mRNA_P-wetherbeei_contig51075.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51075.1.1
Unique NamemRNA_P-wetherbeei_contig51075.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig51075.1.1 vs. uniprot
Match: A0A7V2XMI2_9BURK (4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7V2XMI2_9BURK)

HSP 1 Score: 201 bits (511), Expect = 7.240e-63
Identity = 97/125 (77.60%), Postives = 110/125 (88.00%), Query Frame = 1 
Query:    1 GYMLGSRVQPHVTAAGMAILAMLGPLFWEPWLEVQTLRPFTSHTVLDKQQLRQSLLQAREQGWAISEQQLEMNYRGIAVPLWDHNDQLLGAMSVTMPMNNESSEAAVKRILPVLQETARSARPML 375
            GYMLGSRVQ HVTAAG+ I++M+GP  W+ WL  QTLRP+TSHTV+DK QLR  L QAR QGW ISEQQLEMNYRGIAVPL+DHND L+GA+S+TMPMNNESSEAA+KR+LPVLQETARS RPML
Sbjct:  133 GYMLGSRVQAHVTAAGIVIISMMGPAVWDDWLAAQTLRPYTSHTVMDKAQLRLCLEQARAQGWYISEQQLEMNYRGIAVPLYDHNDSLVGALSITMPMNNESSEAAIKRVLPVLQETARSMRPML 257
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BLAST of mRNA_P-wetherbeei_contig51075.1.1 vs. uniprot
Match: UPI0010F7A912 (helix-turn-helix domain-containing protein n=1 Tax=Hydrogenophaga sp. 2FB TaxID=2502187 RepID=UPI0010F7A912)

HSP 1 Score: 198 bits (504), Expect = 1.200e-61
Identity = 95/125 (76.00%), Postives = 112/125 (89.60%), Query Frame = 1 
Query:    1 GYMLGSRVQPHVTAAGMAILAMLGPLFWEPWLEVQTLRPFTSHTVLDKQQLRQSLLQAREQGWAISEQQLEMNYRGIAVPLWDHNDQLLGAMSVTMPMNNESSEAAVKRILPVLQETARSARPML 375
            GY+LGSRVQ H+TAAG+ IL  +G  +WEPWL+ QTLRPFTSH+VLDK  LRQS++ AREQGWA+SEQQLEMN+RGIAVPL+DHND+LLGAMSVTMPMNNE++  A+KRILPVLQETAR+ RPML
Sbjct:  145 GYLLGSRVQAHLTAAGLMILGAMGSAYWEPWLQRQTLRPFTSHSVLDKDVLRQSIVHAREQGWALSEQQLEMNFRGIAVPLYDHNDKLLGAMSVTMPMNNETTALALKRILPVLQETARAMRPML 269
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BLAST of mRNA_P-wetherbeei_contig51075.1.1 vs. uniprot
Match: A0A6P1J1K9_9BURK (Helix-turn-helix domain-containing protein n=1 Tax=Hydrogenophaga sp. BPS33 TaxID=2651974 RepID=A0A6P1J1K9_9BURK)

HSP 1 Score: 190 bits (483), Expect = 1.350e-58
Identity = 93/125 (74.40%), Postives = 109/125 (87.20%), Query Frame = 1 
Query:    1 GYMLGSRVQPHVTAAGMAILAMLGPLFWEPWLEVQTLRPFTSHTVLDKQQLRQSLLQAREQGWAISEQQLEMNYRGIAVPLWDHNDQLLGAMSVTMPMNNESSEAAVKRILPVLQETARSARPML 375
            GYMLGSRVQ H+TAAG+AIL  +G  F +PWL+ Q LRPFTSH+V+DK  LRQS+   RE+GWAISEQQLE+N+RGIAVPL+DHND LLGA+SVTMPMNNES+E AVKRILPVLQ+TAR+ RPML
Sbjct:  135 GYMLGSRVQAHLTAAGLAILGAMGSAFSDPWLQRQILRPFTSHSVIDKDVLRQSIAHTRERGWAISEQQLEVNFRGIAVPLYDHNDALLGALSVTMPMNNESTEVAVKRILPVLQDTARAMRPML 259
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BLAST of mRNA_P-wetherbeei_contig51075.1.1 vs. uniprot
Match: A0A060NGK3_9BURK (Transcriptional regulator n=5 Tax=Proteobacteria TaxID=1224 RepID=A0A060NGK3_9BURK)

