mRNA_P-wetherbeei_contig51143.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51143.1.1
Unique NamemRNA_P-wetherbeei_contig51143.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig51143.1.1 vs. uniprot
Match: A0A7W0NDN9_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0NDN9_9CHLR)

HSP 1 Score: 63.2 bits (152), Expect = 2.600e-9
Identity = 37/86 (43.02%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:   70 GLVDDTTYVSPQFGYTVTWGDPWTTRARNVTSNSGGFDALTLRNGSASLRITGR-AAGEDPAAVLDDAIALETNNAASATVDAQDA 324
            GL+++++YVSPQFGY+VTW  PWT   R  TS +  +D L L   +A+L++ G  AAG  PA  +D AI L+  +  + T+  Q A
Sbjct:   40 GLMEESSYVSPQFGYSVTWESPWTADPRLTTSVADRYDTLRLDARAAALQLFGAPAAGATPAEAIDVAIDLQREDDPATTIVTQSA 125
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BLAST of mRNA_P-wetherbeei_contig51143.1.1 vs. uniprot
Match: A0A6J4U217_9CHLR (Uncharacterized protein n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4U217_9CHLR)

HSP 1 Score: 62.8 bits (151), Expect = 3.600e-9
Identity = 39/88 (44.32%), Postives = 51/88 (57.95%), Query Frame = 1 
Query:   37 AAAAASAQADTGLVDDTTYVSPQFGYTVTWGDPWTTRARNVTSNSGGFDALTLRN---GSASLRITGRAAGEDPAAVLD---DAIALE 282
            AA   +AQ +TGLVD+T+Y SPQFGY V W DPW        S  GG D L L +      +L + G A+ ++PAA L+   DA+A E
Sbjct:   38 AAVPIAAQEETGLVDETSYESPQFGYEVAWDDPWAADEDATASEEGGSDILVLVSDDPAGTTLTVEGVASEDEPAAFLEERLDAVAEE 125
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BLAST of mRNA_P-wetherbeei_contig51143.1.1 vs. uniprot
Match: A0A7W0A1A9_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0A1A9_9CHLR)

HSP 1 Score: 57.0 bits (136), Expect = 3.750e-7
Identity = 27/50 (54.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:   52 SAQADTGLVDDTTYVSPQFGYTVTWGDPWTTRARNVTSNSGGFDALTLRN 201
            +AQ+D GLVD+TTY SPQF YTVTW  PW        S     D LTLR+
Sbjct:   32 AAQSDDGLVDETTYTSPQFAYTVTWDTPWVADEAGTRSRPDRDDVLTLRD 81
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51143.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7W0NDN9_9CHLR2.600e-943.02Uncharacterized protein (Fragment) n=1 Tax=Chlorof... [more]
A0A6J4U217_9CHLR3.600e-944.32Uncharacterized protein n=1 Tax=uncultured Thermom... [more]
A0A7W0A1A9_9CHLR3.750e-754.00Uncharacterized protein n=1 Tax=Chloroflexia bacte... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51143contigP-wetherbeei_contig51143:164..493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size330
Hectar predicted targeting categorysignal peptide
Exons1
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186768.8509328-CDS-P-wetherbeei_contig51143:163..4931683186768.8509328-CDS-P-wetherbeei_contig51143:163..493Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51143 164..493 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51143.1.1prot_P-wetherbeei_contig51143.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51143 164..493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51143.1.1

>prot_P-wetherbeei_contig51143.1.1 ID=prot_P-wetherbeei_contig51143.1.1|Name=mRNA_P-wetherbeei_contig51143.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=110bp
MLSVFTGVVAFPAAAAASAQADTGLVDDTTYVSPQFGYTVTWGDPWTTRA
RNVTSNSGGFDALTLRNGSASLRITGRAAGEDPAAVLDDAIALETNNAAS
ATVDAQDAAA
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mRNA from alignment at P-wetherbeei_contig51143:164..493+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51143.1.1 ID=mRNA_P-wetherbeei_contig51143.1.1|Name=mRNA_P-wetherbeei_contig51143.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig51143:164..493+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCAGCGTCTTCACGGGCGTCGTCGCCTTCCCGGCCGCGGCCGCGGC
CTCGGCGCAGGCCGACACCGGCCTGGTCGACGACACGACCTACGTCAGCC
CTCAGTTTGGCTACACCGTCACCTGGGGCGATCCCTGGACGACCCGAGCC
CGCAACGTGACCTCGAACAGCGGCGGATTCGACGCGCTGACCCTGCGCAA
CGGCAGCGCCAGCCTCCGCATCACCGGCCGCGCGGCGGGGGAGGACCCGG
CGGCAGTGCTGGATGACGCGATCGCGCTGGAGACGAACAACGCCGCCAGC
GCCACGGTCGACGCGCAGGACGCCGCCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51143:164..493+

>mRNA_P-wetherbeei_contig51143.1.1 ID=mRNA_P-wetherbeei_contig51143.1.1|Name=mRNA_P-wetherbeei_contig51143.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig51143:164..493+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCAGCGTCTTCACGGGCGTCGTCGCCTTCCCGGCCGCGGCCGCGGC
CTCGGCGCAGGCCGACACCGGCCTGGTCGACGACACGACCTACGTCAGCC
CTCAGTTTGGCTACACCGTCACCTGGGGCGATCCCTGGACGACCCGAGCC
CGCAACGTGACCTCGAACAGCGGCGGATTCGACGCGCTGACCCTGCGCAA
CGGCAGCGCCAGCCTCCGCATCACCGGCCGCGCGGCGGGGGAGGACCCGG
CGGCAGTGCTGGATGACGCGATCGCGCTGGAGACGAACAACGCCGCCAGC
GCCACGGTCGACGCGCAGGACGCCGCCGCC
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