mRNA_P-wetherbeei_contig21473.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21473.1.1
Unique NamemRNA_P-wetherbeei_contig21473.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig21473.1.1 vs. uniprot
Match: A0A4P5SLF5_9ACTN (SBP_bac_5 domain-containing protein n=3 Tax=Actinobacteria TaxID=201174 RepID=A0A4P5SLF5_9ACTN)

HSP 1 Score: 148 bits (373), Expect = 1.670e-39
Identity = 68/115 (59.13%), Postives = 89/115 (77.39%), Query Frame = 1
Query:   22 MTITYNINPDAVWDDGSPITVADFECTWRANLNTPGTLSTIGWENITSVDEGESDKQAVVRLSKVYAPYRSLFGALIKQDAVDDCDDVTEDFAVDIPFSGRAWKLASWSQTKQIF 366
            MTITY+INP AVW+DGSPIT ADF  TW A+LNTPG++ST G++ +T+VD G SDKQ VV +  VYAP+R LFGALIK  +V +  DV+ D+A +IPFSGR +K+ SWS  + ++
Sbjct:   70 MTITYDINPAAVWEDGSPITAADFAATWEASLNTPGSISTSGYDQVTAVDAGTSDKQVVVTMKAVYAPWRGLFGALIKAASVKNTKDVSADYADNIPFSGRPYKIKSWSPDQVVY 184          
BLAST of mRNA_P-wetherbeei_contig21473.1.1 vs. uniprot
Match: A0A6I3EFK3_9ACTN (SBP_bac_5 domain-containing protein n=5 Tax=root TaxID=1 RepID=A0A6I3EFK3_9ACTN)

HSP 1 Score: 147 bits (372), Expect = 2.220e-39
Identity = 71/120 (59.17%), Postives = 90/120 (75.00%), Query Frame = 1
Query:    7 SNASAMTITYNINPDAVWDDGSPITVADFECTWRANLNTPGTLSTIGWENITSVDEGESDKQAVVRLSKVYAPYRSLFGALIKQDAVDDCDDVTEDFAVDIPFSGRAWKLASWSQTKQIF 366
            +N   MTITY+INP AVWDDGS ITVADF+ TW A+LNTPG++ST G++ +T V+ G SDKQAVV L  VYAP+R LF  LIK  AV +  DV+ DFA +IPFSGR +K+ SWS  + ++
Sbjct:   61 ANVGGMTITYDINPAAVWDDGSQITVADFKATWEASLNTPGSISTSGYDLVTGVEAGSSDKQAVVTLKAVYAPWRGLFSGLIKAAAVKNTMDVSGDFADNIPFSGRPYKIQSWSPDQIVY 180          
BLAST of mRNA_P-wetherbeei_contig21473.1.1 vs. uniprot
Match: A0A4P5R0S9_9ACTN (Peptide ABC transporter substrate-binding protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A4P5R0S9_9ACTN)

HSP 1 Score: 145 bits (367), Expect = 1.190e-38
Identity = 64/118 (54.24%), Postives = 88/118 (74.58%), Query Frame = 1
Query:   13 ASAMTITYNINPDAVWDDGSPITVADFECTWRANLNTPGTLSTIGWENITSVDEGESDKQAVVRLSKVYAPYRSLFGALIKQDAVDDCDDVTEDFAVDIPFSGRAWKLASWSQTKQIF 366
            ++ MT+TY+I P+AVW+DGS ITVADF+ TW A LNTPG++ST+G++ I SV+ G SDKQ VV    VY PY+ LFG LIK  AV++  D++ DFA  + FSGR WK+ SWS ++ ++
Sbjct:   67 SAGMTVTYDIAPEAVWEDGSAITVADFKATWEAALNTPGSISTVGYDQIDSVEAGSSDKQVVVNFKSVYGPYKGLFGGLIKASAVENTSDISADFADFLSFSGRPWKMKSWSPSQVVY 184          
BLAST of mRNA_P-wetherbeei_contig21473.1.1 vs. uniprot
Match: A0A0R2QRF0_9ACTN (SBP_bac_5 domain-containing protein n=5 Tax=root TaxID=1 RepID=A0A0R2QRF0_9ACTN)

