mRNA_P-wetherbeei_contig21474.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21474.1.1
Unique NamemRNA_P-wetherbeei_contig21474.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21474.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21474contigP-wetherbeei_contig21474:2..1118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1117
Hectar predicted targeting categoryother localisation
Exons1
Cds size660
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186226.6599207-UTR-P-wetherbeei_contig21474:1..481683186226.6599207-UTR-P-wetherbeei_contig21474:1..48Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig21474 2..48 +
1683186226.6752794-UTR-P-wetherbeei_contig21474:708..11181683186226.6752794-UTR-P-wetherbeei_contig21474:708..1118Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig21474 709..1118 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186226.667873-CDS-P-wetherbeei_contig21474:48..7081683186226.667873-CDS-P-wetherbeei_contig21474:48..708Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21474 49..708 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21474.1.1prot_P-wetherbeei_contig21474.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21474 49..708 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21474.1.1

>prot_P-wetherbeei_contig21474.1.1 ID=prot_P-wetherbeei_contig21474.1.1|Name=mRNA_P-wetherbeei_contig21474.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=220bp
MTSFGFECDVSKTMSCEAEEALREYSSLSNVDPAWKPLIIAYHVQKYFPN
DTLGGKNLLFFDSHRSEILNLMGTILADEKSLLVEQVQRSSKMQYAFSVP
DRHKIRALEVRLQALGYKTVIDFETLVPQSKFEEAGANKTELSRELRELL
TLGLERVRKGKTRVVYYKIVINTTTAHLCSLDHRMYSQGWLERSYGAAIG
VFKADESSEESVLQTRIEE*
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mRNA from alignment at P-wetherbeei_contig21474:2..1118+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21474.1.1 ID=mRNA_P-wetherbeei_contig21474.1.1|Name=mRNA_P-wetherbeei_contig21474.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1117bp|location=Sequence derived from alignment at P-wetherbeei_contig21474:2..1118+ (Phaeothamnion wetherbeei SAG_119_79)
CACAGAAAGCAAGGGCCGAGAGCTTCGACATCATCACCCCCGACCTCATG
ACTTCGTTTGGGTTCGAATGCGACGTCAGTAAGACAATGAGCTGCGAGGC
TGAAGAGGCTCTTCGTGAGTACAGCTCCCTGTCAAACGTGGATCCGGCGT
GGAAACCGCTTATCATCGCTTATCACGTCCAAAAATACTTCCCGAACGAC
ACGCTCGGCGGCAAGAACCTGCTCTTCTTCGACAGTCACCGGTCCGAAAT
CCTCAATCTCATGGGGACCATCCTTGCGGACGAGAAGAGCCTTCTTGTGG
AACAGGTGCAGCGATCCTCAAAAATGCAATACGCATTCAGCGTCCCCGAT
CGCCACAAGATCCGAGCGCTCGAGGTCCGTCTGCAAGCTCTCGGCTACAA
AACGGTCATCGACTTCGAGACGCTCGTTCCTCAGAGTAAATTCGAAGAAG
CTGGTGCCAACAAGACAGAACTCAGTCGCGAGCTGCGGGAGCTGCTGACA
CTAGGATTGGAACGGGTTCGAAAAGGCAAGACGAGAGTCGTGTATTATAA
AATTGTCATCAACACGACGACGGCGCACCTCTGCTCTCTGGACCATCGCA
TGTACTCTCAGGGATGGCTGGAACGTTCCTACGGTGCAGCCATCGGAGTC
TTCAAAGCAGACGAGAGTTCAGAGGAATCAGTGCTGCAGACGAGGATCGA
AGAATGACTGGACTTCTGTGCAAGACCCTCGCGCTGCCTCGTACGTGCAG
CACTTGCGGGGGGAAGTCTACGAGGCATTCGGGAAGTCTGAGGCCGATGC
CAAGGCTCGCCGCGAGCGCGTACAGGAGTGCGCTTTCAGCGTGGATGCAG
TCAAAAAGAGACGTGCCGACGAAGCAGGCGACGCACACGACGTTCGACCC
GGCCGGCACACGACTGGGGGAGCCTGGAAGCGACTTCACTTTTCCTGAAA
CAGCAACGCCGCTGGAGAGGTTCATGCCTCATGAAGCGACGCCTGCGGAG
GCCGACCCTCCGCCGAACACTGCTGTGGAACCTGAGCCGAAATTGGCGCT
GGACCTGGCGCCGGGGGAGCCTGAGCCGAACCTGGTGGCGGAATCGGAAC
CGGCGACGGCGGCAGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21474:2..1118+

>mRNA_P-wetherbeei_contig21474.1.1 ID=mRNA_P-wetherbeei_contig21474.1.1|Name=mRNA_P-wetherbeei_contig21474.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=660bp|location=Sequence derived from alignment at P-wetherbeei_contig21474:2..1118+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACTTCGTTTGGGTTCGAATGCGACGTCAGTAAGACAATGAGCTGCGA
GGCTGAAGAGGCTCTTCGTGAGTACAGCTCCCTGTCAAACGTGGATCCGG
CGTGGAAACCGCTTATCATCGCTTATCACGTCCAAAAATACTTCCCGAAC
GACACGCTCGGCGGCAAGAACCTGCTCTTCTTCGACAGTCACCGGTCCGA
AATCCTCAATCTCATGGGGACCATCCTTGCGGACGAGAAGAGCCTTCTTG
TGGAACAGGTGCAGCGATCCTCAAAAATGCAATACGCATTCAGCGTCCCC
GATCGCCACAAGATCCGAGCGCTCGAGGTCCGTCTGCAAGCTCTCGGCTA
CAAAACGGTCATCGACTTCGAGACGCTCGTTCCTCAGAGTAAATTCGAAG
AAGCTGGTGCCAACAAGACAGAACTCAGTCGCGAGCTGCGGGAGCTGCTG
ACACTAGGATTGGAACGGGTTCGAAAAGGCAAGACGAGAGTCGTGTATTA
TAAAATTGTCATCAACACGACGACGGCGCACCTCTGCTCTCTGGACCATC
GCATGTACTCTCAGGGATGGCTGGAACGTTCCTACGGTGCAGCCATCGGA
GTCTTCAAAGCAGACGAGAGTTCAGAGGAATCAGTGCTGCAGACGAGGAT
CGAAGAATGA
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