mRNA_P-wetherbeei_contig5120.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5120.1.1
Unique NamemRNA_P-wetherbeei_contig5120.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5120.1.1 vs. uniprot
Match: A0A1L9SEG4_9EURO (PAN2-PAN3 deadenylation complex catalytic subunit PAN2 n=1 Tax=Penicilliopsis zonata CBS 506.65 TaxID=1073090 RepID=A0A1L9SEG4_9EURO)

HSP 1 Score: 55.1 bits (131), Expect = 1.330e-7
Identity = 23/40 (57.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:   13 VTSLSYDTMEELLWVGFEDGRIVSYLQPEMQAFTAVKAHP 132
             T+L++D ++ELLWVG E GRIVS+  PE+Q +T+V+AHP
Sbjct:   25 ATTLAFDDVQELLWVGNEYGRIVSFYGPELQRYTSVRAHP 64
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BLAST of mRNA_P-wetherbeei_contig5120.1.1 vs. uniprot
Match: A0A1B8ASI7_FUSPO (PAN2-PAN3 deadenylation complex catalytic subunit PAN2 n=5 Tax=Fusarium sambucinum species complex TaxID=569360 RepID=A0A1B8ASI7_FUSPO)

HSP 1 Score: 53.1 bits (126), Expect = 6.370e-7
Identity = 20/41 (48.78%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    7 SPVTSLSYDTMEELLWVGFEDGRIVSYLQPEMQAFTAVKAH 129
            +PVT++++DT++ELLW G + GR+ S+  PE+Q +T+ KAH
Sbjct:   23 TPVTTMTFDTVQELLWTGNDYGRVTSFYGPELQRYTSFKAH 63
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BLAST of mRNA_P-wetherbeei_contig5120.1.1 vs. uniprot
Match: A0A428QE16_9HYPO (PAB-dependent poly(A)-specific ribonuclease subunit pan2 n=7 Tax=Fusarium solani species complex TaxID=232080 RepID=A0A428QE16_9HYPO)

HSP 1 Score: 50.4 bits (119), Expect = 8.350e-7
Identity = 20/41 (48.78%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    7 SPVTSLSYDTMEELLWVGFEDGRIVSYLQPEMQAFTAVKAH 129
            +PVT++++DT +ELLW G E GR+ S+   E+Q +T+ KAH
Sbjct:   23 TPVTTMTFDTSQELLWTGNEFGRVTSFYGTELQRYTSFKAH 63
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BLAST of mRNA_P-wetherbeei_contig5120.1.1 vs. uniprot
Match: W2RSU1_9EURO (PAN2-PAN3 deadenylation complex catalytic subunit PAN2 n=1 Tax=Cyphellophora europaea CBS 101466 TaxID=1220924 RepID=W2RSU1_9EURO)

HSP 1 Score: 52.0 bits (123), Expect = 1.630e-6
Identity = 20/41 (48.78%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    7 SPVTSLSYDTMEELLWVGFEDGRIVSYLQPEMQAFTAVKAH 129
            SP T++ +D  +EL+W+G  DGR+VSY  PE++ +T+V+AH
Sbjct:   27 SPATAVIFDDSQELIWLGTNDGRVVSYHGPEVRKYTSVRAH 67
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BLAST of mRNA_P-wetherbeei_contig5120.1.1 vs. uniprot
Match: A0A162I093_METRR (PAN2-PAN3 deadenylation complex catalytic subunit PAN2 n=6 Tax=Opisthokonta TaxID=33154 RepID=A0A162I093_METRR)

HSP 1 Score: 52.0 bits (123), Expect = 1.630e-6
Identity = 19/41 (46.34%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    7 SPVTSLSYDTMEELLWVGFEDGRIVSYLQPEMQAFTAVKAH 129
            +PVT++++DT++ELLW G + GR+ S++  E+Q +T++KAH
Sbjct:   23 TPVTTMTFDTLQELLWTGNDYGRVTSFVGSELQRYTSLKAH 63
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BLAST of mRNA_P-wetherbeei_contig5120.1.1 vs. uniprot
Match: A0A2I2FL40_9EURO (PAN2-PAN3 deadenylation complex catalytic subunit PAN2 n=3 Tax=Aspergillus TaxID=5052 RepID=A0A2I2FL40_9EURO)

