183 (30.05%), Postives = 81/183 (44.26%), Query Frame = 1
Query: 7 DFNYTGATCAGQLQVGK---GPHVAASFNQAVTQQLALGADTTVNLEQNVAQSSYGLKYGRDG-WFCTGLYNN-----GTMQA--REAQ------YVRRVVPNRVTLATTLTAPLAKPGQAQFLLGSEFQLKQSRFNATVDGTGKIDVTLECQL---LPTLSLTLTGQLNHAEDKHRFGYGVH 495
+ ++ GAT G L+ G G ++ Q++T G + S+Y +KY + T L TM A AQ Y R V P RVTL L A A ++G EF +S+ VDG+G+I TLE +L + SLT +L+H ++ RFGYG++
Sbjct: 142 ELDFGGATWCGNLKYGSMGGGLVYGCNYIQSITSNWVAGGEGMYISANQSLLSNYMMKYTMEAPTIETSLDKEEEKPTSTMIASYNSAQSLLCFNYKRVVTPKRVTLGAELQCQPASLESA-VMVGGEFAFTRSKVGVVVDGSGRIQSTLETKLGREPGSPSLTFAAELDHGKNVMRFGYGLN 323
BLAST of mRNA_P-wetherbeei_contig5127.2.1 vs. uniprot
Match: A0A7S2UAF1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAF1_9STRA) HSP 1 Score: 51.2 bits (121), Expect = 2.120e-5 Identity = 33/80 (41.25%), Postives = 50/80 (62.50%), Query Frame = 1
Query: 241 YVRRVVPNRVTLATTLT-APLAKPGQAQFLLGSEFQLKQSRFNATVDGTGKIDVTLECQL--LP-TLSLTLTGQLNHAED 468
Y R V PNRVTL L +P++ +Q +G+EF+L++S+ VDGTG+I TLE +L P + SL +++HA+D
Sbjct: 26 YKRIVTPNRVTLGAELQCSPVSL--DSQVAIGAEFKLQRSKVCVCVDGTGRIQTTLEAKLGIAPGSPSLNFAAEVDHAKD 103 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5127.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig5127.2.1 >prot_P-wetherbeei_contig5127.2.1 ID=prot_P-wetherbeei_contig5127.2.1|Name=mRNA_P-wetherbeei_contig5127.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp MCDFNYTGATCAGQLQVGKGPHVAASFNQAVTQQLALGADTTVNLEQNVAback to top mRNA from alignment at P-wetherbeei_contig5127:2801..3967- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig5127.2.1 ID=mRNA_P-wetherbeei_contig5127.2.1|Name=mRNA_P-wetherbeei_contig5127.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1167bp|location=Sequence derived from alignment at P-wetherbeei_contig5127:2801..3967- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig5127:2801..3967- >mRNA_P-wetherbeei_contig5127.2.1 ID=mRNA_P-wetherbeei_contig5127.2.1|Name=mRNA_P-wetherbeei_contig5127.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig5127:2801..3967- (Phaeothamnion wetherbeei SAG_119_79)back to top |