HSP 1 Score: 145 bits (366), Expect = 1.600e-38
Identity = 68/122 (55.74%), Postives = 93/122 (76.23%), Query Frame = 1
Query:    1 PQSNASAMTITYNINPDAVWDDGSPITVADFECTWRANLNTPGTLSTIGWENITSVDEGESDKQAVVRLSKVYAPYRSLFGALIKQDAVDDCDDVTEDFAVDIPFSGRAWKLASWSQTKQIF 366
            P +  + MTITY+I P+AVW+DGSPITVADF+ T+ A+LNTPG++ST G++ I++VD G SDKQ VV L  VYAP+R LFG LIK  +V +  DV+ DFA  +PFSGR +K+ SWS+ + ++
Sbjct:   60 PAATGNGMTITYDIAPEAVWEDGSPITVADFQATYDASLNTPGSISTSGYDQISTVDAGTSDKQVVVTLKSVYAPWRGLFGGLIKAASVSNTADVSGDFADILPFSGRPYKMQSWSKDQLVY 181          
BLAST of mRNA_P-wetherbeei_contig21473.1.1 vs. uniprot
Match: A0A3D0HIF4_9ACTN (SBP_bac_5 domain-containing protein (Fragment) n=1 Tax=Acidimicrobium sp. TaxID=1872112 RepID=A0A3D0HIF4_9ACTN)

HSP 1 Score: 144 bits (364), Expect = 2.270e-38
Identity = 67/115 (58.26%), Postives = 88/115 (76.52%), Query Frame = 1
Query:   22 MTITYNINPDAVWDDGSPITVADFECTWRANLNTPGTLSTIGWENITSVDEGESDKQAVVRLSKVYAPYRSLFGALIKQDAVDDCDDVTEDFAVDIPFSGRAWKLASWSQTKQIF 366
            MTITY+INPDAVWDDGSPIT  DF  TW A LNTPG++ST G++ +T+V+ G SDKQ VV LS VYAP+R+L   L+K  +V++  D++ DFA +IPFSGR +K+ SWS  + +F
Sbjct:   70 MTITYDINPDAVWDDGSPITAVDFAATWDAALNTPGSISTPGYDQVTAVEAGASDKQVVVTLSSVYAPWRTLLMRLLKAASVENTKDISADFADNIPFSGRPYKIKSWSPDQIVF 184          
BLAST of mRNA_P-wetherbeei_contig21473.1.1 vs. uniprot
Match: A0A6L6CRI4_9ACTN (SBP_bac_5 domain-containing protein n=5 Tax=root TaxID=1 RepID=A0A6L6CRI4_9ACTN)

HSP 1 Score: 143 bits (360), Expect = 1.100e-37
Identity = 65/122 (53.28%), Postives = 92/122 (75.41%), Query Frame = 1
Query:    1 PQSNASAMTITYNINPDAVWDDGSPITVADFECTWRANLNTPGTLSTIGWENITSVDEGESDKQAVVRLSKVYAPYRSLFGALIKQDAVDDCDDVTEDFAVDIPFSGRAWKLASWSQTKQIF 366
            P++ ++ M ITY+I P+AVW+DG+PITVADF  TW A+LNTPG++ST G++ +T+V+ G SDKQ VV L  VYAPY+ LF  LIK  AV++  D++ DFA  IP+SGR +K+ SWS  + ++
Sbjct:   56 PETASAGMKITYDIAPEAVWEDGTPITVADFAATWDASLNTPGSISTSGYDQVTAVEAGTSDKQVVVTLKSVYAPYKGLFSGLIKAAAVENTADISGDFADMIPYSGRPYKMESWSPDQIVY 177          
BLAST of mRNA_P-wetherbeei_contig21473.1.1 vs. uniprot
Match: A0A0R2PX93_9ACTN (SBP_bac_5 domain-containing protein (Fragment) n=1 Tax=Acidimicrobium sp. BACL17 MAG-120823-bin42 TaxID=1655575 RepID=A0A0R2PX93_9ACTN)

HSP 1 Score: 142 bits (359), Expect = 1.990e-37
Identity = 65/117 (55.56%), Postives = 88/117 (75.21%), Query Frame = 1
Query:   16 SAMTITYNINPDAVWDDGSPITVADFECTWRANLNTPGTLSTIGWENITSVDEGESDKQAVVRLSKVYAPYRSLFGALIKQDAVDDCDDVTEDFAVDIPFSGRAWKLASWSQTKQIF 366
            + MTI+Y I P+AVW+DGS IT  DF+ TW A LNTPG+LST G++ + SV+ G SDKQ VV L  VYAPY+ LF +LIK D+V+D  D+++DF   IPFSGRA+K+ SW++ + +F
Sbjct:   93 TGMTISYEIAPEAVWEDGSHITADDFKATWDATLNTPGSLSTSGYDQVISVEAGRSDKQVVVTLKSVYAPYKILFSSLIKADSVEDTSDISQDFLDLIPFSGRAYKMESWNKERLVF 209          
BLAST of mRNA_P-wetherbeei_contig21473.1.1 vs. uniprot
Match: A0A7K1B1J8_9ACTN (SBP_bac_5 domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A7K1B1J8_9ACTN)