HSP 1 Score: 178 bits (452), Expect = 6.630e-54
Identity = 87/125 (69.60%), Postives = 103/125 (82.40%), Query Frame = 1 
Query:    1 GYMLGSRVQPHVTAAGMAILAMLGPLFWEPWLEVQTLRPFTSHTVLDKQQLRQSLLQAREQGWAISEQQLEMNYRGIAVPLWDHNDQLLGAMSVTMPMNNESSEAAVKRILPVLQETARSARPML 375
            GY LGSRVQ HVTAAG+ IL MLGP  W PWLE QTLRP+T HT+ DK++LR    QAR QGW IS+QQLE+N+RG++V L+DH DQLLGA+SVTMP+NNES + AVKR+LPVLQETARS R +L
Sbjct:  135 GYTLGSRVQAHVTAAGIVILGMLGPAHWNPWLERQTLRPYTVHTLTDKERLRACFEQARLQGWFISDQQLELNFRGVSVALYDHKDQLLGALSVTMPINNESPDTAVKRVLPVLQETARSMRLLL 259
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BLAST of mRNA_P-wetherbeei_contig51075.1.1 vs. uniprot
Match: A0A2S9K7C7_9BURK (4-hydroxyphenylpyruvate dioxygenase n=4 Tax=Burkholderiales TaxID=80840 RepID=A0A2S9K7C7_9BURK)

HSP 1 Score: 173 bits (439), Expect = 6.130e-52
Identity = 87/125 (69.60%), Postives = 102/125 (81.60%), Query Frame = 1 
Query:    1 GYMLGSRVQPHVTAAGMAILAMLGPLFWEPWLEVQTLRPFTSHTVLDKQQLRQSLLQAREQGWAISEQQLEMNYRGIAVPLWDHNDQLLGAMSVTMPMNNESSEAAVKRILPVLQETARSARPML 375
            GYMLGSRVQ  VTAAG+ ILAM G   +EPWL  Q LR +TSHTV+D+ +LR+ L Q + QGWAISEQQLEMNYRGIAVPL+DH D L+ AMSVTMPM +ESSE A +R+LPVLQ+TARS RP+L
Sbjct:  135 GYMLGSRVQAQVTAAGLVILAMSGAEVYEPWLARQELRAYTSHTVVDRDELRRRLQQIQHQGWAISEQQLEMNYRGIAVPLYDHKDHLVAAMSVTMPMQSESSEDAARRVLPVLQDTARSMRPLL 259
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BLAST of mRNA_P-wetherbeei_contig51075.1.1 vs. uniprot
Match: C9YFY2_CURXX (IclR-ED domain-containing protein n=1 Tax=Curvibacter symbiont subsp. Hydra magnipapillata TaxID=667019 RepID=C9YFY2_CURXX)

HSP 1 Score: 152 bits (385), Expect = 3.200e-44
Identity = 73/125 (58.40%), Postives = 98/125 (78.40%), Query Frame = 1 
Query:    1 GYMLGSRVQPHVTAAGMAILAMLGPLFWEPWLEVQTLRPFTSHTVLDKQQLRQSLLQAREQGWAISEQQLEMNYRGIAVPLWDHNDQLLGAMSVTMPMNNESSEAAVKRILPVLQETARSARPML 375
            GY+LGSRVQ  VT+AGM ILAM  P + E WL+ +  + +TSHT+  K ++R  L + R+QGWA+SEQQLEMNYRG+AVPL D +  L+GA++VTMPM NES++ AV+R+LPVLQETAR+ R ++
Sbjct:   99 GYVLGSRVQAQVTSAGMLILAMRDPAWLEDWLQTRQFKAYTSHTIASKDRMRVELARIRQQGWAVSEQQLEMNYRGVAVPLIDRHGALMGALNVTMPMGNESTDDAVRRVLPVLQETARAMRNLI 223
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BLAST of mRNA_P-wetherbeei_contig51075.1.1 vs. uniprot
Match: A0A1Y0N5I9_9BURK (Pca operon regulatory protein n=2 Tax=Comamonadaceae TaxID=80864 RepID=A0A1Y0N5I9_9BURK)

HSP 1 Score: 152 bits (385), Expect = 1.110e-43
Identity = 73/125 (58.40%), Postives = 98/125 (78.40%), Query Frame = 1 
Query:    1 GYMLGSRVQPHVTAAGMAILAMLGPLFWEPWLEVQTLRPFTSHTVLDKQQLRQSLLQAREQGWAISEQQLEMNYRGIAVPLWDHNDQLLGAMSVTMPMNNESSEAAVKRILPVLQETARSARPML 375
            GY+LGSRVQ  VT+AGM ILAM  P + E WL+ +  + +TSHT+  K ++R  L + R+QGWA+SEQQLEMNYRG+AVPL D +  L+GA++VTMPM NES++ AV+R+LPVLQETAR+ R ++
Sbjct:  144 GYVLGSRVQAQVTSAGMLILAMRDPAWLEDWLQTRQFKAYTSHTIASKDRMRVELARIRQQGWAVSEQQLEMNYRGVAVPLIDRHGALMGALNVTMPMGNESTDDAVRRVLPVLQETARAMRNLI 268
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BLAST of mRNA_P-wetherbeei_contig51075.1.1 vs. uniprot
Match: A0A315DYP8_9BURK (4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Limnohabitans sp. 2KL-1 TaxID=1100699 RepID=A0A315DYP8_9BURK)

