mRNA_P-wetherbeei_contig5099.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5099.2.1
Unique NamemRNA_P-wetherbeei_contig5099.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5099.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5099contigP-wetherbeei_contig5099:885..2417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1535
Hectar predicted targeting categorysignal peptide
Exons1
Cds size1533
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186766.4981158-CDS-P-wetherbeei_contig5099:884..24171683186766.4981158-CDS-P-wetherbeei_contig5099:884..2417Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5099 885..2417 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5099.2.1prot_P-wetherbeei_contig5099.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5099 885..2417 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5099.2.1

>prot_P-wetherbeei_contig5099.2.1 ID=prot_P-wetherbeei_contig5099.2.1|Name=mRNA_P-wetherbeei_contig5099.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=511bp
TGGANLGILPGAVALLTRVACTATGAQFLVDRRLVAGLARAPWLRVAVGH
RPYGGSSGSGSGVRGSSGPRGSRGGGADPAILDAVRDMMWLPVLRLLQAL
LSSLPLHGGLAKQAMEFAAAHGKGFSEPLKLRSPLPSLEGLRLTAAATAV
LAAVAAHPQVWGVGGEKEEGAVAEKSTERIVALLGTFGARPLPQSTSVAS
AAAAAPDYSRNGGGGGIFNGNSYTGNGNGDFGNGGGGGRGMSSWWEDVVP
RTEAEADATAVRRAPPPGVVAGAVGGGDSGAVTVAAASAWSTFDAEKLEV
AQQILCTAATFVRRQASARNGAVLEDGVWAVAEALRACVAAVDAVLERTA
AAGAAANGGSGAGSDNWGSASAAALAATNGNGYLLGSLTFVVENLAAAAY
EIVSVAADGLERARRKAADADAAAAREGFLDAGGGVAYNDDVRSAAEQLA
EVQRLLTPGLRLLAGKSGAEPGAAGRFANVAAKRALDRLAAPPPGLTPSR
PVLLYSGDFSR
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mRNA from alignment at P-wetherbeei_contig5099:885..2417-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5099.2.1 ID=mRNA_P-wetherbeei_contig5099.2.1|Name=mRNA_P-wetherbeei_contig5099.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1533bp|location=Sequence derived from alignment at P-wetherbeei_contig5099:885..2417- (Phaeothamnion wetherbeei SAG_119_79)
ACCGGCGGCGCCAACCTGGGGATCCTTCCGGGGGCCGTGGCGCTGCTGAC
GCGCGTGGCGTGCACGGCCACGGGCGCGCAGTTTCTGGTGGACCGCCGGC
TGGTGGCGGGGCTCGCCAGGGCGCCTTGGCTGCGCGTGGCAGTCGGCCAT
CGGCCGTACGGCGGGAGCAGCGGCAGCGGCAGCGGCGTCCGCGGCAGCAG
CGGTCCCCGCGGTAGCAGGGGTGGCGGCGCGGACCCGGCGATCCTGGACG
CGGTGCGCGACATGATGTGGCTGCCTGTGCTGCGGCTGCTGCAGGCGCTG
CTGTCGTCGCTGCCGCTGCACGGCGGGCTGGCCAAGCAGGCCATGGAGTT
TGCGGCGGCACACGGCAAGGGCTTCTCCGAGCCGCTCAAGCTGCGATCGC
CGCTGCCGTCTCTCGAGGGACTCCGGCTGACGGCGGCGGCGACGGCGGTG
CTAGCAGCGGTAGCGGCCCATCCGCAGGTGTGGGGCGTCGGCGGAGAGAA
GGAGGAAGGCGCCGTAGCGGAGAAGTCCACAGAGCGCATCGTGGCGCTGC
TGGGGACGTTCGGGGCTCGCCCCTTGCCGCAGTCCACTTCTGTGGCGTCG
GCGGCAGCAGCTGCTCCCGATTACAGTCGCAACGGCGGCGGCGGCGGCAT
TTTCAACGGCAACAGCTACACCGGCAATGGCAACGGCGACTTTGGCAACG
GCGGGGGTGGCGGCCGTGGCATGTCCTCGTGGTGGGAGGATGTGGTGCCG
