mRNA_P-wetherbeei_contig5099.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5099.3.1
Unique NamemRNA_P-wetherbeei_contig5099.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5099.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5099contigP-wetherbeei_contig5099:2439..4002 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1316
Hectar predicted targeting categoryother localisation
Exons2
Cds size1314
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186766.4647217-CDS-P-wetherbeei_contig5099:2438..34381683186766.4647217-CDS-P-wetherbeei_contig5099:2438..3438Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5099 2439..3438 -
1683186766.4728453-CDS-P-wetherbeei_contig5099:3688..40021683186766.4728453-CDS-P-wetherbeei_contig5099:3688..4002Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5099 3689..4002 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5099.3.1prot_P-wetherbeei_contig5099.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5099 2439..4002 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5099.3.1

>prot_P-wetherbeei_contig5099.3.1 ID=prot_P-wetherbeei_contig5099.3.1|Name=mRNA_P-wetherbeei_contig5099.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=438bp
GGTGSSGGGGFAVAAAVDDVSAGAVAAGERGCLLAVLAALELSEPGPGTL
PPLLEGAARDSLRATPATAAGLDGGFVEVDLIYLRELVTARAAVLPVEDP
ARTASDTERAVAWAVRWNAWVAGLAASAHLCNAWQQALAVSVHAAGARLS
RHGWAAVMAAAERVLRRLGDAPCEPYLASPLARSCVAVIGTVRLWEIQAR
AAAAAAVDGGFDAITAGGNSGAGVAEAALGLSGGGVVPPRQAALLLRLLL
AALLRGDGGGAGSGAGEGDGSPEAFRMRLYACGTLLLQRNAAALPLVGRA
QGGVAEALAAAAEQRRQAAAVLEARLDSLMNAVARDVAADAPDWCKAAAM
AFLANAMATAAVPQLADTSWPAGAAAAAAAAAARGGMVPTTAIPLPPPPP
RQDGKLEKRMLEAMAGGLPDCIGSLVEVALDGGGGSAE
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mRNA from alignment at P-wetherbeei_contig5099:2439..4002-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5099.3.1 ID=mRNA_P-wetherbeei_contig5099.3.1|Name=mRNA_P-wetherbeei_contig5099.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1564bp|location=Sequence derived from alignment at P-wetherbeei_contig5099:2439..4002- (Phaeothamnion wetherbeei SAG_119_79)
GGTGGTACCGGCAGCAGCGGCGGCGGCGGTTTTGCGGTGGCGGCGGCGGT
GGACGACGTGTCAGCGGGGGCAGTGGCTGCTGGTGAGCGCGGCTGCCTGC
TGGCGGTGCTGGCGGCGCTGGAGCTGTCGGAGCCCGGGCCGGGCACGCTG
CCGCCGCTGCTGGAGGGCGCGGCGCGGGACTCGTTGCGGGCGACACCAGC
AACGGCGGCGGGTCTCGACGGCGGTTTCGTCGAAGTCGATCTCATTTACC
TGCGGGAGCTGGTGACGGCGCGGGCGGCGGTGCTGCCTGTGGAGGACCCG
GCCAGGACGGCCAGGTTATTGGAGGGGAGACGGCAGACGTAGCGCTTGTT
GTGCTTGTGAACAGGATGGGGCTATTTTCGAGGGTGGTTGGAAGGCATTG
CGACACAGTCGTTACTTCGTTCATCAGGCTGTCCTGTTCTTGCATTCATT
TTGCTGGTGGGGAATGTCTTTGAACACCTTCTTGTGCTGGTAGTTTTTTT
CTTCCTTTTCCATCGTTCTGACGCTCTCCTCCTATTCCCTGTTATCTTCC
CACCAAAACTGCAGCGACACGGAGCGGGCAGTCGCGTGGGCGGTGCGCTG
