mRNA_P-wetherbeei_contig51.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51.5.1
Unique NamemRNA_P-wetherbeei_contig51.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig51.5.1 vs. uniprot
Match: A0A8J2S5K0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S5K0_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 6.510e-9
Identity = 56/172 (32.56%), Postives = 86/172 (50.00%), Query Frame = 2 
Query: 1370 VRLFRNPFDNVVARFHLLAARKRLV---GI----KYDRTGFLHENG--HFPRRDIHPLLSWHLLASIALRRAGLPTALLTYESIYEDPVKYMRAVLGMLGWS-------EVELPDAEIQRLLGPRIIRRDYARYRGEALPAYVDDWYEPSVVRYMAGVIDKYVMASGCFAEP 1837
            +RL RN FDN+VAR HL    +R     G+     + R G   ++G  HF  RD+   + WH  A+   R +  P   L YE++YED  KY + VL  LG         E  +P   + +    R+  R+ AR +G ALP Y+  +  P++ R +  ++ +Y+ +S  FA P
Sbjct:  221 LRLTRNVFDNLVARHHLECKARRPTCPTGVATRENFVRGGPPVDDGGPHF-LRDVCKYMKWHHRAAAMRRNSTKPWTTLAYETLYEDSPKYFQTVLETLGLEGDGAAGMEKPVPRCTMDQA---RLKTREVARAQGVALPVYLHMFDAPTI-RRIDMLVGRYLDSSDNFAAP 387
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8J2S5K0_9STRA6.510e-932.56Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51contigP-wetherbeei_contig51:9690..12518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2572
Hectar predicted targeting categorysignal peptide
Exons2
Cds size1713
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186766.6085262-UTR-P-wetherbeei_contig51:9689..98701683186766.6085262-UTR-P-wetherbeei_contig51:9689..9870Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig51 9690..9870 +
1683186766.6326127-UTR-P-wetherbeei_contig51:11840..125181683186766.6326127-UTR-P-wetherbeei_contig51:11840..12518Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig51 11841..12518 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186766.6168334-CDS-P-wetherbeei_contig51:9870..113131683186766.6168334-CDS-P-wetherbeei_contig51:9870..11313Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51 9871..11313 +
1683186766.6247585-CDS-P-wetherbeei_contig51:11570..118401683186766.6247585-CDS-P-wetherbeei_contig51:11570..11840Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51 11571..11840 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51.5.1prot_P-wetherbeei_contig51.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51 9871..11840 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51.5.1

>prot_P-wetherbeei_contig51.5.1 ID=prot_P-wetherbeei_contig51.5.1|Name=mRNA_P-wetherbeei_contig51.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=571bp
MAWATYLALWTAVLLSIIATGALEGTKPYSRLSINGNLDQGQHLVALSDD
DDELRLDPSWQSDPTAGCGPSAPCFLYLTPDGELAVFSGVGPSDPAARKL
RTFAAAAEGGAVAVRLIFGIQGDLVLRALPTGEKDRNFRTGDDVSGDAQT
LWRAGSALPDACTPESECGAGAFAALLPDGAVSVHRGLSAAMAAYISVGL
PAVQRLQRCLFHNDFTATTGQGIAAVTAAAAAREPPGACYIPPALGLITF
PNSGTSFTLAASSSITSATTFAVYPRDAPCLTDDCQNICGKNACTDLGMC
QLHAMPGRRRRRRHHHRRLFSVDGGSNRNGTVAAQPAQPAAIAGGRPPPP
