mRNA_P-wetherbeei_contig51157.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51157.1.1
Unique NamemRNA_P-wetherbeei_contig51157.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig51157.1.1 vs. uniprot
Match: D8LDN0_ECTSI (Zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDN0_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 7.460e-14
Identity = 27/46 (58.70%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:   22 CIVCFDHEVDCTLVPCGHHITCHSCAMKMKECPACRAPVERAVKVI 159
            CIVCF+ +VDCTLVPCGHH  C +CA + ++CP CRA VE+ ++ I
Sbjct:  115 CIVCFERKVDCTLVPCGHHCCCLTCAAQFEQCPVCRADVEQKIRAI 160
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BLAST of mRNA_P-wetherbeei_contig51157.1.1 vs. uniprot
Match: A0A6H5KTC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC5_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 8.390e-13
Identity = 27/46 (58.70%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:   22 CIVCFDHEVDCTLVPCGHHITCHSCAMKMKECPACRAPVERAVKVI 159
            CIVCF+ +VDCTLVPCGHH  C +CA + ++CP CRA VE+ ++ I
Sbjct:  631 CIVCFERKVDCTLVPCGHHCCCLTCAAQFEQCPVCRADVEQKIRAI 676
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BLAST of mRNA_P-wetherbeei_contig51157.1.1 vs. uniprot
Match: A0A6H5KTY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY3_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.150e-12
Identity = 29/46 (63.04%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   22 CIVCFDHEVDCTLVPCGHHITCHSCAMKMKECPACRAPVERAVKVI 159
            CIVCFD+EVDCTLVPCGHH  C +CA K   CP CR  V   +K I
Sbjct:  744 CIVCFDNEVDCTLVPCGHHCCCITCASKFSLCPVCRTTVTHKIKTI 789
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BLAST of mRNA_P-wetherbeei_contig51157.1.1 vs. uniprot
Match: D7FYF6_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF6_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.870e-12
Identity = 27/45 (60.00%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:   25 IVCFDHEVDCTLVPCGHHITCHSCAMKMKECPACRAPVERAVKVI 159
            +VCFD+EVDCTLVPCGHH  C +CA K   CP CR  V   +K I
Sbjct:   39 LVCFDNEVDCTLVPCGHHCCCITCASKFSLCPVCRTTVTHKIKTI 83
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BLAST of mRNA_P-wetherbeei_contig51157.1.1 vs. uniprot
Match: A0A6F9DMI9_9ASCI (E3 ubiquitin-protein ligase MYLIP n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DMI9_9ASCI)

HSP 1 Score: 62.0 bits (149), Expect = 8.080e-10
Identity = 23/48 (47.92%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:   13 AYDCIVCFDHEVDCTLVPCGHHITCHSCAMKMKECPACRAPVERAVKV 156
            A  C +CFD E++C  VPCGH + C SCA + + CP CR PV + + V
Sbjct:  430 ALSCRICFDSEIECAFVPCGHQVCCKSCAERCQNCPICRKPVTKTLVV 477
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BLAST of mRNA_P-wetherbeei_contig51157.1.1 vs. uniprot
Match: A0A6P7USA9_IXOSC (E3 ubiquitin-protein ligase NEURL1B-like n=3 Tax=Ixodes scapularis TaxID=6945 RepID=A0A6P7USA9_IXOSC)

HSP 1 Score: 58.5 bits (140), Expect = 9.920e-10
Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:   22 CIVCFDHEVDCTLVPCGHHITCHSCAMKM----KECPACRAPVERAVKVIK 162
            C +CFD ++DC LV CGH +TC++C +K+      CP CR P+++ VK  K
Sbjct:   54 CRLCFDKDIDCVLVDCGHLVTCYACGLKLFMGTPLCPVCRKPIKQLVKTFK 104
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BLAST of mRNA_P-wetherbeei_contig51157.1.1 vs. uniprot
Match: A0A6P7UJA6_IXOSC (E3 ubiquitin-protein ligase RNF34-like n=4 Tax=Ixodes TaxID=6944 RepID=A0A6P7UJA6_IXOSC)

HSP 1 Score: 58.5 bits (140), Expect = 9.920e-10
Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:   22 CIVCFDHEVDCTLVPCGHHITCHSCAMKM----KECPACRAPVERAVKVIK 162
            C +CFD ++DC LV CGH +TC++C +K+      CP CR P+++ VK  K
Sbjct:   54 CRLCFDKDIDCVLVDCGHLVTCYACGLKLFMGTPLCPVCRKPIKQLVKTFK 104
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BLAST of mRNA_P-wetherbeei_contig51157.1.1 vs. uniprot
Match: A0A4D5S260_IXOSC (Putative ring finger protein (Fragment) n=1 Tax=Ixodes scapularis TaxID=6945 RepID=A0A4D5S260_IXOSC)

