mRNA_P-wetherbeei_contig21398.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21398.1.1
Unique NamemRNA_P-wetherbeei_contig21398.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig21398.1.1 vs. uniprot
Match: A0A7S2C711_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C711_9STRA)

HSP 1 Score: 177 bits (449), Expect = 3.820e-54
Identity = 81/115 (70.43%), Postives = 99/115 (86.09%), Query Frame = 1
Query:    1 DSMFVFGGYDGTNRLNDLIEFKFSVDMMHCEIPKSTLVPDLREFVNNPLLSDITFVVEGIKVYAHKILCMRCTFFRAMLTGEMKESRAREVVLEDVRHPIFLALLEHLYTDDIEI 345
            DSM+VFGGYDG+NRLND IEF F  D+M CEIP S+LV DL+  VN+ +L+DITFVVEG  +YAHKILCMRCT+F+AMLTGEM+ESRA E+VL DVR+PIFLA+LE+LYTD + +
Sbjct:   15 DSMYVFGGYDGSNRLNDFIEFHFGFDLMSCEIPPSSLVSDLKALVNDQVLNDITFVVEGRPIYAHKILCMRCTYFKAMLTGEMRESRATEIVLPDVRYPIFLAMLEYLYTDQVNV 129          
BLAST of mRNA_P-wetherbeei_contig21398.1.1 vs. uniprot
Match: A0A7S2BYV7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BYV7_9STRA)

HSP 1 Score: 171 bits (434), Expect = 1.590e-51
Identity = 80/115 (69.57%), Postives = 96/115 (83.48%), Query Frame = 1
Query:    1 DSMFVFGGYDGTNRLNDLIEFKFSVDMMHCEIPKSTLVPDLREFVNNPLLSDITFVVEGIKVYAHKILCMRCTFFRAMLTGEMKESRAREVVLEDVRHPIFLALLEHLYTDDIEI 345
            DSM+VFGGYDG+NRLND +EF F ++++ C+IP S+LV DLR  VNN  +SDI F+VE   VYAHKILCMRCT+FRAMLTG M E+RA E+VL+DVRHPIFLALLE+LYTD  EI
Sbjct:   42 DSMYVFGGYDGSNRLNDFVEFHFGLNLLACDIPPSSLVQDLRSLVNNEEMSDIVFMVEDQPVYAHKILCMRCTYFRAMLTGGMSETRASEIVLQDVRHPIFLALLEYLYTDQCEI 156          
BLAST of mRNA_P-wetherbeei_contig21398.1.1 vs. uniprot
Match: A0A835Z0K9_9STRA (BTB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0K9_9STRA)

HSP 1 Score: 169 bits (427), Expect = 6.600e-48
Identity = 81/107 (75.70%), Postives = 93/107 (86.92%), Query Frame = 1
Query:   25 YDGTNRLNDLIEFKFSVDMMHCEIPKSTLVPDLREFVNNPLLSDITFVVEGIKVYAHKILCMRCTFFRAMLTGEMKESRAREVVLEDVRHPIFLALLEHLYTDDIEI 345
            YDGTNRLNDL+EFKF  D+M C+IP STLV DL+  V+N LLSDITF+VEG  VYAHKILCMRCT+FRAMLTG M ESRA+EVVLEDVR PIFLALL++LYTD+ +I
Sbjct:  304 YDGTNRLNDLLEFKFGADLMCCDIPPSTLVEDLKGLVDNELLSDITFMVEGQPVYAHKILCMRCTYFRAMLTGSMVESRAKEVVLEDVRRPIFLALLQYLYTDEADI 410          
BLAST of mRNA_P-wetherbeei_contig21398.1.1 vs. uniprot
Match: A0A7S2XZ71_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ71_9STRA)