PGKGALLKSHVAAYGSAVLCGPAALERFATALRHGESGQPLPHYGFVRLF
RNPFDNVVARFHLLAARKRLVGIKYDRTGFLHENGHFPRRDIHPLLSWHL
LASIALRRAGLPTALLTYESIYEDPVKYMRAVLGMLGWSEVELPDAEIQR
LLGPRIIRRDYARYRGEALPAYVDDWYEPSVVRYMAGVIDKYVMASGCFA
EPVCVRPDVPPVVVLKAPDR*
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mRNA from alignment at P-wetherbeei_contig51:9690..12518+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51.5.1 ID=mRNA_P-wetherbeei_contig51.5.1|Name=mRNA_P-wetherbeei_contig51.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2829bp|location=Sequence derived from alignment at P-wetherbeei_contig51:9690..12518+ (Phaeothamnion wetherbeei SAG_119_79)
TCTAAATTGTCCACCTGAGATGAGGGTGCCTGCGTTTCCTTCTTATCGTC
AATTGGTTACTCTTGAAGCGCCTGTTCCAACTCAAACTCTCTACGTAACT
TTGAATCCTTGGAAAAGTATATATAACCATGAGGTCCAGTGATTAAGACC
ACTTTCATCTTGGCTTGTGCTGCTGCCCGTGATGGCTTGGGCCACGTACC
TCGCGCTGTGGACAGCTGTCTTGCTCTCCATCATCGCAACTGGGGCTCTT
GAGGGCACAAAGCCCTACTCCCGGCTATCCATCAACGGCAATCTCGACCA
GGGGCAGCACCTCGTGGCGTTGAGTGATGACGATGACGAGCTGCGCCTCG
ATCCGTCCTGGCAGTCCGACCCGACCGCGGGATGCGGGCCTTCGGCACCG
TGCTTCCTTTACCTGACTCCGGACGGCGAGCTGGCCGTCTTTTCTGGCGT
CGGTCCCTCCGATCCCGCCGCCCGCAAGCTGCGGACTTTCGCCGCCGCCG
CGGAAGGCGGCGCCGTTGCGGTGCGGCTCATATTTGGCATCCAGGGTGAC
CTCGTCTTGCGAGCCCTTCCCACGGGCGAAAAGGACAGGAACTTTCGCAC
AGGCGACGACGTCAGCGGTGACGCCCAGACGCTGTGGCGTGCCGGCAGCG
CACTGCCCGACGCCTGCACGCCCGAGAGCGAGTGCGGCGCCGGCGCGTTT
GCGGCGCTGCTCCCCGACGGCGCCGTGTCCGTGCATAGGGGTCTCTCGGC
GGCCATGGCCGCCTACATCTCTGTGGGGCTCCCGGCCGTCCAGCGACTGC
AGCGCTGCCTTTTTCACAACGATTTTACGGCGACGACGGGCCAGGGGATT
GCCGCCGTGACGGCTGCGGCGGCGGCACGCGAGCCCCCTGGCGCTTGCTA
CATCCCGCCGGCACTGGGGCTCATTACGTTTCCCAACTCGGGGACGAGCT
TCACGCTGGCGGCGTCCTCCAGCATAACGAGCGCCACAACCTTCGCCGTC
TACCCGCGAGACGCGCCGTGCCTCACCGACGACTGCCAAAACATCTGCGG
AAAGAACGCCTGCACAGACCTCGGCATGTGCCAGCTGCATGCCATGCCCG
GCCGCCGCCGCCGCCGCCGCCACCACCACCGCCGCCTCTTCTCCGTCGAC
GGCGGCAGCAACCGCAATGGAACCGTCGCCGCCCAACCCGCCCAGCCCGC
CGCCATCGCAGGGGGCCGGCCACCGCCGCCGCCGGGTAAGGGAGCGCTGC
TCAAGTCGCACGTCGCAGCGTATGGCTCGGCGGTACTCTGCGGGCCCGCC
GCGCTCGAACGCTTCGCGACGGCGCTCCGCCACGGCGAGAGCGGCCAACC
GCTGCCCCACTACGGCTTTGTGCGGCTCTTCCGAAACCCATTCGACAACG
TCGTGGCCCGCTTCCACCTTTTGGCGGCCCGTAAGCGGTTGGTTGGCATC
AAATACGACCGCACTGGCTTTTTGCATGAGAACGGGCACTTTCCGCGGCG
CGACATCCACCCGCTGCTGTCCTGGCACCTCCTGGCATCCATCGCACTCC
GGCGGGCTGGGCTCCCGACGGCGCTATTGACGTACGAGTCCATTTACGAG
GACCCCGTCAAGTATATGCGGGCGGTGAGCTTTTAGTCGGAAGTTCGTTT
TTTGTTTCTTATACCATGAAGTAATGTGGGGTCTTTTGGTCTTAATAGAG
CTACGAACAGCGAGCGGAAGGCTTTCTGCTGGTGGTTTGAATTAACCCTT
TCTCGCCGAACCCGATGGAATTAAATTATGGAAGGGAGAGAGATGCGCGT
GCCGGAACAGATACAAACCATTTATCGCTTCCATCTGCTCAAGTTAACTC
CATAGTCGCGTTTTTGCGGCCGTTTTTCCAGGTGCTGGGCATGCTGGGCT
GGTCGGAGGTGGAGCTGCCCGACGCGGAGATCCAGCGGCTGCTCGGACCG
CGCATCATCCGCCGCGACTACGCCCGTTACCGCGGCGAGGCGCTGCCGGC
TTATGTCGACGACTGGTACGAACCCAGCGTCGTCCGCTACATGGCCGGCG
TCATCGACAAGTATGTCATGGCGTCTGGCTGCTTCGCGGAGCCGGTGTGC
GTCCGGCCGGACGTGCCGCCTGTGGTTGTGTTGAAGGCGCCCGACCGGTG