GAACGCCTGGGTGGCGGGGTTGGCGGCATCGGCGCACCTCTGCAATGCCT
GGCAGCAGGCCCTGGCTGTATCCGTGCACGCCGCTGGCGCCCGCCTCTCC
CGGCACGGGTGGGCGGCGGTAATGGCAGCGGCGGAGCGCGTGCTGCGGCG
GCTCGGCGACGCGCCATGCGAGCCGTATCTGGCGTCGCCGCTCGCGCGCA
GCTGTGTCGCCGTCATTGGCACTGTGCGGCTGTGGGAGATCCAGGCGAGG
GCGGCGGCCGCGGCTGCGGTTGACGGCGGTTTTGACGCCATTACCGCCGG
CGGCAACAGTGGCGCGGGCGTGGCGGAGGCGGCGCTCGGGCTGTCCGGCG
GCGGGGTGGTGCCGCCGCGGCAAGCGGCGCTGCTGCTGCGGCTGCTGCTG
GCGGCGCTGTTGCGCGGCGACGGGGGTGGCGCCGGCTCGGGAGCCGGGGA
GGGCGATGGCAGCCCCGAGGCATTCCGGATGCGGCTGTATGCGTGCGGGA
CACTGCTGCTGCAACGGAACGCCGCAGCGCTGCCGCTCGTCGGCCGCGCG
CAAGGGGGCGTGGCGGAGGCGCTGGCGGCAGCGGCGGAGCAGCGGCGACA
GGCGGCGGCAGTGCTGGAAGCGCGCCTGGACAGCCTCATGAACGCGGTGG
CGCGGGACGTCGCTGCCGACGCGCCCGACTGGTGTAAGGCGGCCGCCATG
GCCTTCCTCGCCAACGCCATGGCGACCGCGGCGGTGCCGCAGCTGGCGGA
CACCAGCTGGCCCGCCGGCGCCGCCGCAGCCGCCGCCGCTGCTGCCGCTC
GAGGAGGGATGGTGCCGACCACAGCAATTCCGCTGCCGCCGCCGCCGCCG
CGGCAGGACGGCAAACTGGAGAAACGAATGCTGGAGGCGATGGCGGGCGG
CTTGCCCGACTGCATCGGCTCGTTGGTGGAGGTTGCGCTTGACGGCGGCG
GCGGCAGCGCCGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5099:2439..4002-

>mRNA_P-wetherbeei_contig5099.3.1 ID=mRNA_P-wetherbeei_contig5099.3.1|Name=mRNA_P-wetherbeei_contig5099.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1314bp|location=Sequence derived from alignment at P-wetherbeei_contig5099:2439..4002- (Phaeothamnion wetherbeei SAG_119_79)
GGTGGTACCGGCAGCAGCGGCGGCGGCGGTTTTGCGGTGGCGGCGGCGGT
GGACGACGTGTCAGCGGGGGCAGTGGCTGCTGGTGAGCGCGGCTGCCTGC
TGGCGGTGCTGGCGGCGCTGGAGCTGTCGGAGCCCGGGCCGGGCACGCTG
CCGCCGCTGCTGGAGGGCGCGGCGCGGGACTCGTTGCGGGCGACACCAGC
AACGGCGGCGGGTCTCGACGGCGGTTTCGTCGAAGTCGATCTCATTTACC
TGCGGGAGCTGGTGACGGCGCGGGCGGCGGTGCTGCCTGTGGAGGACCCG
GCCAGGACGGCCAGCGACACGGAGCGGGCAGTCGCGTGGGCGGTGCGCTG
GAACGCCTGGGTGGCGGGGTTGGCGGCATCGGCGCACCTCTGCAATGCCT
GGCAGCAGGCCCTGGCTGTATCCGTGCACGCCGCTGGCGCCCGCCTCTCC
CGGCACGGGTGGGCGGCGGTAATGGCAGCGGCGGAGCGCGTGCTGCGGCG
GCTCGGCGACGCGCCATGCGAGCCGTATCTGGCGTCGCCGCTCGCGCGCA
GCTGTGTCGCCGTCATTGGCACTGTGCGGCTGTGGGAGATCCAGGCGAGG
GCGGCGGCCGCGGCTGCGGTTGACGGCGGTTTTGACGCCATTACCGCCGG
CGGCAACAGTGGCGCGGGCGTGGCGGAGGCGGCGCTCGGGCTGTCCGGCG
GCGGGGTGGTGCCGCCGCGGCAAGCGGCGCTGCTGCTGCGGCTGCTGCTG
GCGGCGCTGTTGCGCGGCGACGGGGGTGGCGCCGGCTCGGGAGCCGGGGA
GGGCGATGGCAGCCCCGAGGCATTCCGGATGCGGCTGTATGCGTGCGGGA
CACTGCTGCTGCAACGGAACGCCGCAGCGCTGCCGCTCGTCGGCCGCGCG
CAAGGGGGCGTGGCGGAGGCGCTGGCGGCAGCGGCGGAGCAGCGGCGACA
GGCGGCGGCAGTGCTGGAAGCGCGCCTGGACAGCCTCATGAACGCGGTGG
CGCGGGACGTCGCTGCCGACGCGCCCGACTGGTGTAAGGCGGCCGCCATG
GCCTTCCTCGCCAACGCCATGGCGACCGCGGCGGTGCCGCAGCTGGCGGA
CACCAGCTGGCCCGCCGGCGCCGCCGCAGCCGCCGCCGCTGCTGCCGCTC
GAGGAGGGATGGTGCCGACCACAGCAATTCCGCTGCCGCCGCCGCCGCCG
CGGCAGGACGGCAAACTGGAGAAACGAATGCTGGAGGCGATGGCGGGCGG
CTTGCCCGACTGCATCGGCTCGTTGGTGGAGGTTGCGCTTGACGGCGGCG
GCGGCAGCGCCGAG
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