mRNA_P-wetherbeei_contig51186.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51186.1.1
Unique NamemRNA_P-wetherbeei_contig51186.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig51186.1.1 vs. uniprot
Match: UPI001C2F144E (hypothetical protein n=1 Tax=Mesorhizobium sp. GbtcB19 TaxID=2824764 RepID=UPI001C2F144E)

HSP 1 Score: 49.7 bits (117), Expect = 1.020e-5
Identity = 26/60 (43.33%), Postives = 36/60 (60.00%), Query Frame = 1 
Query:  100 SDIHRVRNFGEDLYRLFRNRNDASMPLEQIDDIQYFVTVKGRRR-VRQITRKIHELLIEH 276
            S IHR+RNFGEDL+R FR      + LE+ID     +T   RRR +++   ++H LL  H
Sbjct:   15 STIHRIRNFGEDLWRSFRESKQVEVDLEEIDRALDEITYLVRRRFLKRSLSEVHHLLKVH 74
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51186.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001C2F144E1.020e-543.33hypothetical protein n=1 Tax=Mesorhizobium sp. Gbt... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51186contigP-wetherbeei_contig51186:2..307 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size306
Hectar predicted targeting categoryother localisation
Exons1
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186769.339457-CDS-P-wetherbeei_contig51186:1..3071683186769.339457-CDS-P-wetherbeei_contig51186:1..307Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51186 2..307 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51186.1.1prot_P-wetherbeei_contig51186.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51186 2..307 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51186.1.1

>prot_P-wetherbeei_contig51186.1.1 ID=prot_P-wetherbeei_contig51186.1.1|Name=mRNA_P-wetherbeei_contig51186.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=102bp
NGERVRVRGGRLRRSVTSGRQNVAVVIKVVMAHSDIHRVRNFGEDLYRLF
RNRNDASMPLEQIDDIQYFVTVKGRRRVRQITRKIHELLIEHNLMANLSL
AD
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mRNA from alignment at P-wetherbeei_contig51186:2..307-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51186.1.1 ID=mRNA_P-wetherbeei_contig51186.1.1|Name=mRNA_P-wetherbeei_contig51186.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=306bp|location=Sequence derived from alignment at P-wetherbeei_contig51186:2..307- (Phaeothamnion wetherbeei SAG_119_79)
AACGGGGAGAGGGTTAGGGTGAGGGGCGGCCGCTTGCGCCGGTCTGTCAC
ATCGGGGAGACAGAACGTGGCCGTTGTCATCAAGGTTGTCATGGCCCATT
CGGACATCCATCGCGTTCGAAACTTCGGCGAAGACCTCTATCGCCTGTTT
CGAAACCGTAACGACGCATCTATGCCGTTGGAGCAGATCGACGACATCCA
ATATTTCGTAACTGTGAAAGGACGGCGCCGCGTTCGACAGATAACGCGGA
AGATTCATGAATTGCTCATTGAGCACAATCTAATGGCCAACCTATCTCTT
GCGGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51186:2..307-

>mRNA_P-wetherbeei_contig51186.1.1 ID=mRNA_P-wetherbeei_contig51186.1.1|Name=mRNA_P-wetherbeei_contig51186.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=306bp|location=Sequence derived from alignment at P-wetherbeei_contig51186:2..307- (Phaeothamnion wetherbeei SAG_119_79)
AACGGGGAGAGGGTTAGGGTGAGGGGCGGCCGCTTGCGCCGGTCTGTCAC
ATCGGGGAGACAGAACGTGGCCGTTGTCATCAAGGTTGTCATGGCCCATT
CGGACATCCATCGCGTTCGAAACTTCGGCGAAGACCTCTATCGCCTGTTT
CGAAACCGTAACGACGCATCTATGCCGTTGGAGCAGATCGACGACATCCA
ATATTTCGTAACTGTGAAAGGACGGCGCCGCGTTCGACAGATAACGCGGA
AGATTCATGAATTGCTCATTGAGCACAATCTAATGGCCAACCTATCTCTT
GCGGAT
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