HSP 1 Score: 162 bits (409), Expect = 3.330e-46
Identity = 74/107 (69.16%), Postives = 90/107 (84.11%), Query Frame = 1
Query:   25 YDGTNRLNDLIEFKFSVDMMHCEIPKSTLVPDLREFVNNPLLSDITFVVEGIKVYAHKILCMRCTFFRAMLTGEMKESRAREVVLEDVRHPIFLALLEHLYTDDIEI 345
            YDGTNRLNDL+ F+F VD+  C+IP STL+ DL ++VNN  LSD TF+VE   VYAHKILCMRC +F+AM  GEM+ESRARE+V++DVRHPIFLALLE+LYTD+I I
Sbjct:  191 YDGTNRLNDLLLFRFGVDLTWCDIPHSTLITDLSQYVNNDTLSDCTFIVENKPVYAHKILCMRCPYFKAMFMGEMRESRAREIVIQDVRHPIFLALLEYLYTDEITI 297          
BLAST of mRNA_P-wetherbeei_contig21398.1.1 vs. uniprot
Match: D8LIL3_ECTSI (BTB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIL3_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 4.920e-46
Identity = 72/105 (68.57%), Postives = 95/105 (90.48%), Query Frame = 1
Query:   31 GTNRLNDLIEFKFSVDMMHCEIPKSTLVPDLREFVNNPLLSDITFVVEGIKVYAHKILCMRCTFFRAMLTGEMKESRAREVVLEDVRHPIFLALLEHLYTDDIEI 345
            GT+RLNDL+EF+FS+D+M C+IP+STL+ +LR+ VN+ LLSD+TF+VEG  V+AHK+LCMRCT+FRAMLTGEMKESRA+ + L DVR PIFLALLE+LYTD++++
Sbjct:  307 GTSRLNDLVEFRFSIDLMSCDIPESTLIGNLRDMVNSELLSDVTFIVEGKPVHAHKVLCMRCTYFRAMLTGEMKESRAKTITLPDVRRPIFLALLEYLYTDELDV 411          
BLAST of mRNA_P-wetherbeei_contig21398.1.1 vs. uniprot
Match: A0A7S2HLW0_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HLW0_9STRA)

HSP 1 Score: 147 bits (371), Expect = 1.220e-41
Identity = 68/115 (59.13%), Postives = 90/115 (78.26%), Query Frame = 1
Query:    1 DSMFVFGGYDGTNRLNDLIEFKFSVDMMHCEIPKSTLVPDLREFVNNPLLSDITFVVEGIKVYAHKILCMRCTFFRAMLTGEMKESRAREVVLEDVRHPIFLALLEHLYTDDIEI 345
            DSM+VFGGYDG+NRLND I+F F+VD + C+IP STL+ DLR F+ +   SD+TF+VE   V+AHKI+ MRC++FRAM TGEM ES    + LE V+HP+FL++LE+LYTD + I
Sbjct:   74 DSMYVFGGYDGSNRLNDFIKFDFAVDDLTCDIPPSTLLSDLRSFLYDEQFSDVTFIVEDQPVHAHKIMLMRCSYFRAMFTGEMMESNQSTIRLEMVQHPVFLSVLEYLYTDKLTI 188          
BLAST of mRNA_P-wetherbeei_contig21398.1.1 vs. uniprot
Match: A0A7S1XUX3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUX3_9STRA)

HSP 1 Score: 140 bits (353), Expect = 3.440e-39
Identity = 67/114 (58.77%), Postives = 86/114 (75.44%), Query Frame = 1
Query:    4 SMFVFGGYDGTNRLNDLIEFKFSVDMMHCEIPKSTLVPDLREFVNNPLLSDITFVVEGIKVYAHKILCMRCTFFRAMLTGEMKESRAREVVLEDVRHPIFLALLEHLYTDDIEI 345
            +M+VFGGYDG NRLNDL+++ F        IPKSTL  DLR  VNN  LSDITF+VEG  V+AH++LCMRCTFFRAML GEM E+R REV ++ V+   FL L+++LYTD +++
Sbjct:   53 AMYVFGGYDGQNRLNDLVKYTFPTPPRD-GIPKSTLTQDLRNLVNNETLSDITFIVEGEPVHAHRVLCMRCTFFRAMLLGEMLEARQREVHIDQVKRSTFLHLMQYLYTDTVDV 165          
BLAST of mRNA_P-wetherbeei_contig21398.1.1 vs. uniprot
Match: A0A8K1CLD1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CLD1_PYTOL)

