mRNA_P-wetherbeei_contig5.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5.2.1
Unique NamemRNA_P-wetherbeei_contig5.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5.2.1 vs. uniprot
Match: A0A836CLG1_9STRA (Complex1_LYR_dom domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLG1_9STRA)

HSP 1 Score: 124 bits (312), Expect = 3.890e-34
Identity = 64/134 (47.76%), Postives = 89/134 (66.42%), Query Frame = 1
Query:    7 ILHVYKQLLAMSRRLPSEKEREAALRGVREGFRGNLGVQDQERVGTLLREAESRLGFLKIVTPGRGGRVDGGQTRIVYRGGKALEGAEARRRDRAAHANWSGSNLDPDAVTRHRQTLGRAGFMDHAQVMGPGGF 408
            ++ +Y+ LL  +RRLP   ER  A + VREGF+ ++    QE++  LL +A+SRL +LKIVTP R  R   G  ++VY+ GK +E  +  R  RA  +NW+GSN+DPD+V+RHR TL RAGF DH  V+G  GF
Sbjct:    1 VIRIYRHLLKSARRLPKPAERADAFQQVREGFKAHMHESSQEKLAQLLNQAQSRLSYLKIVTP-RDARNQEGAVKVVYQDGKLVEHVQTDR-PRAPISNWTGSNMDPDSVSRHRHTLSRAGFKDHGHVLGEHGF 132          
BLAST of mRNA_P-wetherbeei_contig5.2.1 vs. uniprot
Match: A0A7S2S2D5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2D5_9STRA)

HSP 1 Score: 115 bits (288), Expect = 2.200e-30
Identity = 61/131 (46.56%), Postives = 87/131 (66.41%), Query Frame = 1
Query:    7 ILHVYKQLLAMSRRLPSEKEREAALRGVREGFRGNLGVQDQERVGTLLREAESRLGFLKIVTPGRGGRVDGGQ-TRIVYRGGKALEGAEARRRDRAAHANWSGSNLDPDAVTRHRQTLGRAGFMDHAQVMG 396
            +L +Y+QLL +S+ +   K+R  A+  VR+ FR +    D+ER+  LL +AESRL FLK+VTP    R+ G Q T  VY+ GK L+   AR +DRA H+NW+GSN+DPD+V +H+  L RAGF D++   G
Sbjct:    9 VLPLYRQLLFLSQHISDVKKRPEAVALVRDAFREHRLETDEERIQQLLAQAESRLSFLKMVTPREYHRLGGQQSTYYVYQNGKRLDDGSARTQDRARHSNWTGSNMDPDSVAKHQHLLNRAGFQDNSHAKG 139          
BLAST of mRNA_P-wetherbeei_contig5.2.1 vs. uniprot
Match: A0A2R5GRX5_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GRX5_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.640e-16
Identity = 55/122 (45.08%), Postives = 74/122 (60.66%), Query Frame = 1
Query:   10 LHVYKQLLAMSRRLPSEKEREAALRGVREGFRGNLGVQDQERVGTLLREAESRLGFLKIVTPGRGGRVDGGQTRIVYRGGKALEGAEARRRDRAAHANWSGSNLDPDAVTRHRQTLGRAGFM 375
            L +YKQLL  +RRLP E +R AA + VR+ F+ +      E+V  LL  A+S+LG+LKIVTP R  R   G+ R+V R GK +EG+ AR  DRA H   S   +D DA+ +H   + R  FM
Sbjct:   14 LALYKQLLQTARRLP-EAQRAAAAQEVRDKFKAHAAEGSPEKVQELLNLAQSKLGYLKIVTP-RTSRDATGKARLVLRDGKWVEGS-ARLMDRAPHDKTS---VDADALAKHNYLMERQHFM 129          
BLAST of mRNA_P-wetherbeei_contig5.2.1 vs. uniprot
Match: A0A8J5X1X5_DIALT (Complex1_LYR_dom domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X1X5_DIALT)

