mRNA_P-wetherbeei_contig5100.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5100.2.1
Unique NamemRNA_P-wetherbeei_contig5100.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5100.2.1 vs. uniprot
Match: D7FM28_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM28_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 2.700e-19
Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    1 MEDSRLQSLHDTLRKLQPKGNHGGLGMRGGLVGGHRTLDNGLPKNGLYSFFVREGHFHRKFDDDND 198
            MEDS+LQ LHDTL+KL PKGNHGGLG  G + GG +  DNGLPKNGLYS+FV+ GHF   F D +D
Sbjct:    1 MEDSKLQRLHDTLKKLAPKGNHGGLGSAGLVKGGFKQRDNGLPKNGLYSYFVKPGHFKTTFADSDD 66
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BLAST of mRNA_P-wetherbeei_contig5100.2.1 vs. uniprot
Match: A0A6H5L1A4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A4_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.340e-18
Identity = 43/63 (68.25%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    1 MEDSRLQSLHDTLRKLQPKGNHGGLGMRGGLVGGHRTLDNGLPKNGLYSFFVREGHFHRKFDD 189
            MEDS+LQ LHDTL+KL PKGNHGGLG  G + GG +  DNGLPKNGLYS+FV+ GHF   F D
Sbjct:    1 MEDSKLQRLHDTLKKLAPKGNHGGLGSAGLVRGGFKQRDNGLPKNGLYSYFVKPGHFKTTFAD 63
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BLAST of mRNA_P-wetherbeei_contig5100.2.1 vs. uniprot
Match: A0A835ZCI6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCI6_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 3.440e-17
Identity = 46/67 (68.66%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:    1 MEDSRLQSLHDTLRKLQPKGNHGGLGMRGGLVG-GHRTLDNGLPKNGLYSFFVREGHFHRKFDDDND 198
            MED +LQ LHDTL KL+P GNHG LG R    G GH   DNGLPKNGLYSFFVREGHF +KF D +D
Sbjct:    1 MEDWKLQQLHDTLAKLRPTGNHG-LGSRSQTTGIGHAHRDNGLPKNGLYSFFVREGHFKKKFADSDD 66
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BLAST of mRNA_P-wetherbeei_contig5100.2.1 vs. uniprot
Match: A0A1V9Z780_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z780_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 7.330e-13
Identity = 39/68 (57.35%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:    1 MEDSRLQSLHDTLRKLQPKGNHGGLGMRGGLVG--GHRTLDNGLPKNGLYSFFVREGH---FHRKFDD 189
            ME S+L +LHD L++L+PKG  GGLG  GG  G   H   D+GLP NGLYS FVREGH    H+ FDD
Sbjct:    1 MEASKLVALHDMLQRLRPKGKSGGLGSGGGSFGLKSHGPRDDGLPNNGLYSMFVREGHGGYAHKHFDD 68
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BLAST of mRNA_P-wetherbeei_contig5100.2.1 vs. uniprot
Match: W4FW14_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FW14_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 8.070e-13
Identity = 45/80 (56.25%), Postives = 56/80 (70.00%), Query Frame = 1 
Query:    1 MEDSRLQSLHDTLRKLQPKGNHGGLGMRGGLVGGHR-TLDNGLPKNGLYSFFVREGH---FHRKFDDDNDGGNAADDGEE 228
            ME+S+L  LHD L+KL+PKG  GGLG  GGL+  ++   D+GLP NGLYS FVREGH    H+ FDD ND   AAD+ +E
Sbjct:    1 MEESKLLRLHDMLQKLRPKGK-GGLGSSGGLMSKNQGPRDDGLPDNGLYSMFVREGHGGYVHKHFDDKND---AADNNDE 76
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BLAST of mRNA_P-wetherbeei_contig5100.2.1 vs. uniprot
Match: A0A1V9ZL60_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZL60_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.020e-12
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:    1 MEDSRLQSLHDTLRKLQPKGNHGGLGMRGGLVG--GHRTLDNGLPKNGLYSFFVREGH---FHRKFDDD 192
            ME S+L +LHD L++L+PKG  GGLG+ GG  G   H   D+GLP NGLY+ FVREGH    H+ F++D
Sbjct:    1 MESSKLVALHDMLQRLRPKGKSGGLGLGGGSAGLKSHGPRDDGLPNNGLYTMFVREGHGGYSHKHFEED 69
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BLAST of mRNA_P-wetherbeei_contig5100.2.1 vs. uniprot