HSP 1 Score: 142 bits (357), Expect = 4.040e-37
Identity = 66/117 (56.41%), Postives = 89/117 (76.07%), Query Frame = 1
Query:   16 SAMTITYNINPDAVWDDGSPITVADFECTWRANLNTPGTLSTIGWENITSVDEGESDKQAVVRLSKVYAPYRSLFGALIKQDAVDDCDDVTEDFAVDIPFSGRAWKLASWSQTKQIF 366
            +AMT+T ++  +AVW+DGSPITVADF+CT  ANLNTPG++ST+G++ I SV+ GESDKQ VV  S VYAP+++LFGALIK  AV+DC D++ DF      SGR + + SWS  + +F
Sbjct:   96 AAMTVTIDLAEEAVWEDGSPITVADFQCTLDANLNTPGSISTVGYDQIISVEAGESDKQVVVNFSTVYAPFKTLFGALIKAAAVEDCSDISTDFQDINETSGRPYIMESWSPEQSVF 212          
BLAST of mRNA_P-wetherbeei_contig21473.1.1 vs. uniprot
Match: A0A7V8X3Q9_9ACTN (SBP_bac_5 domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V8X3Q9_9ACTN)

HSP 1 Score: 139 bits (350), Expect = 2.510e-36
Identity = 64/115 (55.65%), Postives = 81/115 (70.43%), Query Frame = 1
Query:   19 AMTITYNINPDAVWDDGSPITVADFECTWRANLNTPGTLSTIGWENITSVDEGESDKQAVVRLSKVYAPYRSLFGALIKQDAVDDCDDVTEDFAVDIPFSGRAWKLASWSQTKQI 363
            AMT+TY +NPDAVW+DGSPI  ADF+CT  A LNTPG+LST G++ I  V EGE  +  VV    VYAPYR+LF  +IK  AV DC+D++ DF  ++P SGR W L SW+  + I
Sbjct:   45 AMTVTYTLNPDAVWEDGSPIGEADFQCTLDATLNTPGSLSTTGYDQILDVAEGEDPQTVVVTFGTVYAPYRNLFSPIIKAAAVADCNDISADFTEELPISGRPWLLESWTTDQAI 159          
BLAST of mRNA_P-wetherbeei_contig21473.1.1 vs. uniprot
Match: A0A2E0RQ79_9ACTN (SBP_bac_5 domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0RQ79_9ACTN)