CGGACAGAGGCGGAGGCAGACGCCACGGCGGTCCGGAGGGCCCCGCCGCC
CGGCGTGGTCGCCGGCGCCGTCGGCGGCGGCGACAGCGGCGCCGTAACGG
TTGCTGCGGCGTCGGCGTGGTCGACATTCGACGCCGAGAAGCTGGAAGTG
GCGCAGCAGATCCTCTGCACGGCGGCAACGTTCGTCCGGCGCCAGGCGAG
CGCCCGCAACGGCGCCGTCCTCGAAGACGGCGTGTGGGCGGTGGCCGAGG
CCCTGCGGGCGTGCGTCGCTGCTGTGGACGCGGTGCTGGAGCGGACGGCA
GCCGCTGGTGCTGCGGCCAATGGCGGCAGCGGTGCCGGCAGCGACAACTG
GGGCAGCGCGTCGGCGGCGGCTTTGGCGGCAACAAACGGGAACGGTTACC
TTCTGGGGTCTCTGACCTTTGTGGTAGAGAATCTTGCGGCGGCGGCGTAC
GAGATTGTGTCAGTCGCGGCCGATGGCCTCGAGCGCGCCAGGCGTAAGGC
GGCCGATGCCGACGCTGCTGCCGCTCGGGAGGGTTTCCTCGATGCCGGCG
GCGGCGTTGCCTACAATGACGACGTGCGGAGCGCGGCGGAGCAGCTGGCC
GAGGTGCAGCGCCTGCTGACACCTGGGCTGCGTCTGCTGGCAGGCAAGAG
CGGCGCCGAGCCGGGAGCCGCAGGCAGGTTCGCAAACGTAGCGGCGAAGC
GGGCGCTGGACCGGCTGGCGGCGCCGCCGCCGGGGCTGACGCCGTCTCGG
CCGGTGCTACTGTATTCCGGAGACTTCTCCCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5099:885..2417-

>mRNA_P-wetherbeei_contig5099.2.1 ID=mRNA_P-wetherbeei_contig5099.2.1|Name=mRNA_P-wetherbeei_contig5099.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1533bp|location=Sequence derived from alignment at P-wetherbeei_contig5099:885..2417- (Phaeothamnion wetherbeei SAG_119_79)
ACCGGCGGCGCCAACCTGGGGATCCTTCCGGGGGCCGTGGCGCTGCTGAC
GCGCGTGGCGTGCACGGCCACGGGCGCGCAGTTTCTGGTGGACCGCCGGC
TGGTGGCGGGGCTCGCCAGGGCGCCTTGGCTGCGCGTGGCAGTCGGCCAT
CGGCCGTACGGCGGGAGCAGCGGCAGCGGCAGCGGCGTCCGCGGCAGCAG
CGGTCCCCGCGGTAGCAGGGGTGGCGGCGCGGACCCGGCGATCCTGGACG
CGGTGCGCGACATGATGTGGCTGCCTGTGCTGCGGCTGCTGCAGGCGCTG
CTGTCGTCGCTGCCGCTGCACGGCGGGCTGGCCAAGCAGGCCATGGAGTT
TGCGGCGGCACACGGCAAGGGCTTCTCCGAGCCGCTCAAGCTGCGATCGC
CGCTGCCGTCTCTCGAGGGACTCCGGCTGACGGCGGCGGCGACGGCGGTG
CTAGCAGCGGTAGCGGCCCATCCGCAGGTGTGGGGCGTCGGCGGAGAGAA
GGAGGAAGGCGCCGTAGCGGAGAAGTCCACAGAGCGCATCGTGGCGCTGC
TGGGGACGTTCGGGGCTCGCCCCTTGCCGCAGTCCACTTCTGTGGCGTCG
GCGGCAGCAGCTGCTCCCGATTACAGTCGCAACGGCGGCGGCGGCGGCAT
TTTCAACGGCAACAGCTACACCGGCAATGGCAACGGCGACTTTGGCAACG
GCGGGGGTGGCGGCCGTGGCATGTCCTCGTGGTGGGAGGATGTGGTGCCG
CGGACAGAGGCGGAGGCAGACGCCACGGCGGTCCGGAGGGCCCCGCCGCC
CGGCGTGGTCGCCGGCGCCGTCGGCGGCGGCGACAGCGGCGCCGTAACGG
TTGCTGCGGCGTCGGCGTGGTCGACATTCGACGCCGAGAAGCTGGAAGTG
GCGCAGCAGATCCTCTGCACGGCGGCAACGTTCGTCCGGCGCCAGGCGAG
CGCCCGCAACGGCGCCGTCCTCGAAGACGGCGTGTGGGCGGTGGCCGAGG
CCCTGCGGGCGTGCGTCGCTGCTGTGGACGCGGTGCTGGAGCGGACGGCA
GCCGCTGGTGCTGCGGCCAATGGCGGCAGCGGTGCCGGCAGCGACAACTG
GGGCAGCGCGTCGGCGGCGGCTTTGGCGGCAACAAACGGGAACGGTTACC
TTCTGGGGTCTCTGACCTTTGTGGTAGAGAATCTTGCGGCGGCGGCGTAC
GAGATTGTGTCAGTCGCGGCCGATGGCCTCGAGCGCGCCAGGCGTAAGGC
GGCCGATGCCGACGCTGCTGCCGCTCGGGAGGGTTTCCTCGATGCCGGCG
GCGGCGTTGCCTACAATGACGACGTGCGGAGCGCGGCGGAGCAGCTGGCC
GAGGTGCAGCGCCTGCTGACACCTGGGCTGCGTCTGCTGGCAGGCAAGAG
CGGCGCCGAGCCGGGAGCCGCAGGCAGGTTCGCAAACGTAGCGGCGAAGC
GGGCGCTGGACCGGCTGGCGGCGCCGCCGCCGGGGCTGACGCCGTCTCGG
CCGGTGCTACTGTATTCCGGAGACTTCTCCCGG
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