Match: K8YXB4_NANGC (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YXB4_NANGC)

HSP 1 Score: 74.3 bits (181), Expect = 3.840e-12
Identity = 37/65 (56.92%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    1 MEDSRLQSLHDTLRKLQPKGNHGGLGMRGGLVGGHRTLDNGLPKNGLYSFFVREGHF-HRKFDDD 192
            MED R+Q LHDTL KL+P+G  GGLG   G   G +  D+GLPKNGLY++FVR GH  ++K+ DD
Sbjct:    1 MEDDRMQRLHDTLDKLRPRGKTGGLGFNSGF--GPKKTDDGLPKNGLYAYFVRAGHGGYKKWGDD 63
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BLAST of mRNA_P-wetherbeei_contig5100.2.1 vs. uniprot
Match: A0A067CJ81_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CJ81_SAPPC)

HSP 1 Score: 72.0 bits (175), Expect = 5.050e-12
Identity = 37/68 (54.41%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:    1 MEDSRLQSLHDTLRKLQPKGNHGGLGMRGGL-VGGHRTLDNGLPKNGLYSFFVREGH---FHRKFDDD 192
            ME S+L +LHD L++L+PKG  GGLG  G   +  H   D+GLP NGLYS FVREGH    H+ F+DD
Sbjct:    1 MEQSKLVALHDMLQRLRPKGKSGGLGSGGSFGLKSHGPRDDGLPNNGLYSMFVREGHGGYAHKHFEDD 68
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BLAST of mRNA_P-wetherbeei_contig5100.2.1 vs. uniprot
Match: A0A024U5Z8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U5Z8_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.630e-10
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:    1 MEDSRLQSLHDTLRKLQPKGNHGGLGMRGGLVGGHR-TLDNGLPKNGLYSFFVREGH---FHRKFDD 189
            ME+S+L  LHD L++L+PKG  GGLG  GGL+  ++   D+GLP NGLYS FVREGH    H+ FD+
Sbjct:    1 MEESKLVRLHDMLQRLRPKGK-GGLGSGGGLMSKNQGPRDDGLPNNGLYSMFVREGHGGYVHKHFDE 66
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BLAST of mRNA_P-wetherbeei_contig5100.2.1 vs. uniprot
Match: A0A024GBG7_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GBG7_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.210e-10
Identity = 37/70 (52.86%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:    1 MEDSRLQSLHDTLRKLQPKGNHGGLGMRGGLVG-GHRTLDNGLPKNGLYSFFVREGH---FHRKFDDDND 198
            MED +L  LHD L +L+P G  GGLG     VG G     +GLP NGLYS FVREGH    H++F DD D
Sbjct:    1 MEDEKLVQLHDVLSRLRPGGRKGGLGYSNLAVGNGKSGRTDGLPDNGLYSMFVREGHNAHLHQRFGDDGD 70
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5100.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM28_ECTSI2.700e-1966.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1A4_9PHAE1.340e-1868.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZCI6_9STRA3.440e-1768.66Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1V9Z780_9STRA7.330e-1357.35Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
W4FW14_9STRA8.070e-1356.25Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A1V9ZL60_9STRA1.020e-1253.62Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
K8YXB4_NANGC3.840e-1256.92Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
A0A067CJ81_SAPPC5.050e-1254.41Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A024U5Z8_9STRA1.630e-1055.22Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A024GBG7_9STRA2.210e-1052.86Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5100contigP-wetherbeei_contig5100:1386..2567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FM28
Model size618
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.42e-20
EggNOG OGs2E11N@1|root,2S8EB@2759|Eukaryota
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_010440.1
Cds size618
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186766.8800464-CDS-P-wetherbeei_contig5100:1385..14511683186766.8800464-CDS-P-wetherbeei_contig5100:1385..1451Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5100 1386..1451 +
