mRNA_P-wetherbeei_contig5100.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5100.3.1
Unique NamemRNA_P-wetherbeei_contig5100.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5100.3.1 vs. uniprot
Match: A0A835ZDW6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDW6_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 5.340e-12
Identity = 30/57 (52.63%), Postives = 43/57 (75.44%), Query Frame = 1
Query:    1 QSFLPFDTPHAAKERKMVNCGVVAFSLVKGTAVIGGKSRPAYKIEPGSVVEVYGGFE 171
            ++FLPF   HA+K++K+VNCGV+AF+L +GT       RPAYK++P S+  VYGGF+
Sbjct:  280 RNFLPFAARHASKQKKIVNCGVIAFTLQQGTL----NGRPAYKVDPASITVVYGGFK 332          
BLAST of mRNA_P-wetherbeei_contig5100.3.1 vs. uniprot
Match: D7FM29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM29_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 3.970e-10
Identity = 32/55 (58.18%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    7 FLPFDTPHAAKERKMVNCGVVAFSLVKGTAVIGGKSRPAYKIEPGSVVEVYGGFE 171
            FLP    H AK++KMVNCGVVAF+L  G      + R AYKIEP S+V VYGGF+
Sbjct:  445 FLPQSAVHDAKKKKMVNCGVVAFTLESGVY----EGRQAYKIEPDSIVSVYGGFK 495          
BLAST of mRNA_P-wetherbeei_contig5100.3.1 vs. uniprot
Match: A0A1E7F453_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F453_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.460e-9
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 1
Query:    1 QSFLPFDTPHAAKERKMVNCGVVAFSLVKGTAVIGGKSRPAYKIEPGSVVEVYGGFE 171
            ++FLP+ + H  K +K+VNCGVVAF+L+K   V+    +P Y I+P SV  VYGGF+
Sbjct:  114 RTFLPYKSDHVGKTKKVVNCGVVAFTLLK---VVRKSGQPTYMIDPNSVDVVYGGFD 167          
BLAST of mRNA_P-wetherbeei_contig5100.3.1 vs. uniprot
Match: R1C5L2_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C5L2_EMIHU)

HSP 1 Score: 52.0 bits (123), Expect = 2.460e-7
Identity = 25/59 (42.37%), Postives = 36/59 (61.02%), Query Frame = 1
Query:    1 QSFLPFDTPHAAKERKMVNCGVVAFSLVKGTAVIGGKSRPAYKIEPGSVVEVYGGFEAE 177
            Q +LP D+ H  K+RK+VNCG V  +L  G   +G      ++I+P S+  VYGGF A+
Sbjct:   10 QLYLPRDSDHPGKKRKIVNCGAVGLTLQVGRTAVG---EVVHRIDPESINVVYGGFSAK 65          
BLAST of mRNA_P-wetherbeei_contig5100.3.1 vs. uniprot
Match: A0A482SND6_9ARCH (Histidine phosphatase family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SND6_9ARCH)

HSP 1 Score: 55.1 bits (131), Expect = 3.740e-7
Identity = 25/56 (44.64%), Postives = 38/56 (67.86%), Query Frame = 1
Query:    1 QSFLPFDTPHAAKERKMVNCGVVAFSLVKGTAVIGGKSRPAYKIEPGSVVEVYGGF 168
            Q+FLP ++ H AK +K+ N GVV F++ + T ++    +P Y+I P S+V VYGGF
Sbjct:  295 QTFLPHESTHEAKSKKISNSGVVGFTIQQTTDLLTEDGQPRYRIMPDSLVVVYGGF 350          
BLAST of mRNA_P-wetherbeei_contig5100.3.1 vs. uniprot
Match: A0A7S1BPI9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BPI9_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.330e-6
Identity = 24/56 (42.86%), Postives = 36/56 (64.29%), Query Frame = 1
Query:    1 QSFLPFDTPHAAKERKMVNCGVVAFSLVKGTAVIGGKSRPAYKIEPGSVVEVYGGF 168
            ++FLP+DT H +K RK+VN G V F++++G    G      Y I+P S+  +YGGF
Sbjct:  117 RTFLPYDTQHVSKRRKLVNAGCVTFTVLRGERENGAL---VYMIDPKSIEVIYGGF 169          
BLAST of mRNA_P-wetherbeei_contig5100.3.1 vs. uniprot
Match: A0A7S2IFL9_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IFL9_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.330e-6
Identity = 24/57 (42.11%), Postives = 38/57 (66.67%), Query Frame = 1
Query:    1 QSFLPFDTPHAAKERKMVNCGVVAFSLVKGTAVIGGKSRPAYKIEPGSVVEVYGGFE 171
            ++FLP++  HA+K +K+VNCG VAF+L+K       K    Y I+P ++  +YGGF+
Sbjct:  345 RAFLPYNLDHASKTKKVVNCGAVAFTLMKTNHP---KEGVVYMIDPNTIEVIYGGFQ 398          
BLAST of mRNA_P-wetherbeei_contig5100.3.1 vs. uniprot
Match: A0A6T7VPM7_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A6T7VPM7_9CRYP)