HSP 1 Score: 72.4 bits (176), Expect = 1.160e-13
Identity = 44/122 (36.07%), Postives = 69/122 (56.56%), Query Frame = 1
Query:    7 ILHVYKQLLAMSRRLPSEKEREAALRGVREGFRGNLGVQDQERVGTLLREAESRLGFLKIVTPGRGGRVDGGQTRIVYRGGKALEGAEARRRDRAAHANWSGSNLDPDAVTRHRQTLGRAGF 372
            +L ++++L      LP+E+ R AAL  +R+GFR N+   D   V  L++ A S+L FL++VTP   G +  G    V R G+  +G  A     A H+ +  +N+DPDA+ RHR+ + R  F
Sbjct:    5 VLSLFRRLWRRVGSLPAER-RAAALAELRQGFRANIHASDPVEVAKLVQRASSKLAFLRMVTPTPRGEMGAGTGIYVMRDGQLRQG-RADAVSAARHSAYDATNIDPDALARHRRLVERQHF 124          
BLAST of mRNA_P-wetherbeei_contig5.2.1 vs. uniprot
Match: A0A7S2HLR1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HLR1_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.890e-13
Identity = 46/138 (33.33%), Postives = 81/138 (58.70%), Query Frame = 1
Query:    7 ILHVYKQLLAMSRRLPSEKEREAALRGVREGFRGNLGVQDQERVGTLLREAESRLGFLKIVTPGRGGRVDG----GQTRIVYRG-GKALE---GAEARRRDRAAHANWSGSNLDPDAVTRHRQTLGRAGFMDHAQVMG 396
            +L  Y+ L  + RRLP+ ++  ++L+ +R+ ++ N  V   + +  LL EA  ++ +L+I+TP    R D      +TR VY G G+ ++   G  + ++ +  H+NWSG N+DP +V RH+Q L RAGF+++    G
Sbjct:   13 VLSTYRTLHKLIRRLPTPQQ-PSSLQQLRQTYKANATVPPSQ-IQPLLEEAGKKIAYLRIITPKDKWRGDSKSQSAETRWVYNGKGEKIQDGVGTPSHQKGKV-HSNWSGGNMDPCSVKRHKQQLSRAGFVNNLHAKG 147          
BLAST of mRNA_P-wetherbeei_contig5.2.1 vs. uniprot
Match: A0A2D4BZA9_PYTIN (Complex1_LYR_dom domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZA9_PYTIN)

HSP 1 Score: 71.6 bits (174), Expect = 2.850e-13
Identity = 41/121 (33.88%), Postives = 70/121 (57.85%), Query Frame = 1
Query:   16 VYKQLLAMSRRLPSEKEREAALRGVREGFRGNLGVQDQERVGTLLREAESRLGFLKIVTPGRGGRVDGGQTRIVYRGGKALEGAEARRRDRAAHANWSGSNLDPDAVTRHRQTLGRAGFMD 378
            +YK+LL +++ +P   +RE+ ++ +R  FR +L   D + +  LL+ A+S++GFLKIVTP    R D G+T IVY  G+ ++G           A +  ++ + + + RH Q L R  F+D
Sbjct:   14 IYKKLLRLAKSIPDVAKRESTVQQIRSEFRSHLDSSDPKEISALLQRAQSKIGFLKIVTPRA--RSDSGRTNIVYMKGERVDGDSVSEEG----ARYKTADFESN-LRRHNQLLRRQHFLD 127          
BLAST of mRNA_P-wetherbeei_contig5.2.1 vs. uniprot
Match: A0A6U3XLZ3_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3XLZ3_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 9.040e-13
Identity = 45/132 (34.09%), Postives = 67/132 (50.76%), Query Frame = 1
Query:    7 ILHVYKQLLAMSRRLPSEKEREAALRGVREGFRGNLGVQDQERVGTLLREAESRLGFLKIVTPGRGGRVDGGQTRIVY--RGGKALEGAEARRRDRAAHANWSGSNLDPDAVTRHRQTLGRAGFMDHAQVMG 396
            +L  Y+ L  + R LP  ++  A L  +R  ++ N+       +  L+ EA  ++ +L+IVTP           R +Y   G K   G     RD  A +NW+G NLDP +V RHRQ LGRAGF+++    G
Sbjct:   27 VLSTYRTLHKLIRNLPPTQQPNA-LTQLRTTYKSNVTAPTSS-IQPLIEEAGKKIAYLRIVTPKDRSTNQKSSERWIYDGNGNKVFNGIGQLNRDGKAVSNWNGKNLDPCSVKRHRQQLGRAGFVNNLHAKG 156          
BLAST of mRNA_P-wetherbeei_contig5.2.1 vs. uniprot
Match: A0A8K1CBV4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBV4_PYTOL)