HSP 1 Score: 147 bits (372), Expect = 8.790e-42
Identity = 76/125 (60.80%), Postives = 93/125 (74.40%), Query Frame = 1 
Query:    1 GYMLGSRVQPHVTAAGMAILAMLGPLFWEPWLEVQTLRPFTSHTVLDKQQLRQSLLQAREQGWAISEQQLEMNYRGIAVPLWDHNDQLLGAMSVTMPMNNESSEAAVKRILPVLQETARSARPML 375
            GYMLGSRV   VTAAGMAIL+ L     + WL+   LR FTS T+  K +LR+ L   + QGW +SEQQLE+NYRGIAVPL D  +Q+ GA+SVTMP+NNE +E AVKR+LPV+QE ARS RP+L
Sbjct:  139 GYMLGSRVPAQVTAAGMAILSSLSDAQTDAWLDTHALRTFTSFTMSSKLELREHLQLFKRQGWVLSEQQLELNYRGIAVPLLDRQNQVHGAISVTMPINNEDAEHAVKRVLPVMQEAARSLRPLL 263
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BLAST of mRNA_P-wetherbeei_contig51075.1.1 vs. uniprot
Match: A0A7Y8H1I2_9BURK (Helix-turn-helix domain-containing protein n=4 Tax=Hydrogenophaga aromaticivorans TaxID=2610898 RepID=A0A7Y8H1I2_9BURK)

HSP 1 Score: 146 bits (368), Expect = 4.790e-41
Identity = 72/125 (57.60%), Postives = 93/125 (74.40%), Query Frame = 1 
Query:    1 GYMLGSRVQPHVTAAGMAILAMLGPLFWEPWLEVQTLRPFTSHTVLDKQQLRQSLLQAREQGWAISEQQLEMNYRGIAVPLWDHNDQLLGAMSVTMPMNNESSEAAVKRILPVLQETARSARPML 375
            GYMLGSRVQ  VTAAG AILA +G    + W+   TLR +T +T+   +QLR  L + R QGWA+SEQQ+E+NYRGIAVPL D N+ + GA+S+TMP+N E +E AVKR+LPVLQ+ AR  RP++
Sbjct:  151 GYMLGSRVQAQVTAAGSAILAAMGETASDAWIAQHTLRTYTPYTISSPEQLRSELARVRRQGWALSEQQMELNYRGIAVPLLDRNNDVHGAISITMPINQEVAEDAVKRVLPVLQDAARVMRPLI 275
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BLAST of mRNA_P-wetherbeei_contig51075.1.1 vs. uniprot
Match: A0A1F8VE25_9BURK (4-hydroxyphenylpyruvate dioxygenase n=5 Tax=Comamonadaceae TaxID=80864 RepID=A0A1F8VE25_9BURK)