HSP 1 Score: 52.8 bits (125), Expect = 2.460e-6
Identity = 29/57 (50.88%), Postives = 39/57 (68.42%), Query Frame = 1
Query:    1 QSFLPFDTPHAAKERKMVNCGVVAFSLVKGTAVIGGKSRPAYKIEPGSVVEVYGGFE 171
            Q+FL     H AK+RK+VNCGVVAF+L KGT  + GK    ++I+P S+  V GGF+
Sbjct:  298 QAFLGRAVEHQAKQRKIVNCGVVAFTLHKGT--VDGKE--LFRIDPESITVVTGGFK 350          
BLAST of mRNA_P-wetherbeei_contig5100.3.1 vs. uniprot
Match: A0A7S1BQA6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BQA6_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 3.360e-6
Identity = 24/56 (42.86%), Postives = 36/56 (64.29%), Query Frame = 1
Query:    1 QSFLPFDTPHAAKERKMVNCGVVAFSLVKGTAVIGGKSRPAYKIEPGSVVEVYGGF 168
            ++FLP+DT H +K RK+VN G V F++++G    G      Y I+P S+  +YGGF
Sbjct:  295 RTFLPYDTQHVSKRRKLVNAGCVTFTVLRGERENGAL---VYMIDPKSIEVIYGGF 347          
BLAST of mRNA_P-wetherbeei_contig5100.3.1 vs. uniprot
Match: A0A7S3WBQ8_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WBQ8_EMIHU)

HSP 1 Score: 52.0 bits (123), Expect = 4.460e-6
Identity = 25/59 (42.37%), Postives = 36/59 (61.02%), Query Frame = 1
Query:    1 QSFLPFDTPHAAKERKMVNCGVVAFSLVKGTAVIGGKSRPAYKIEPGSVVEVYGGFEAE 177
            Q +LP D+ H  K+RK+VNCG V  +L  G   +G      ++I+P S+  VYGGF A+
Sbjct:  257 QLYLPRDSDHPGKKRKIVNCGAVGLTLQVGRTAVG---EVVHRIDPESINVVYGGFSAK 312          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5100.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A835ZDW6_9STRA5.340e-1252.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FM29_ECTSI3.970e-1058.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1E7F453_9STRA1.460e-949.12Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
R1C5L2_EMIHU2.460e-742.37Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A482SND6_9ARCH3.740e-744.64Histidine phosphatase family protein n=1 Tax=archa... [more]
A0A7S1BPI9_9STRA1.330e-642.86Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2IFL9_9STRA1.330e-642.11Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6T7VPM7_9CRYP2.460e-650.88Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7S1BQA6_9STRA3.360e-642.86Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S3WBQ8_EMIHU4.460e-642.37Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5100contigP-wetherbeei_contig5100:3586..3792 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FM29
PFAMsHis_Phos_1
Model size207
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.51e-11
EggNOG OGs2ASAB@1|root,2RZPE@2759|Eukaryota
Cds size207
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186766.9525297-CDS-P-wetherbeei_contig5100:3585..37921683186766.9525297-CDS-P-wetherbeei_contig5100:3585..3792Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5100 3586..3792 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5100.3.1prot_P-wetherbeei_contig5100.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5100 3586..3792 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5100.3.1

>prot_P-wetherbeei_contig5100.3.1 ID=prot_P-wetherbeei_contig5100.3.1|Name=mRNA_P-wetherbeei_contig5100.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=69bp
QSFLPFDTPHAAKERKMVNCGVVAFSLVKGTAVIGGKSRPAYKIEPGSVV
EVYGGFEAEKKNGKKKLA*
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mRNA from alignment at P-wetherbeei_contig5100:3586..3792-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5100.3.1 ID=mRNA_P-wetherbeei_contig5100.3.1|Name=mRNA_P-wetherbeei_contig5100.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig5100:3586..3792- (Phaeothamnion wetherbeei SAG_119_79)
CAGTCGTTCCTGCCGTTCGACACGCCGCATGCCGCGAAGGAGCGCAAGAT GGTTAACTGCGGCGTGGTGGCCTTCTCGCTGGTCAAGGGGACCGCCGTCA TCGGCGGGAAGAGCCGGCCGGCCTACAAAATCGAGCCCGGCAGTGTGGTG GAGGTGTACGGTGGCTTCGAGGCGGAGAAGAAGAACGGGAAGAAGAAGCT TGCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5100:3586..3792-

>mRNA_P-wetherbeei_contig5100.3.1 ID=mRNA_P-wetherbeei_contig5100.3.1|Name=mRNA_P-wetherbeei_contig5100.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig5100:3586..3792- (Phaeothamnion wetherbeei SAG_119_79)
CAGTCGTTCCTGCCGTTCGACACGCCGCATGCCGCGAAGGAGCGCAAGAT
GGTTAACTGCGGCGTGGTGGCCTTCTCGCTGGTCAAGGGGACCGCCGTCA
TCGGCGGGAAGAGCCGGCCGGCCTACAAAATCGAGCCCGGCAGTGTGGTG
GAGGTGTACGGTGGCTTCGAGGCGGAGAAGAAGAACGGGAAGAAGAAGCT
TGCCTGA
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