HSP 1 Score: 67.4 bits (163), Expect = 1.210e-11
Identity = 41/121 (33.88%), Postives = 66/121 (54.55%), Query Frame = 1
Query:   16 VYKQLLAMSRRLPSEKEREAALRGVREGFRGNLGVQDQERVGTLLREAESRLGFLKIVTPGRGGRVDGGQTRIVYRGGKALEGAEARRRDRAAHANWSGSNLDPDAVTRHRQTLGRAGFMD 378
            +YK+LL +++ LP   +R+A +  +R  FR +  V D + +  L++ A+S++GFLKIVTP      D G    VY+ G  +EG +A        A +   + D + + RH Q + R  FMD
Sbjct:   13 LYKKLLKLAKSLPDAAKRDATMEQIRAEFRSHRDVTDPKEIAALVQRAQSKIGFLKIVTPRT--TADAGVKSYVYKNGARVEGEKAMEEG----ARYKTEDFDLN-MRRHTQLVRRQHFMD 126          
BLAST of mRNA_P-wetherbeei_contig5.2.1 vs. uniprot
Match: A0A7S2S2D6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2D6_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.580e-11
Identity = 40/91 (43.96%), Postives = 57/91 (62.64%), Query Frame = 1
Query:    7 ILHVYKQLLAMSRRLPSEKEREAALRGVREGFRGNLGVQDQERVGTLLREAESRLGFLKIVTPGRGGRVDGGQ-TRIVYRGGKALEGAEAR 276
            +L +Y+QLL +S+ +   K+R  A+  VR+ FR +    D+ER+  LL +AESRL FLK+VTP    R+ G Q T  VY+ GK L+   AR
Sbjct:    9 VLPLYRQLLFLSQHISDVKKRPEAVALVRDAFREHRLETDEERIQQLLAQAESRLSFLKMVTPREYHRLGGQQSTYYVYQNGKRLDDGSAR 99          
BLAST of mRNA_P-wetherbeei_contig5.2.1 vs. uniprot
Match: A0A485KVP4_9STRA (Aste57867_12466 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KVP4_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 4.710e-8
Identity = 40/121 (33.06%), Postives = 65/121 (53.72%), Query Frame = 1
Query:   19 YKQLLAMSRRLPSEKEREAALRGVREGFRGNLGVQDQERVGTLLREAESRLGFLKIVTPGRGGRVDGGQTRIVYRGGKALEGAEARRRDRAAHANWSGSNLDPDAVT-RHRQTLGRAGFMD 378
            YK+L+ +++ LP +++ E  L  +R  FR N G+   E +  LL +A+S++ +LKIVTP R  +      R VY+ GK  +  +      A+ +N +    D DA+  RH +   R  FMD
Sbjct:    9 YKKLIKLAQSLPGDQKTET-LEKIRHDFRSNGGISSAEELDQLLMKAQSKISYLKIVTPKRTPQTS--PQRYVYKDGKRFDPNDMN----ASSSNATFQTTDVDAMMKRHVKLWRRQHFMD 122          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A836CLG1_9STRA3.890e-3447.76Complex1_LYR_dom domain-containing protein (Fragme... [more]
A0A7S2S2D5_9STRA2.200e-3046.56Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2R5GRX5_9STRA2.640e-1645.08Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A8J5X1X5_DIALT1.160e-1336.07Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A7S2HLR1_9STRA1.890e-1333.33Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A2D4BZA9_PYTIN2.850e-1333.88Complex1_LYR_dom domain-containing protein n=2 Tax... [more]
A0A6U3XLZ3_9STRA9.040e-1334.09Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A8K1CBV4_PYTOL1.210e-1133.88Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2S2D6_9STRA4.580e-1143.96Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A485KVP4_9STRA4.710e-833.06Aste57867_12466 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5contigP-wetherbeei_contig5:3143..3693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog42099.EPrPV00000018180
PFAMsComplex1_LYR
Model size411
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.17e-10
EggNOG OGs2C8G9@1|root,2S386@2759|Eukaryota,1MHHR@121069|Pythiales
DescriptionLYR motif-containing protein. Source PGD
Cds size411
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186751.5797126-CDS-P-wetherbeei_contig5:3142..32761683186751.5797126-CDS-P-wetherbeei_contig5:3142..3276Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5 3143..3276 +
1683186751.5907989-CDS-P-wetherbeei_contig5:3416..36931683186751.5907989-CDS-P-wetherbeei_contig5:3416..3693Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5 3417..3693 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5.2.1prot_P-wetherbeei_contig5.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5 3143..3693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5.2.1