HSP 1 Score: 145 bits (367), Expect = 5.660e-41
Identity = 72/125 (57.60%), Postives = 96/125 (76.80%), Query Frame = 1 
Query:    1 GYMLGSRVQPHVTAAGMAILAMLGPLFWEPWLEVQTLRPFTSHTVLDKQQLRQSLLQAREQGWAISEQQLEMNYRGIAVPLWDHNDQLLGAMSVTMPMNNESSEAAVKRILPVLQETARSARPML 375
            GY+LG+RV   VTAAGM +L+M  P + E WL  + LR +TSHT+  K +LR  L + R+QGWAISEQQLE+N+RG+AVPL D +  L+GA++VTMPM NES++ AV R+LPVLQETAR+ R ++
Sbjct:  144 GYVLGARVPAQVTAAGMLLLSMREPEWLERWLTTRDLRAYTSHTIASKDRLRVELARIRQQGWAISEQQLELNHRGVAVPLMDRHSVLVGALNVTMPMGNESTDDAVARVLPVLQETARAMRNLI 268
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51075.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V2XMI2_9BURK7.240e-6377.604-hydroxyphenylpyruvate dioxygenase n=1 Tax=Burkho... [more]
UPI0010F7A9121.200e-6176.00helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A6P1J1K9_9BURK1.350e-5874.40Helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A060NGK3_9BURK6.630e-5469.60Transcriptional regulator n=5 Tax=Proteobacteria T... [more]
A0A2S9K7C7_9BURK6.130e-5269.604-hydroxyphenylpyruvate dioxygenase n=4 Tax=Burkho... [more]
C9YFY2_CURXX3.200e-4458.40IclR-ED domain-containing protein n=1 Tax=Curvibac... [more]
A0A1Y0N5I9_9BURK1.110e-4358.40Pca operon regulatory protein n=2 Tax=Comamonadace... [more]
A0A315DYP8_9BURK8.790e-4260.804-hydroxyphenylpyruvate dioxygenase n=1 Tax=Limnoh... [more]
A0A7Y8H1I2_9BURK4.790e-4157.60Helix-turn-helix domain-containing protein n=4 Tax... [more]
A0A1F8VE25_9BURK5.660e-4157.604-hydroxyphenylpyruvate dioxygenase n=5 Tax=Comamo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51075contigP-wetherbeei_contig51075:177..554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1458427.BAWN01000021_gene1404
PFAMsHTH_IclR,IclR
Model size378
Max annot lvl28216|Betaproteobacteria
KEGG koko:K02624
Hectar predicted targeting categorysignal peptide
Exons1
Evalue6.55e-53
EggNOG OGsCOG1414@1|root,COG1414@2|Bacteria,1N957@1224|Proteobacteria,2VN36@28216|Betaproteobacteria,4ACZT@80864|Comamonadaceae
Descriptionhelix_turn_helix isocitrate lyase regulation
Cds size372
COG categoryK
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186767.836152-CDS-P-wetherbeei_contig51075:176..5481683186767.836152-CDS-P-wetherbeei_contig51075:176..548Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51075 177..548 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186767.84721-UTR-P-wetherbeei_contig51075:548..5541683186767.84721-UTR-P-wetherbeei_contig51075:548..554Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig51075 549..554 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51075.1.1prot_P-wetherbeei_contig51075.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51075 177..548 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51075.1.1

>prot_P-wetherbeei_contig51075.1.1 ID=prot_P-wetherbeei_contig51075.1.1|Name=mRNA_P-wetherbeei_contig51075.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=124bp
MLGSRVQPHVTAAGMAILAMLGPLFWEPWLEVQTLRPFTSHTVLDKQQLR
QSLLQAREQGWAISEQQLEMNYRGIAVPLWDHNDQLLGAMSVTMPMNNES
SEAAVKRILPVLQETARSARPML*
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mRNA from alignment at P-wetherbeei_contig51075:177..554-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51075.1.1 ID=mRNA_P-wetherbeei_contig51075.1.1|Name=mRNA_P-wetherbeei_contig51075.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig51075:177..554- (Phaeothamnion wetherbeei SAG_119_79)
GGCTACATGCTGGGCTCGCGCGTGCAGCCCCACGTGACGGCCGCAGGCAT
GGCGATCCTGGCCATGCTGGGCCCGTTGTTCTGGGAGCCGTGGCTGGAGG
TGCAGACGCTGCGCCCATTCACTTCGCACACGGTGCTGGACAAGCAGCAG
TTGCGCCAGAGCCTGCTGCAGGCGCGTGAGCAGGGCTGGGCCATTTCGGA
GCAGCAACTGGAGATGAACTACCGCGGCATCGCGGTGCCGCTGTGGGACC
ACAACGACCAGTTGCTCGGCGCCATGAGCGTGACCATGCCCATGAACAAC
GAGAGCAGCGAGGCCGCGGTCAAGCGCATCCTGCCGGTGCTGCAGGAAAC
CGCGCGCAGCGCAAGGCCCATGCTGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51075:177..554-

>mRNA_P-wetherbeei_contig51075.1.1 ID=mRNA_P-wetherbeei_contig51075.1.1|Name=mRNA_P-wetherbeei_contig51075.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig51075:177..554- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGGCTCGCGCGTGCAGCCCCACGTGACGGCCGCAGGCATGGCGAT
CCTGGCCATGCTGGGCCCGTTGTTCTGGGAGCCGTGGCTGGAGGTGCAGA
CGCTGCGCCCATTCACTTCGCACACGGTGCTGGACAAGCAGCAGTTGCGC
CAGAGCCTGCTGCAGGCGCGTGAGCAGGGCTGGGCCATTTCGGAGCAGCA
ACTGGAGATGAACTACCGCGGCATCGCGGTGCCGCTGTGGGACCACAACG
ACCAGTTGCTCGGCGCCATGAGCGTGACCATGCCCATGAACAACGAGAGC
AGCGAGGCCGCGGTCAAGCGCATCCTGCCGGTGCTGCAGGAAACCGCGCG
CAGCGCAAGGCCCATGCTGTGA
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