mRNA_P-wetherbeei_contig5.10.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5.10.1
Unique NamemRNA_P-wetherbeei_contig5.10.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5.10.1 vs. uniprot
Match: A0A7S3XY04_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XY04_HETAK)

HSP 1 Score: 144 bits (364), Expect = 2.800e-42
Identity = 68/118 (57.63%), Postives = 86/118 (72.88%), Query Frame = 1
Query:   10 EVSVHTVAAMPGQTDALLVCARLNMAHLYSLTGQLLRSYSTGKAVGGDLVCARPSPRGKWVYACGEDGILYCFAAETGELDRTLTVTAPDMEVAGLAHHPHRNMLATFGAEGILKLWK 363
            E +VHTV  +PG  D  LV AR + A++ +L GQ+++++S+GKAVGGD   A  SP+GKWVY  GEDG+LYCF   TG+LD+ L V   D EV GLAHHPHRN++ATF  EG LKLWK
Sbjct:   15 ETAVHTVLPLPGAADHFLVAARSSTAYVCTLQGQVVKTFSSGKAVGGDFAAAAVSPQGKWVYCAGEDGVLYCFNVATGQLDQVLKVA--DKEVIGLAHHPHRNLVATFSDEGALKLWK 130          
BLAST of mRNA_P-wetherbeei_contig5.10.1 vs. uniprot
Match: A0A1I8JG04_9PLAT (Uncharacterized protein n=3 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8JG04_9PLAT)

HSP 1 Score: 136 bits (342), Expect = 2.230e-35
Identity = 57/121 (47.11%), Postives = 89/121 (73.55%), Query Frame = 1
Query:    1 AAAEVSVHTVAAMPGQTDALLVCARLNMAHLYSLTGQLLRSYSTGKAVGGDLVCARPSPRGKWVYACGEDGILYCFAAETGELDRTLTVTAPDMEVAGLAHHPHRNMLATFGAEGILKLWK 363
            A AE+ V ++  +P   D L+VC + N   + ++ GQ++RS+S+GK  GGD +CA  SPRG+W+Y CGED  LYCF+ ++G+L+RTL ++  + E+ G+AHHPH+N++AT+  +G+LKLWK
Sbjct:  392 AGAEIPVQSIHILPKTPDHLVVCNKTNSVVIINMQGQVVRSFSSGKREGGDFICATVSPRGEWIYCCGEDKTLYCFSVQSGKLERTLAIS--EREIIGVAHHPHQNLIATYSEDGLLKLWK 510          
BLAST of mRNA_P-wetherbeei_contig5.10.1 vs. uniprot
Match: A0A7S2C2G0_9STRA (WD40 repeat-containing protein SMU1 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C2G0_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.830e-34
Identity = 61/124 (49.19%), Postives = 82/124 (66.13%), Query Frame = 1
Query:    1 AAAEVSVHTVAAMPGQTDALLVCARLNMAHLYSLTGQLLRSYSTGKAVGGDLVCARPSPRGKWVYACGEDGILYCFA---AETGELDRTLTVTAPDMEVAGLAHHPHRNMLATFGAEGILKLWK 363
            A AE S+HT+  MPG  D  L   R + AH+ +L GQ++RS+S+GKA GGD VC   SP+GKW Y  GEDG +Y F    +E  +L+  + V   D ++ G+ HHPHRN+LAT  A+G+LKLWK
Sbjct:   50 ATAETSIHTLVPMPGTPDHFLAVNRTSTAHVVTLQGQVVRSFSSGKATGGDFVCGTVSPQGKWAYCAGEDGKVYVFDLSHSEGAQLEHIVKVA--DKDLIGICHHPHRNLLATHAADGMLKLWK 171          
BLAST of mRNA_P-wetherbeei_contig5.10.1 vs. uniprot
Match: D7FX60_ECTSI (WD40 repeat-containing protein SMU1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX60_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 6.320e-34
Identity = 63/118 (53.39%), Postives = 85/118 (72.03%), Query Frame = 1
Query:   10 EVSVHTVAAMPGQTDALLVCARLNMAHLYSLTGQLLRSYSTGKAVGGDLVCARPSPRGKWVYACGEDGILYCFAAETGELDRTLTVTAPDMEVAGLAHHPHRNMLATFGAEGILKLWK 363
            E SVHTV  +PG  + +LV  R + A L +L GQ++RS+++ K+V  D  CA  SP+G+WVY  GEDG L+CF A T E+++TL V+  + E+ GLAHHPHRN+LATF  EG+LKLWK
Sbjct:  400 EASVHTVRPLPGSAEQVLVSNRTSTAFLCTLQGQVVRSFTSPKSVRADFTCACLSPKGRWVYCAGEDGELFCFDAATTEVEKTLKVS--EKEIIGLAHHPHRNLLATFSNEGLLKLWK 515          
BLAST of mRNA_P-wetherbeei_contig5.10.1 vs. uniprot
Match: A0A835ZIM7_9STRA (WD40 repeat-containing protein SMU1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIM7_9STRA)