>prot_P-wetherbeei_contig5.2.1 ID=prot_P-wetherbeei_contig5.2.1|Name=mRNA_P-wetherbeei_contig5.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=137bp
KHILHVYKQLLAMSRRLPSEKEREAALRGVREGFRGNLGVQDQERVGTLL
REAESRLGFLKIVTPGRGGRVDGGQTRIVYRGGKALEGAEARRRDRAAHA
NWSGSNLDPDAVTRHRQTLGRAGFMDHAQVMGPGGF*
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mRNA from alignment at P-wetherbeei_contig5:3143..3693+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5.2.1 ID=mRNA_P-wetherbeei_contig5.2.1|Name=mRNA_P-wetherbeei_contig5.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=551bp|location=Sequence derived from alignment at P-wetherbeei_contig5:3143..3693+ (Phaeothamnion wetherbeei SAG_119_79)
AAACATATCTTGCATGTTTACAAACAGCTCCTGGCAATGTCAAGGCGATT GCCAAGCGAAAAGGAGCGGGAAGCGGCCCTCCGCGGCGTACGAGAAGGCT TTCGCGGCAACCTTGGCGTGCAAGATCAAGAACGGTGAGGCTTTCTCGCA CTTTCTCGCCCTTTCTCGCAATTTTCGTGTGGCGAAGACCTTGTCTTCCT GGTCAAGCCTCTTGATGGCAAGGCTTGCTGTTCAGTCGCGTCTGTTTCCG CCCACTTACTCGGTTGCGGTGCAGGGTTGGGACGTTGCTGCGGGAGGCGG AGTCGCGGCTCGGCTTCTTGAAGATAGTAACCCCAGGGAGGGGAGGCCGC GTCGACGGCGGCCAGACGCGCATCGTGTACCGCGGCGGCAAGGCCTTGGA GGGTGCCGAGGCGCGGCGGCGAGACCGCGCCGCCCACGCGAACTGGAGCG GCTCGAACCTTGATCCCGACGCCGTCACCCGGCACCGGCAGACGCTCGGC CGGGCCGGCTTCATGGACCACGCCCAGGTAATGGGCCCCGGCGGCTTTTA G
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5:3143..3693+

>mRNA_P-wetherbeei_contig5.2.1 ID=mRNA_P-wetherbeei_contig5.2.1|Name=mRNA_P-wetherbeei_contig5.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig5:3143..3693+ (Phaeothamnion wetherbeei SAG_119_79)
AAACATATCTTGCATGTTTACAAACAGCTCCTGGCAATGTCAAGGCGATT
GCCAAGCGAAAAGGAGCGGGAAGCGGCCCTCCGCGGCGTACGAGAAGGCT
TTCGCGGCAACCTTGGCGTGCAAGATCAAGAACGGGTTGGGACGTTGCTG
CGGGAGGCGGAGTCGCGGCTCGGCTTCTTGAAGATAGTAACCCCAGGGAG
GGGAGGCCGCGTCGACGGCGGCCAGACGCGCATCGTGTACCGCGGCGGCA
AGGCCTTGGAGGGTGCCGAGGCGCGGCGGCGAGACCGCGCCGCCCACGCG
AACTGGAGCGGCTCGAACCTTGATCCCGACGCCGTCACCCGGCACCGGCA
GACGCTCGGCCGGGCCGGCTTCATGGACCACGCCCAGGTAATGGGCCCCG
GCGGCTTTTAG
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