HSP 1 Score: 58.5 bits (140), Expect = 7.790e-9
Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:   22 CIVCFDHEVDCTLVPCGHHITCHSCAMKM----KECPACRAPVERAVKVIK 162
            C +CFD ++DC LV CGH +TC++C +K+      CP CR P+++ VK  K
Sbjct:  182 CRLCFDKDIDCVLVDCGHLVTCYACGLKLFMGTPLCPVCRKPIKQLVKTFK 232
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BLAST of mRNA_P-wetherbeei_contig51157.1.1 vs. uniprot
Match: A0A6P7WCA1_IXOSC (protein neuralized n=2 Tax=Ixodes scapularis TaxID=6945 RepID=A0A6P7WCA1_IXOSC)

HSP 1 Score: 58.5 bits (140), Expect = 9.510e-9
Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:   22 CIVCFDHEVDCTLVPCGHHITCHSCAMKM----KECPACRAPVERAVKVIK 162
            C +CFD ++DC LV CGH +TC++C +K+      CP CR P+++ VK  K
Sbjct:  208 CRLCFDKDIDCVLVDCGHLVTCYACGLKLFMGTPLCPVCRKPIKQLVKTFK 258
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BLAST of mRNA_P-wetherbeei_contig51157.1.1 vs. uniprot
Match: A0A7T8HIT1_CALRO (Inhibitor of apoptosis 2 n=1 Tax=Caligus rogercresseyi TaxID=217165 RepID=A0A7T8HIT1_CALRO)

HSP 1 Score: 54.7 bits (130), Expect = 1.160e-8
Identity = 20/44 (45.45%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:   22 CIVCFDHEVDCTLVPCGHHITCHSCAMKMKECPACRAPVERAVK 153
            C +C D+E+    +PCGH I+C SCA  +++CP CR P++  VK
Sbjct:   14 CKICMDNEMGVVFLPCGHFISCTSCAPALQDCPYCRTPIKGTVK 57
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51157.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDN0_ECTSI7.460e-1458.70Zinc finger protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5KTC5_9PHAE8.390e-1358.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTY3_9PHAE1.150e-1263.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYF6_ECTSI1.870e-1260.00RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6F9DMI9_9ASCI8.080e-1047.92E3 ubiquitin-protein ligase MYLIP n=1 Tax=Phallusi... [more]
A0A6P7USA9_IXOSC9.920e-1045.10E3 ubiquitin-protein ligase NEURL1B-like n=3 Tax=I... [more]
A0A6P7UJA6_IXOSC9.920e-1045.10E3 ubiquitin-protein ligase RNF34-like n=4 Tax=Ixo... [more]
A0A4D5S260_IXOSC7.790e-945.10Putative ring finger protein (Fragment) n=1 Tax=Ix... [more]
A0A6P7WCA1_IXOSC9.510e-945.10protein neuralized n=2 Tax=Ixodes scapularis TaxID... [more]
A0A7T8HIT1_CALRO1.160e-845.45Inhibitor of apoptosis 2 n=1 Tax=Caligus rogercres... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51157contigP-wetherbeei_contig51157:387..554 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LDN0
PFAMszf-C3HC4_3
Model size168
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.22e-14
EggNOG OGs2E5R0@1|root,2SCHW@2759|Eukaryota
DescriptionZinc finger, C3HC4 type (RING finger)
Cds size168
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186768.9859533-CDS-P-wetherbeei_contig51157:386..5541683186768.9859533-CDS-P-wetherbeei_contig51157:386..554Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51157 387..554 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51157.1.1prot_P-wetherbeei_contig51157.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51157 387..554 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51157.1.1

>prot_P-wetherbeei_contig51157.1.1 ID=prot_P-wetherbeei_contig51157.1.1|Name=mRNA_P-wetherbeei_contig51157.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=56bp
ATAAAYDCIVCFDHEVDCTLVPCGHHITCHSCAMKMKECPACRAPVERAV
KVIKM*
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mRNA from alignment at P-wetherbeei_contig51157:387..554+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51157.1.1 ID=mRNA_P-wetherbeei_contig51157.1.1|Name=mRNA_P-wetherbeei_contig51157.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=168bp|location=Sequence derived from alignment at P-wetherbeei_contig51157:387..554+ (Phaeothamnion wetherbeei SAG_119_79)
GCGACGGCGGCCGCGTACGACTGCATAGTCTGTTTCGACCACGAAGTAGA
CTGCACACTGGTGCCCTGTGGCCACCACATAACTTGCCACTCGTGCGCCA
TGAAAATGAAGGAGTGTCCAGCCTGCCGGGCCCCCGTCGAGCGCGCTGTC
AAGGTCATCAAGATGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51157:387..554+

>mRNA_P-wetherbeei_contig51157.1.1 ID=mRNA_P-wetherbeei_contig51157.1.1|Name=mRNA_P-wetherbeei_contig51157.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=168bp|location=Sequence derived from alignment at P-wetherbeei_contig51157:387..554+ (Phaeothamnion wetherbeei SAG_119_79)
GCGACGGCGGCCGCGTACGACTGCATAGTCTGTTTCGACCACGAAGTAGA
CTGCACACTGGTGCCCTGTGGCCACCACATAACTTGCCACTCGTGCGCCA
TGAAAATGAAGGAGTGTCCAGCCTGCCGGGCCCCCGTCGAGCGCGCTGTC
AAGGTCATCAAGATGTGA
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