HSP 1 Score: 51.6 bits (122), Expect = 2.230e-6
Identity = 20/40 (50.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   13 VTSLSYDTMEELLWVGFEDGRIVSYLQPEMQAFTAVKAHP 132
             T++++D + ELLWVG E GRI S+  PE+Q +T+++AHP
Sbjct:   25 ATTIAFDDVSELLWVGNEYGRITSFYGPELQRYTSIRAHP 64
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BLAST of mRNA_P-wetherbeei_contig5120.1.1 vs. uniprot
Match: UPI001E8DF023 (poly(A)-specific ribonuclease n=1 Tax=Aspergillus melleus TaxID=138277 RepID=UPI001E8DF023)

HSP 1 Score: 51.6 bits (122), Expect = 2.230e-6
Identity = 22/42 (52.38%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    7 SPVTSLSYDTMEELLWVGFEDGRIVSYLQPEMQAFTAVKAHP 132
            S  T++++D + ELLWVG E GRI S+  PE+Q +T+V+AHP
Sbjct:   23 SVATTVAFDDVMELLWVGNEYGRITSFYGPELQRYTSVRAHP 64
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BLAST of mRNA_P-wetherbeei_contig5120.1.1 vs. uniprot
Match: A0A232LQ81_9EURO (PAN2-PAN3 deadenylation complex catalytic subunit PAN2 n=1 Tax=Elaphomyces granulatus TaxID=519963 RepID=A0A232LQ81_9EURO)

HSP 1 Score: 51.6 bits (122), Expect = 2.230e-6
Identity = 20/40 (50.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:   13 VTSLSYDTMEELLWVGFEDGRIVSYLQPEMQAFTAVKAHP 132
             T++++D +++LLWVG E GRI S+  PE+Q +T+V+AHP
Sbjct:   25 ATTIAFDDVQDLLWVGNEYGRITSFYGPELQRYTSVRAHP 64
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BLAST of mRNA_P-wetherbeei_contig5120.1.1 vs. uniprot
Match: E9EPN1_METRA (PAN2-PAN3 deadenylation complex catalytic subunit PAN2 n=9 Tax=Opisthokonta TaxID=33154 RepID=E9EPN1_METRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.230e-6
Identity = 20/41 (48.78%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    7 SPVTSLSYDTMEELLWVGFEDGRIVSYLQPEMQAFTAVKAH 129
            +PVT++++DT +ELLW G + GR+ S+L  E+Q +T+ KAH
Sbjct:   23 TPVTTMTFDTFQELLWTGNDYGRVTSFLGSELQRYTSFKAH 63
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BLAST of mRNA_P-wetherbeei_contig5120.1.1 vs. uniprot
Match: E9E4D2_METAQ (PAN2-PAN3 deadenylation complex catalytic subunit PAN2 n=1 Tax=Metarhizium acridum (strain CQMa 102) TaxID=655827 RepID=E9E4D2_METAQ)

