mRNA_P-wetherbeei_contig51170.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51170.1.1
Unique NamemRNA_P-wetherbeei_contig51170.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig51170.1.1 vs. uniprot
Match: A0A8J6PGH8_9NOCA (SWIM-type domain-containing protein n=1 Tax=Aldersonia sp. TaxID=2768362 RepID=A0A8J6PGH8_9NOCA)

HSP 1 Score: 70.1 bits (170), Expect = 1.330e-14
Identity = 32/45 (71.11%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 MNSSMISKIEKAHRYAQEPERVSIGAMRAHFHGGHDDYEVSLDGE 135
            M+SSMI KIEKAHRYA EPER+ +    A FHGGHDDY VSLDG+
Sbjct:    1 MHSSMIGKIEKAHRYASEPERIRVRRFEATFHGGHDDYVVSLDGD 45
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BLAST of mRNA_P-wetherbeei_contig51170.1.1 vs. uniprot
Match: A0A7W0S689_9CHLR (SWIM-type domain-containing protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0S689_9CHLR)

HSP 1 Score: 65.5 bits (158), Expect = 8.650e-13
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 MNSSMISKIEKAHRYAQEPERVSIGAMRAHFHGGHDDYEVSLD 129
            MNSSMI KIEKAHRYA EP RV +  + A FHGGHDDY V+L+
Sbjct:    1 MNSSMIGKIEKAHRYAHEPHRVHLQGVSATFHGGHDDYTVALE 43
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BLAST of mRNA_P-wetherbeei_contig51170.1.1 vs. uniprot
Match: A0A838GBA7_9CHLR (SWIM-type domain-containing protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A838GBA7_9CHLR)

HSP 1 Score: 64.7 bits (156), Expect = 1.740e-12
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 MNSSMISKIEKAHRYAQEPERVSIGAMRAHFHGGHDDYEVSLD 129
            MNS MI KI+KAHRYAQEPER+ +    A FHG HD+Y VSLD
Sbjct:    1 MNSGMIGKIDKAHRYAQEPERMRVTGFNATFHGSHDEYTVSLD 43
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BLAST of mRNA_P-wetherbeei_contig51170.1.1 vs. uniprot
Match: A0A7V9VCC1_9CHLR (SWIM-type domain-containing protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9VCC1_9CHLR)

HSP 1 Score: 65.1 bits (157), Expect = 2.000e-12
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 MNSSMISKIEKAHRYAQEPERVSIGAMRAHFHGGHDDYEVSL 126
            M+SSMI KIEKAHRYA++PERV +  + A FHGGHDDY VSL
Sbjct:    1 MHSSMIGKIEKAHRYARQPERVRLQGISATFHGGHDDYVVSL 42
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BLAST of mRNA_P-wetherbeei_contig51170.1.1 vs. uniprot
Match: A0A7V9N2I8_9CHLR (SWIM-type domain-containing protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9N2I8_9CHLR)

HSP 1 Score: 64.7 bits (156), Expect = 2.070e-12
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 MNSSMISKIEKAHRYAQEPERVSIGAMRAHFHGGHDDYEVSL 126
            MNSSMI KIEKAHRYA+EPERV + ++ + FHGGHDD+ V L
Sbjct:    1 MNSSMIGKIEKAHRYAKEPERVLLHSLESTFHGGHDDHTVGL 42
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BLAST of mRNA_P-wetherbeei_contig51170.1.1 vs. uniprot
Match: A0A7V9HL73_9CHLR (SWIM-type domain-containing protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9HL73_9CHLR)

HSP 1 Score: 64.7 bits (156), Expect = 2.180e-12
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 MNSSMISKIEKAHRYAQEPERVSIGAMRAHFHGGHDDYEVSLD 129
            MNSSMI KIEKAHRYA+EPERV I A+ + F GGHD+Y V  D
Sbjct:    1 MNSSMIGKIEKAHRYAREPERVQIQAIESTFRGGHDEYHVRFD 43
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BLAST of mRNA_P-wetherbeei_contig51170.1.1 vs. uniprot
Match: A0A7V9VJF8_9CHLR (SWIM-type domain-containing protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9VJF8_9CHLR)

HSP 1 Score: 63.9 bits (154), Expect = 3.690e-12
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 MNSSMISKIEKAHRYAQEPERVSIGAMRAHFHGGHDDYEVSL 126
            MNSSMI KIEKAHRYA+EPER+S  + +A F GGHD Y V L
Sbjct:    1 MNSSMIGKIEKAHRYAREPERISFESFKASFQGGHDSYTVEL 42
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BLAST of mRNA_P-wetherbeei_contig51170.1.1 vs. uniprot
Match: A0A7W0TW84_9CHLR (SWIM-type domain-containing protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0TW84_9CHLR)