AAACGGTCCGGTCCGGCCAGAAGACGAGGCTGGGCCAACAAAAGGCATTG
GGAGATTGCGGCGGTGAGAATTTTGACGAGACGACAGTGACGCTTCCTTC
AGCCTAGCCTTACAGCGGAACAGAAGCTCAGAGGTTTGACCGCCATCAGG
AAAGAGGGGGCAGCGCCCTGCCGAGGCGGGCGACCTGCCGGTGTCGCGGC
GCCCGTGGATCAGCTGCTTCTACCGGCAAAGGCAGCGCACACCCGCCGCG
CGCCATCGAAGGGGAAAACTAGTTGCAGACGCGCCGCAAGACATCACCAC
CGAGCATCAATCTGGGTCTGGTGCCGCCGCGGGCAGTGGCATAGCGCTGC
CGTCGGCTGATGGTGGCGCATCCTCGATTTAATAGTGCGCAACCGCGGTA
GCAAGACCGCTCCGGCAGCAACGGCTGTGGGACCAGCGGCGGCAGCGGCG
GCTGGCTCCGAGATTCTTGTGCAGAACACCAAGCGCGACTGGCTCAACAA
GGTGGCGGTAGGGTTGGCTGCCCATCATTTATTCGCCTGGGCCGGCGGCG
AGCGCGACGGCGTCCGTGCTGCATGTCGTTACAGTCATCGCATTGGCCGG
AGACCTTTTGTCCGATTTCCCACCAGAAATACTTAGTTTGACCAATATAT
TTAATAGACATTAACCTTCTTACCTCGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51:9690..12518+

>mRNA_P-wetherbeei_contig51.5.1 ID=mRNA_P-wetherbeei_contig51.5.1|Name=mRNA_P-wetherbeei_contig51.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1713bp|location=Sequence derived from alignment at P-wetherbeei_contig51:9690..12518+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTTGGGCCACGTACCTCGCGCTGTGGACAGCTGTCTTGCTCTCCAT
CATCGCAACTGGGGCTCTTGAGGGCACAAAGCCCTACTCCCGGCTATCCA
TCAACGGCAATCTCGACCAGGGGCAGCACCTCGTGGCGTTGAGTGATGAC
GATGACGAGCTGCGCCTCGATCCGTCCTGGCAGTCCGACCCGACCGCGGG
ATGCGGGCCTTCGGCACCGTGCTTCCTTTACCTGACTCCGGACGGCGAGC
TGGCCGTCTTTTCTGGCGTCGGTCCCTCCGATCCCGCCGCCCGCAAGCTG
CGGACTTTCGCCGCCGCCGCGGAAGGCGGCGCCGTTGCGGTGCGGCTCAT
ATTTGGCATCCAGGGTGACCTCGTCTTGCGAGCCCTTCCCACGGGCGAAA
AGGACAGGAACTTTCGCACAGGCGACGACGTCAGCGGTGACGCCCAGACG
CTGTGGCGTGCCGGCAGCGCACTGCCCGACGCCTGCACGCCCGAGAGCGA
GTGCGGCGCCGGCGCGTTTGCGGCGCTGCTCCCCGACGGCGCCGTGTCCG
TGCATAGGGGTCTCTCGGCGGCCATGGCCGCCTACATCTCTGTGGGGCTC
CCGGCCGTCCAGCGACTGCAGCGCTGCCTTTTTCACAACGATTTTACGGC
GACGACGGGCCAGGGGATTGCCGCCGTGACGGCTGCGGCGGCGGCACGCG
AGCCCCCTGGCGCTTGCTACATCCCGCCGGCACTGGGGCTCATTACGTTT
CCCAACTCGGGGACGAGCTTCACGCTGGCGGCGTCCTCCAGCATAACGAG
CGCCACAACCTTCGCCGTCTACCCGCGAGACGCGCCGTGCCTCACCGACG
ACTGCCAAAACATCTGCGGAAAGAACGCCTGCACAGACCTCGGCATGTGC
CAGCTGCATGCCATGCCCGGCCGCCGCCGCCGCCGCCGCCACCACCACCG
CCGCCTCTTCTCCGTCGACGGCGGCAGCAACCGCAATGGAACCGTCGCCG
CCCAACCCGCCCAGCCCGCCGCCATCGCAGGGGGCCGGCCACCGCCGCCG
CCGGGTAAGGGAGCGCTGCTCAAGTCGCACGTCGCAGCGTATGGCTCGGC
GGTACTCTGCGGGCCCGCCGCGCTCGAACGCTTCGCGACGGCGCTCCGCC
ACGGCGAGAGCGGCCAACCGCTGCCCCACTACGGCTTTGTGCGGCTCTTC
CGAAACCCATTCGACAACGTCGTGGCCCGCTTCCACCTTTTGGCGGCCCG
TAAGCGGTTGGTTGGCATCAAATACGACCGCACTGGCTTTTTGCATGAGA
ACGGGCACTTTCCGCGGCGCGACATCCACCCGCTGCTGTCCTGGCACCTC
CTGGCATCCATCGCACTCCGGCGGGCTGGGCTCCCGACGGCGCTATTGAC
GTACGAGTCCATTTACGAGGACCCCGTCAAGTATATGCGGGCGGTGCTGG
GCATGCTGGGCTGGTCGGAGGTGGAGCTGCCCGACGCGGAGATCCAGCGG
CTGCTCGGACCGCGCATCATCCGCCGCGACTACGCCCGTTACCGCGGCGA
GGCGCTGCCGGCTTATGTCGACGACTGGTACGAACCCAGCGTCGTCCGCT
ACATGGCCGGCGTCATCGACAAGTATGTCATGGCGTCTGGCTGCTTCGCG
GAGCCGGTGTGCGTCCGGCCGGACGTGCCGCCTGTGGTTGTGTTGAAGGC
GCCCGACCGGTGA
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