HSP 1 Score: 132 bits (332), Expect = 8.360e-34
Identity = 63/123 (51.22%), Postives = 85/123 (69.11%), Query Frame = 1
Query:   10 EVSVHTVAAMPGQTDALLVCARLNMAHLYSLTGQLLRSYS-----TGKAVGGDLVCARPSPRGKWVYACGEDGILYCFAAETGELDRTLTVTAPDMEVAGLAHHPHRNMLATFGAEGILKLWK 363
            E +VHT+  MPG ++ LLV  R   A+L +  G +++S+S     TG   GGD  CA  SPRG+WV+   +DG ++CF AETGE++RTL V A   EV+G+ HHPHRN+LATFG +G+LKLWK
Sbjct:  425 EAAVHTIVPMPGSSEHLLVATRSTTAYLITQQGAVVKSFSLDASGTGAVAGGDFTCACASPRGRWVFVASDDGKVHCFNAETGEIERTLAVGAG--EVSGMTHHPHRNLLATFGKDGMLKLWK 545          
BLAST of mRNA_P-wetherbeei_contig5.10.1 vs. uniprot
Match: A0A7J7JCL8_BUGNE (WD40 repeat-containing protein SMU1 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JCL8_BUGNE)

HSP 1 Score: 130 bits (327), Expect = 2.490e-33
Identity = 59/120 (49.17%), Postives = 85/120 (70.83%), Query Frame = 1
Query:    4 AAEVSVHTVAAMPGQTDALLVCARLNMAHLYSLTGQLLRSYSTGKAVGGDLVCARPSPRGKWVYACGEDGILYCFAAETGELDRTLTVTAPDMEVAGLAHHPHRNMLATFGAEGILKLWK 363
            AA+V VH+V  +P   D  LVC R N   + ++ GQ++RS++ GK  GGD V A  SPRG W Y  GED +LYCF+A+TG+L+RTL+V   +M+V G+ HHPH+N++ T+  +G+L+LWK
Sbjct:  372 AADVPVHSVHLLPRNQDQFLVCNRSNTISIMNMQGQIVRSFTNGKREGGDFVSATISPRGDWYYCLGEDLVLYCFSAKTGKLERTLSVH--EMDVIGICHHPHQNLIGTYSEDGLLRLWK 489          
BLAST of mRNA_P-wetherbeei_contig5.10.1 vs. uniprot
Match: A0A0L8HTP8_OCTBM (WD40 repeat-containing protein SMU1 n=2 Tax=Octopus TaxID=6643 RepID=A0A0L8HTP8_OCTBM)

HSP 1 Score: 130 bits (327), Expect = 3.160e-33
Identity = 57/118 (48.31%), Postives = 85/118 (72.03%), Query Frame = 1
Query:   10 EVSVHTVAAMPGQTDALLVCARLNMAHLYSLTGQLLRSYSTGKAVGGDLVCARPSPRGKWVYACGEDGILYCFAAETGELDRTLTVTAPDMEVAGLAHHPHRNMLATFGAEGILKLWK 363
            +++VH+V  +    +  +VC R N   + +++GQ++RS+S+GK  GGD VC   SPRG+W+Y  GED +LYCF+  TG+L+RTLTV   D  V G+AHHPH+N++AT+  +G+LKLWK
Sbjct:  397 DITVHSVHPLLRNMEQFVVCNRSNTVAIMNMSGQIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDRVLYCFSITTGKLERTLTVHEKD--VIGVAHHPHQNLIATYSEDGLLKLWK 512          
BLAST of mRNA_P-wetherbeei_contig5.10.1 vs. uniprot
Match: UPI001C53D85A (pre-mRNA-splicing factor SLU7-like n=2 Tax=Dipodomys spectabilis TaxID=105255 RepID=UPI001C53D85A)