1683186766.891137-CDS-P-wetherbeei_contig5100:1571..18471683186766.891137-CDS-P-wetherbeei_contig5100:1571..1847Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5100 1572..1847 +
1683186766.9102273-CDS-P-wetherbeei_contig5100:2291..25671683186766.9102273-CDS-P-wetherbeei_contig5100:2291..2567Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5100 2292..2567 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5100.2.1prot_P-wetherbeei_contig5100.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5100 1386..2567 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5100.2.1

>prot_P-wetherbeei_contig5100.2.1 ID=prot_P-wetherbeei_contig5100.2.1|Name=mRNA_P-wetherbeei_contig5100.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=206bp
MEDSRLQSLHDTLRKLQPKGNHGGLGMRGGLVGGHRTLDNGLPKNGLYSF
FVREGHFHRKFDDDNDGGNAADDGEEKPRKDKTADLDKKDKKKKEKKKKK
EEDSKGGKAAQGASTKTKKAKKAKGGEAAASAENRKGKNAGKAATAAGAM
AEVAASAGEAAAEIEASAKKSSKKRRREEGAAPPAAVAAPAAVEAGEREE
KRSKKE
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mRNA from alignment at P-wetherbeei_contig5100:1386..2567+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5100.2.1 ID=mRNA_P-wetherbeei_contig5100.2.1|Name=mRNA_P-wetherbeei_contig5100.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1182bp|location=Sequence derived from alignment at P-wetherbeei_contig5100:1386..2567+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAGACTCAAGGCTACAGTCGCTCCACGACACGCTGCGGAAACTACA
GCCAAAAGGCAACCATGTGAGCGCCGTTTCTTAACCCGTCTCTTGCCGCG
TTCCTGCTGCCCGCTTTTTATCTGGCCTTTTCGGTTGGGCTTACAGGACC
GACTTCGAATCGCATCGTTTTGATCTTTTCCGACAGGGTGGCCTGGGCAT
GCGGGGTGGGCTCGTCGGAGGCCACAGAACGCTCGACAACGGCCTGCCTA
AGAACGGGCTCTACTCGTTCTTCGTCCGCGAGGGCCACTTTCACCGCAAG
TTCGACGACGACAATGACGGCGGAAATGCCGCGGACGACGGCGAGGAAAA
GCCGCGAAAGGACAAGACTGCTGACTTGGACAAAAAGGACAAGAAGAAAA
AGGAGAAGAAGAAGAAGAAGGAGGAGGACTCGAAGGGCGGCAAGGCAGCG
CAAGGCGCCAGCGTTGGCAGCGGTGCTGCAGATGGCGGGAAGGAAAAGAA
GAAGAGAAAGAAGGAGAAGGAAGAGCCGAATGCCGACGACGGCAGCGCAG
TAAACGGCACCACAGCAAATGGCGCTGGCGCAAACGGAGCTGCAACGAAC
GGAACTGCCAAGAAGAAGAAGGAGAAGGAACGGCGGAGCGAGGAGGAGGC
GAAAGCCGTCCCTTCGAAATCCAAAGCGGGCCCCGGGGCGGACGCCGCAG
GTGGTGGCGACGGCAGTCATGACGTCAAGCGGAAAAAAAGGAAGGATAGC
AAGGCGAAGAATGGAGGAGCCGCCACCACCAATGCCGAAGTTGCTGCCGC
CGGAGCCGCCGCCAACGGTGCCGGGCCAAGTGCTGCTGCCAACGGTGCAC
TGGAGGCGCACAGCGCGATTAGCAAGCGGCAACGAGAAGATGCTGTGCGG
GCCGAGACGAAGACCAAAAAAGCGAAAAAGGCGAAGGGCGGGGAGGCGGC
GGCCTCTGCGGAGAATCGCAAAGGGAAGAACGCGGGAAAGGCTGCGACCG
CGGCGGGGGCTATGGCCGAGGTCGCGGCTTCAGCAGGGGAGGCGGCGGCA
GAAATAGAAGCGTCCGCCAAAAAGAGCTCCAAGAAGCGGCGGCGAGAGGA
GGGCGCCGCTCCGCCGGCCGCAGTCGCCGCGCCCGCAGCAGTCGAGGCGG
GCGAGCGCGAGGAGAAGCGGTCCAAGAAGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5100:1386..2567+

>mRNA_P-wetherbeei_contig5100.2.1 ID=mRNA_P-wetherbeei_contig5100.2.1|Name=mRNA_P-wetherbeei_contig5100.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=618bp|location=Sequence derived from alignment at P-wetherbeei_contig5100:1386..2567+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAGACTCAAGGCTACAGTCGCTCCACGACACGCTGCGGAAACTACA
GCCAAAAGGCAACCATGGTGGCCTGGGCATGCGGGGTGGGCTCGTCGGAG
GCCACAGAACGCTCGACAACGGCCTGCCTAAGAACGGGCTCTACTCGTTC
TTCGTCCGCGAGGGCCACTTTCACCGCAAGTTCGACGACGACAATGACGG
CGGAAATGCCGCGGACGACGGCGAGGAAAAGCCGCGAAAGGACAAGACTG
CTGACTTGGACAAAAAGGACAAGAAGAAAAAGGAGAAGAAGAAGAAGAAG
GAGGAGGACTCGAAGGGCGGCAAGGCAGCGCAAGGCGCCAGCACGAAGAC
CAAAAAAGCGAAAAAGGCGAAGGGCGGGGAGGCGGCGGCCTCTGCGGAGA
ATCGCAAAGGGAAGAACGCGGGAAAGGCTGCGACCGCGGCGGGGGCTATG
GCCGAGGTCGCGGCTTCAGCAGGGGAGGCGGCGGCAGAAATAGAAGCGTC
CGCCAAAAAGAGCTCCAAGAAGCGGCGGCGAGAGGAGGGCGCCGCTCCGC
CGGCCGCAGTCGCCGCGCCCGCAGCAGTCGAGGCGGGCGAGCGCGAGGAG
AAGCGGTCCAAGAAGGAG
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