HSP 1 Score: 139 bits (351), Expect = 3.120e-36
Identity = 66/119 (55.46%), Postives = 83/119 (69.75%), Query Frame = 1
Query:    7 SNASAMTITYNINPDAVWDDGSPITVADFECTWRANLNTPGTLSTIGWENITSVDEGESDKQAVVRLSKVYAPYRSLFGALIKQDAVDDCDDVTEDFAVDIPFSGRAWKLASWSQTKQI 363
            S  +AMT+T ++NPDAVW+DGSPITVAD ECTW ANLNTP +L+T GW+ I SV  GESD QAVV  S VYAPY+ LF  +++     DC+DV+ DF    P S R +K   WS ++ I
Sbjct:   99 SGDAAMTVTIDLNPDAVWEDGSPITVADLECTWMANLNTPASLNTTGWDQILSVATGESDTQAVVSFSTVYAPYKGLFDRILQASRHADCNDVSLDFEDAPPSSARPYKFQEWSTSQSI 217          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21473.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4P5SLF5_9ACTN1.670e-3959.13SBP_bac_5 domain-containing protein n=3 Tax=Actino... [more]
A0A6I3EFK3_9ACTN2.220e-3959.17SBP_bac_5 domain-containing protein n=5 Tax=root T... [more]
A0A4P5R0S9_9ACTN1.190e-3854.24Peptide ABC transporter substrate-binding protein ... [more]
A0A0R2QRF0_9ACTN1.600e-3855.74SBP_bac_5 domain-containing protein n=5 Tax=root T... [more]
A0A3D0HIF4_9ACTN2.270e-3858.26SBP_bac_5 domain-containing protein (Fragment) n=1... [more]
A0A6L6CRI4_9ACTN1.100e-3753.28SBP_bac_5 domain-containing protein n=5 Tax=root T... [more]
A0A0R2PX93_9ACTN1.990e-3755.56SBP_bac_5 domain-containing protein (Fragment) n=1... [more]
A0A7K1B1J8_9ACTN4.040e-3756.41SBP_bac_5 domain-containing protein n=2 Tax=root T... [more]
A0A7V8X3Q9_9ACTN2.510e-3655.65SBP_bac_5 domain-containing protein n=1 Tax=Acidim... [more]
A0A2E0RQ79_9ACTN3.120e-3655.46SBP_bac_5 domain-containing protein n=1 Tax=Acidim... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21473contigP-wetherbeei_contig21473:800..1165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1177594.MIC448_1050002
Preferred nameoppA
PFAMsSBP_bac_5
Model size366
Max annot lvl201174|Actinobacteria
KEGG koko:K02035
KEGG TC3.A.1.5
KEGG Pathwayko02024,map02024
KEGG ModuleM00239
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0017038,GO:0022857,GO:0030288,GO:0030313,GO:0031224,GO:0031226,GO:0031975,GO:0033036,GO:0033218,GO:0042277,GO:0042597,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043295,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0048037,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0072341,GO:1900750,GO:1901681,GO:1904680
Exons1
Evalue1.46e-15
EggNOG OGsCOG0747@1|root,COG0747@2|Bacteria,2GJ9N@201174|Actinobacteria,4FP1I@85023|Microbacteriaceae
DescriptionBacterial extracellular solute-binding proteins, family 5 Middle
Cds size345
COG categoryE
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186226.628491-UTR-P-wetherbeei_contig21473:799..8201683186226.628491-UTR-P-wetherbeei_contig21473:799..820Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig21473 800..820 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186226.637629-CDS-P-wetherbeei_contig21473:820..11651683186226.637629-CDS-P-wetherbeei_contig21473:820..1165Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21473 821..1165 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21473.1.1prot_P-wetherbeei_contig21473.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21473 821..1165 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21473.1.1

>prot_P-wetherbeei_contig21473.1.1 ID=prot_P-wetherbeei_contig21473.1.1|Name=mRNA_P-wetherbeei_contig21473.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=115bp
MTITYNINPDAVWDDGSPITVADFECTWRANLNTPGTLSTIGWENITSVD
EGESDKQAVVRLSKVYAPYRSLFGALIKQDAVDDCDDVTEDFAVDIPFSG
RAWKLASWSQTKQIF
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mRNA from alignment at P-wetherbeei_contig21473:800..1165+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21473.1.1 ID=mRNA_P-wetherbeei_contig21473.1.1|Name=mRNA_P-wetherbeei_contig21473.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig21473:800..1165+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCAGAGCAACGCCTCGGCGATGACGATCACCTACAACATCAACCCCGA TGCTGTGTGGGACGACGGTTCGCCGATCACCGTTGCCGACTTCGAATGCA CCTGGCGAGCCAACCTGAACACACCCGGAACGCTCAGCACCATCGGCTGG GAGAACATCACGAGCGTCGATGAGGGCGAGTCGGACAAGCAGGCCGTCGT CCGCCTCAGCAAGGTCTACGCGCCGTACCGCAGCTTGTTCGGTGCTCTCA TCAAGCAGGACGCGGTCGACGACTGCGACGACGTGACGGAGGACTTCGCC GTCGACATTCCGTTCTCGGGCCGTGCGTGGAAGCTGGCCTCCTGGAGCCA GACGAAGCAGATCTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21473:800..1165+

>mRNA_P-wetherbeei_contig21473.1.1 ID=mRNA_P-wetherbeei_contig21473.1.1|Name=mRNA_P-wetherbeei_contig21473.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig21473:800..1165+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGATCACCTACAACATCAACCCCGATGCTGTGTGGGACGACGGTTC
GCCGATCACCGTTGCCGACTTCGAATGCACCTGGCGAGCCAACCTGAACA
CACCCGGAACGCTCAGCACCATCGGCTGGGAGAACATCACGAGCGTCGAT
GAGGGCGAGTCGGACAAGCAGGCCGTCGTCCGCCTCAGCAAGGTCTACGC
GCCGTACCGCAGCTTGTTCGGTGCTCTCATCAAGCAGGACGCGGTCGACG
ACTGCGACGACGTGACGGAGGACTTCGCCGTCGACATTCCGTTCTCGGGC
CGTGCGTGGAAGCTGGCCTCCTGGAGCCAGACGAAGCAGATCTTC
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