HSP 1 Score: 128 bits (322), Expect = 5.040e-32
Identity = 57/121 (47.11%), Postives = 84/121 (69.42%), Query Frame = 1
Query:    1 AAAEVSVHTVAAMPGQTDALLVCARLNMAHLYSLTGQLLRSYSTGKAVGGDLVCARPSPRGKWVYACGEDGILYCFAAETGELDRTLTVTAPDMEVAGLAHHPHRNMLATFGAEGILKLWK 363
            A  +++V+ V  +P   +  +VC R N   + ++ GQ++RS+S+GK  GGD VC   SPRG+W+Y  GED +LYCF   TG+L+RTLTV   D  V G+AHHPH+N++ T+ A+G++KLWK
Sbjct:  850 AGTDITVNNVILLPKNPEHFVVCNRSNTVVIMNIQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVLYCFNTVTGKLERTLTVHEKD--VIGIAHHPHQNLIVTYSADGLVKLWK 968          
BLAST of mRNA_P-wetherbeei_contig5.10.1 vs. uniprot
Match: A0A1B0D7E2_PHLPP (WD40 repeat-containing protein SMU1 n=1 Tax=Phlebotomus papatasi TaxID=29031 RepID=A0A1B0D7E2_PHLPP)

HSP 1 Score: 127 bits (318), Expect = 1.750e-31
Identity = 57/118 (48.31%), Postives = 83/118 (70.34%), Query Frame = 1
Query:   10 EVSVHTVAAMPGQTDALLVCARLNMAHLYSLTGQLLRSYSTGKAVGGDLVCARPSPRGKWVYACGEDGILYCFAAETGELDRTLTVTAPDMEVAGLAHHPHRNMLATFGAEGILKLWK 363
            E++VHTV  +P   +  +VC R N   L ++ GQ +RS+S+GK  GG  +CA  SPRG+++Y  GED +LYCF+  +G+L+RTL V   D  + GL HHPH+N+LA++G +G+LKLWK
Sbjct:  864 ELAVHTVLILPKNPEHFIVCNRSNTVVLMNMQGQTVRSFSSGKREGGAFICATISPRGEYIYCAGEDLVLYCFSITSGKLERTLNVHEKD--IIGLTHHPHQNLLASYGEDGVLKLWK 979          
BLAST of mRNA_P-wetherbeei_contig5.10.1 vs. uniprot
Match: A0A7S2WMN1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WMN1_9STRA)

HSP 1 Score: 120 bits (300), Expect = 4.390e-31
Identity = 59/122 (48.36%), Postives = 81/122 (66.39%), Query Frame = 1
Query:    7 AEVSVHTVAAMPGQTDALLVCARLNMAHLYSLTGQLLRSYSTGKAVGGDLVCARPSPRGKWVYACGEDGILYCFAA---ETGELDRTLTVTAPDMEVAGLAHHPHRNMLATFGAEGILKLWK 363
            AE +VH++  +P Q D  L   R + A++ +L GQ++RS+S+GK  GGD VC   SPRGKWVY   EDG  YCF     E  +L++T  VT    EV G+AHHPHRN++ATF  +G+L+LW+
Sbjct:  137 AERAVHSLLPLPAQPDLFLAVPRSSTAYVVNLQGQVVRSFSSGKKEGGDFVCCTMSPRGKWVYCGAEDGNAYCFDLGHDEAVQLEQTFQVTEKK-EVLGMAHHPHRNIVATFAQDGLLRLWR 257          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XY04_HETAK2.800e-4257.63Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1I8JG04_9PLAT2.230e-3547.11Uncharacterized protein n=3 Tax=Macrostomum lignan... [more]
A0A7S2C2G0_9STRA1.830e-3449.19WD40 repeat-containing protein SMU1 n=1 Tax=Floren... [more]
D7FX60_ECTSI6.320e-3453.39WD40 repeat-containing protein SMU1 n=2 Tax=Ectoca... [more]
A0A835ZIM7_9STRA8.360e-3451.22WD40 repeat-containing protein SMU1 n=1 Tax=Tribon... [more]
A0A7J7JCL8_BUGNE2.490e-3349.17WD40 repeat-containing protein SMU1 n=1 Tax=Bugula... [more]
A0A0L8HTP8_OCTBM3.160e-3348.31WD40 repeat-containing protein SMU1 n=2 Tax=Octopu... [more]
UPI001C53D85A5.040e-3247.11pre-mRNA-splicing factor SLU7-like n=2 Tax=Dipodom... [more]
A0A1B0D7E2_PHLPP1.750e-3148.31WD40 repeat-containing protein SMU1 n=1 Tax=Phlebo... [more]
A0A7S2WMN1_9STRA4.390e-3148.36Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5contigP-wetherbeei_contig5:29033..29401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog10224.XP_006819266.1
Preferred nameSMU1
PFAMsWD40
Model size369
Max annot lvl33208|Metazoa
KEGG koko:K13111
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0002119,GO:0002164,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007154,GO:0007267,GO:0007268,GO:0007274,GO:0007275,GO:0007399,GO:0007517,GO:0007528,GO:0007610,GO:0007638,GO:0008150,GO:0008152,GO:0008380,GO:0009605,GO:0009612,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009887,GO:0009987,GO:0010467,GO:0010468,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0022008,GO:0023052,GO:0030154,GO:0030182,GO:0031323,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0040011,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0046983,GO:0048024,GO:0048468,GO:0048513,GO:0048644,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050684,GO:0050789,GO:0050794,GO:0050808,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0061061,GO:0065007,GO:0070013,GO:0071005,GO:0071011,GO:0071704,GO:0071840,GO:0072553,GO:0080090,GO:0090304,GO:0098916,GO:0099172,GO:0099536,GO:0099537,GO:1901360,GO:1903311,GO:1990904
Exons1
Evalue4.53e-35
EggNOG OGsKOG0275@1|root,KOG0275@2759|Eukaryota,38BHC@33154|Opisthokonta,3BCF9@33208|Metazoa,3CWDX@33213|Bilateria
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-10_004400.1
Descriptionregulation of alternative mRNA splicing, via spliceosome
Cds size369
COG categoryS
BRITEko00000,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186751.9049776-CDS-P-wetherbeei_contig5:29032..294011683186751.9049776-CDS-P-wetherbeei_contig5:29032..29401Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5 29033..29401 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5.10.1prot_P-wetherbeei_contig5.10.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5 29033..29401 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5.10.1