HSP 1 Score: 61.6 bits (148), Expect = 3.390e-11
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 MNSSMISKIEKAHRYAQEPERVSIGAMRAHFHGGHDDYEVSL 126
            MNSSMI KIEKAHRYA+EPERV +  + A F G HD+Y++ L
Sbjct:    1 MNSSMIGKIEKAHRYAKEPERVRLSCVEATFQGAHDEYQIRL 42
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BLAST of mRNA_P-wetherbeei_contig51170.1.1 vs. uniprot
Match: A0A6J4U4T0_9CHLR (SWIM-type domain-containing protein n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4U4T0_9CHLR)

HSP 1 Score: 62.8 bits (151), Expect = 5.870e-11
Identity = 29/42 (69.05%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 MNSSMISKIEKAHRYAQEPERVSIGAMRAHFHGGHDDYEVSL 126
            MNSSMI KIEKAHRYA EPER+   +  A F GGHDDY V L
Sbjct:   83 MNSSMIGKIEKAHRYAHEPERIRFSSFEATFRGGHDDYVVHL 124
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BLAST of mRNA_P-wetherbeei_contig51170.1.1 vs. uniprot
Match: A0A7V9I892_9CHLR (SWIM-type domain-containing protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9I892_9CHLR)

HSP 1 Score: 59.7 bits (143), Expect = 1.940e-10
Identity = 27/44 (61.36%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 MNSSMISKIEKAHRYAQEPERVSIGAMRAHFHGGHDDYEVSLDG 132
            MNS +I KIEKAHRYAQEPER+ I A+ A F+G +  Y++SL+G
Sbjct:    1 MNSGLIGKIEKAHRYAQEPERIRINAVTATFNGDNSSYDLSLEG 44
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51170.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J6PGH8_9NOCA1.330e-1471.11SWIM-type domain-containing protein n=1 Tax=Alders... [more]
A0A7W0S689_9CHLR8.650e-1369.77SWIM-type domain-containing protein n=1 Tax=Chloro... [more]
A0A838GBA7_9CHLR1.740e-1267.44SWIM-type domain-containing protein n=1 Tax=Chloro... [more]
A0A7V9VCC1_9CHLR2.000e-1271.43SWIM-type domain-containing protein n=1 Tax=Chloro... [more]
A0A7V9N2I8_9CHLR2.070e-1269.05SWIM-type domain-containing protein n=1 Tax=Chloro... [more]
A0A7V9HL73_9CHLR2.180e-1269.77SWIM-type domain-containing protein n=1 Tax=Chloro... [more]
A0A7V9VJF8_9CHLR3.690e-1269.05SWIM-type domain-containing protein n=1 Tax=Chloro... [more]
A0A7W0TW84_9CHLR3.390e-1164.29SWIM-type domain-containing protein n=1 Tax=Chloro... [more]
A0A6J4U4T0_9CHLR5.870e-1169.05SWIM-type domain-containing protein n=1 Tax=uncult... [more]
A0A7V9I892_9CHLR1.940e-1061.36SWIM-type domain-containing protein n=1 Tax=Chloro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51170contigP-wetherbeei_contig51170:3..140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog324602.Caur_0811
Model size138
Max annot lvl32061|Chloroflexia
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue3.19e-10
EggNOG OGs2EAGR@1|root,334K0@2|Bacteria,2G730@200795|Chloroflexi,375YA@32061|Chloroflexia
DescriptionPFAM zinc finger, SWIM domain protein
Cds size138
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186769.1861393-CDS-P-wetherbeei_contig51170:2..1401683186769.1861393-CDS-P-wetherbeei_contig51170:2..140Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51170 3..140 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51170.1.1prot_P-wetherbeei_contig51170.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51170 3..140 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51170.1.1

>prot_P-wetherbeei_contig51170.1.1 ID=prot_P-wetherbeei_contig51170.1.1|Name=mRNA_P-wetherbeei_contig51170.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=46bp
MNSSMISKIEKAHRYAQEPERVSIGAMRAHFHGGHDDYEVSLDGED
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mRNA from alignment at P-wetherbeei_contig51170:3..140-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51170.1.1 ID=mRNA_P-wetherbeei_contig51170.1.1|Name=mRNA_P-wetherbeei_contig51170.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=138bp|location=Sequence derived from alignment at P-wetherbeei_contig51170:3..140- (Phaeothamnion wetherbeei SAG_119_79)
ATGAATTCCAGCATGATCAGCAAGATCGAGAAGGCACACCGGTACGCACA
GGAGCCTGAGCGCGTCTCGATCGGCGCGATGCGGGCGCACTTCCATGGTG
GTCACGACGACTACGAGGTCTCCCTCGACGGTGAGGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51170:3..140-

>mRNA_P-wetherbeei_contig51170.1.1 ID=mRNA_P-wetherbeei_contig51170.1.1|Name=mRNA_P-wetherbeei_contig51170.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=138bp|location=Sequence derived from alignment at P-wetherbeei_contig51170:3..140- (Phaeothamnion wetherbeei SAG_119_79)
ATGAATTCCAGCATGATCAGCAAGATCGAGAAGGCACACCGGTACGCACA
GGAGCCTGAGCGCGTCTCGATCGGCGCGATGCGGGCGCACTTCCATGGTG
GTCACGACGACTACGAGGTCTCCCTCGACGGTGAGGAC
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