HSP 1 Score: 51.6 bits (122), Expect = 2.230e-6
Identity = 20/41 (48.78%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    7 SPVTSLSYDTMEELLWVGFEDGRIVSYLQPEMQAFTAVKAH 129
            +PVT++++DT +ELLW G + GR+ S+L  E+Q +T+ KAH
Sbjct:   23 TPVTTMTFDTFQELLWTGNDYGRVTSFLGSELQRYTSFKAH 63
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5120.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1L9SEG4_9EURO1.330e-757.50PAN2-PAN3 deadenylation complex catalytic subunit ... [more]
A0A1B8ASI7_FUSPO6.370e-748.78PAN2-PAN3 deadenylation complex catalytic subunit ... [more]
A0A428QE16_9HYPO8.350e-748.78PAB-dependent poly(A)-specific ribonuclease subuni... [more]
W2RSU1_9EURO1.630e-648.78PAN2-PAN3 deadenylation complex catalytic subunit ... [more]
A0A162I093_METRR1.630e-646.34PAN2-PAN3 deadenylation complex catalytic subunit ... [more]
A0A2I2FL40_9EURO2.230e-650.00PAN2-PAN3 deadenylation complex catalytic subunit ... [more]
UPI001E8DF0232.230e-652.38poly(A)-specific ribonuclease n=1 Tax=Aspergillus ... [more]
A0A232LQ81_9EURO2.230e-650.00PAN2-PAN3 deadenylation complex catalytic subunit ... [more]
E9EPN1_METRA2.230e-648.78PAN2-PAN3 deadenylation complex catalytic subunit ... [more]
E9E4D2_METAQ2.230e-648.78PAN2-PAN3 deadenylation complex catalytic subunit ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5120contigP-wetherbeei_contig5120:569..700 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog655981.L8G226
Preferred namePAN2
PFAMsRNase_T,UCH_1
Model size132
Max annot lvl4751|Fungi
KEGG koko:K12571
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000288,GO:0000289,GO:0000932,GO:0000956,GO:0003674,GO:0003824,GO:0004843,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006401,GO:0006402,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016787,GO:0019222,GO:0019439,GO:0019538,GO:0019783,GO:0031251,GO:0032991,GO:0033554,GO:0034641,GO:0034655,GO:0035770,GO:0036211,GO:0036459,GO:0036464,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050896,GO:0051716,GO:0060255,GO:0065007,GO:0070011,GO:0070647,GO:0071704,GO:0090304,GO:0101005,GO:0140096,GO:1901360,GO:1901361,GO:1901564,GO:1901575,GO:1990904
Exons1
Evalue7.63e-08
EggNOG OGsCOG0847@1|root,KOG1275@2759|Eukaryota,38FWC@33154|Opisthokonta,3NW3B@4751|Fungi,3QKTS@4890|Ascomycota,20V37@147548|Leotiomycetes
EC3.1.13.4
DescriptionCatalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome- mediated 3'-5' exonucleolytic degradation, or deadenlyation- dependent mRNA decaping and subsequent 5'-3' exonucleolytic degradation by XRN1. May also be involved in post-transcriptional maturation of mRNA poly(A) tails
Cds size132
COG categoryL
BRITEko00000,ko00001,ko01000,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186769.6161172-CDS-P-wetherbeei_contig5120:568..7001683186769.6161172-CDS-P-wetherbeei_contig5120:568..700Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5120 569..700 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5120.1.1prot_P-wetherbeei_contig5120.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5120 569..700 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5120.1.1

>prot_P-wetherbeei_contig5120.1.1 ID=prot_P-wetherbeei_contig5120.1.1|Name=mRNA_P-wetherbeei_contig5120.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=44bp
NGSPVTSLSYDTMEELLWVGFEDGRIVSYLQPEMQAFTAVKAHP
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mRNA from alignment at P-wetherbeei_contig5120:569..700+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5120.1.1 ID=mRNA_P-wetherbeei_contig5120.1.1|Name=mRNA_P-wetherbeei_contig5120.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=132bp|location=Sequence derived from alignment at P-wetherbeei_contig5120:569..700+ (Phaeothamnion wetherbeei SAG_119_79)
AATGGGAGCCCCGTCACCTCGCTGTCCTACGACACTATGGAAGAGCTGCT
ATGGGTAGGCTTCGAGGACGGTCGCATTGTGTCCTACTTGCAGCCGGAGA
TGCAGGCGTTCACAGCAGTGAAGGCTCATCCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5120:569..700+

>mRNA_P-wetherbeei_contig5120.1.1 ID=mRNA_P-wetherbeei_contig5120.1.1|Name=mRNA_P-wetherbeei_contig5120.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=132bp|location=Sequence derived from alignment at P-wetherbeei_contig5120:569..700+ (Phaeothamnion wetherbeei SAG_119_79)
AATGGGAGCCCCGTCACCTCGCTGTCCTACGACACTATGGAAGAGCTGCT
ATGGGTAGGCTTCGAGGACGGTCGCATTGTGTCCTACTTGCAGCCGGAGA
TGCAGGCGTTCACAGCAGTGAAGGCTCATCCT
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