>prot_P-wetherbeei_contig5.10.1 ID=prot_P-wetherbeei_contig5.10.1|Name=mRNA_P-wetherbeei_contig5.10.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=123bp
AAAEVSVHTVAAMPGQTDALLVCARLNMAHLYSLTGQLLRSYSTGKAVGG
DLVCARPSPRGKWVYACGEDGILYCFAAETGELDRTLTVTAPDMEVAGLA
HHPHRNMLATFGAEGILKLWKG*
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mRNA from alignment at P-wetherbeei_contig5:29033..29401-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5.10.1 ID=mRNA_P-wetherbeei_contig5.10.1|Name=mRNA_P-wetherbeei_contig5.10.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig5:29033..29401- (Phaeothamnion wetherbeei SAG_119_79)
GCGGCGGCAGAGGTGTCTGTGCACACGGTGGCGGCGATGCCCGGGCAGAC CGACGCCCTGCTCGTCTGCGCACGGCTCAACATGGCGCACCTCTACTCGC TAACAGGGCAGCTGCTGCGGTCCTACTCGACGGGCAAGGCGGTCGGCGGC GACCTGGTCTGCGCGCGGCCGTCGCCGCGTGGCAAGTGGGTCTACGCGTG CGGCGAGGACGGCATCTTGTATTGCTTTGCGGCCGAGACCGGGGAGCTGG ACCGGACGCTGACGGTAACCGCGCCAGACATGGAAGTTGCCGGGTTGGCG CACCACCCGCATCGGAACATGCTCGCGACATTCGGCGCCGAAGGCATCCT GAAGCTCTGGAAGGGTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5:29033..29401-

>mRNA_P-wetherbeei_contig5.10.1 ID=mRNA_P-wetherbeei_contig5.10.1|Name=mRNA_P-wetherbeei_contig5.10.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig5:29033..29401- (Phaeothamnion wetherbeei SAG_119_79)
GCGGCGGCAGAGGTGTCTGTGCACACGGTGGCGGCGATGCCCGGGCAGAC
CGACGCCCTGCTCGTCTGCGCACGGCTCAACATGGCGCACCTCTACTCGC
TAACAGGGCAGCTGCTGCGGTCCTACTCGACGGGCAAGGCGGTCGGCGGC
GACCTGGTCTGCGCGCGGCCGTCGCCGCGTGGCAAGTGGGTCTACGCGTG
CGGCGAGGACGGCATCTTGTATTGCTTTGCGGCCGAGACCGGGGAGCTGG
ACCGGACGCTGACGGTAACCGCGCCAGACATGGAAGTTGCCGGGTTGGCG
CACCACCCGCATCGGAACATGCTCGCGACATTCGGCGCCGAAGGCATCCT
GAAGCTCTGGAAGGGTTGA
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