HSP 1 Score: 144 bits (363), Expect = 1.210e-38
Identity = 64/104 (61.54%), Postives = 85/104 (81.73%), Query Frame = 1
Query:   34 TNRLNDLIEFKFSVDMMHCEIPKSTLVPDLREFVNNPLLSDITFVVEGIKVYAHKILCMRCTFFRAMLTGEMKESRAREVVLEDVRHPIFLALLEHLYTDDIEI 345
            ++RLND  +F+F  D    +IP+STL+PDLR  VNN ++SDI F+VE + +YAHKILCMRC +F+AMLTGEM ESRARE+V+ D+R PIFLA LE+LY+DDI++
Sbjct:  297 SSRLNDFKQFRFGQDEFELDIPESTLIPDLRMLVNNQIMSDIVFIVEDMPIYAHKILCMRCGYFKAMLTGEMLESRAREIVITDIRRPIFLAFLEYLYSDDIDV 400          
BLAST of mRNA_P-wetherbeei_contig21398.1.1 vs. uniprot
Match: A0A812RV06_9DINO (Lztr1 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812RV06_9DINO)

HSP 1 Score: 143 bits (360), Expect = 3.790e-38
Identity = 64/115 (55.65%), Postives = 92/115 (80.00%), Query Frame = 1
Query:    1 DSMFVFGGYDGTNRLNDLIEFKFSVDMMHCEIPKSTLVPDLREFVNNPLLSDITFVVEGIKVYAHKILCMRCTFFRAMLTGEMKESRAREVVLEDVRHPIFLALLEHLYTDDIEI 345
            +S++VFGGYDG  RLND  +FK + ++ + +IP S+LV DLREF+N+  LSD+TF+VEG  VYAHK+LCMRC++FRAM  G+M+E++ + + + +V H +FLALLE+LYTD+ EI
Sbjct:  298 NSLYVFGGYDGQQRLNDFWQFKLATEV-NIDIPSSSLVADLREFLNDAKLSDVTFIVEGKPVYAHKLLCMRCSYFRAMFEGQMREAQQKTITINNVSHRVFLALLEYLYTDEFEI 411          
BLAST of mRNA_P-wetherbeei_contig21398.1.1 vs. uniprot
Match: H3GM83_PHYRM (BTB domain-containing protein n=19 Tax=Peronosporaceae TaxID=4777 RepID=H3GM83_PHYRM)

HSP 1 Score: 141 bits (355), Expect = 4.640e-38
Identity = 63/106 (59.43%), Postives = 85/106 (80.19%), Query Frame = 1
Query:   28 DGTNRLNDLIEFKFSVDMMHCEIPKSTLVPDLREFVNNPLLSDITFVVEGIKVYAHKILCMRCTFFRAMLTGEMKESRAREVVLEDVRHPIFLALLEHLYTDDIEI 345
            DG++RLND  +F+F  +    +IP+STL+ DLR  VNN ++SD+TFVVEGI VY HKILC+RC +F AMLTGEM ESRARE+ + DVR PIF++L+E+LYTD +++
Sbjct:  286 DGSSRLNDFKQFRFGEEEFQLDIPESTLISDLRILVNNDIMSDVTFVVEGIPVYGHKILCIRCNYFNAMLTGEMLESRAREIQITDVRRPIFISLMEYLYTDYLDV 391          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21398.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2C711_9STRA3.820e-5470.43Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2BYV7_9STRA1.590e-5169.57Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835Z0K9_9STRA6.600e-4875.70BTB domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2XZ71_9STRA3.330e-4669.16Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D8LIL3_ECTSI4.920e-4668.57BTB domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2HLW0_9STRA1.220e-4159.13Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S1XUX3_9STRA3.440e-3958.77Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A8K1CLD1_PYTOL1.210e-3861.54Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A812RV06_9DINO3.790e-3855.65Lztr1 protein n=2 Tax=Symbiodinium TaxID=2949 RepI... [more]
H3GM83_PHYRM4.640e-3859.43BTB domain-containing protein n=19 Tax=Peronospora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21398contigP-wetherbeei_contig21398:94..1087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LIL3
Preferred namelztr1
PFAMsBTB,F-box-like,Jacalin,Kelch_1,Kelch_2,Kelch_3,Kelch_4,PAS_9
Model size345
Max annot lvl2759|Eukaryota
KEGG koko:K12115,ko:K12116,ko:K12117
KEGG Pathwayko04712,map04712
Hectar predicted targeting categoryother localisation
GOsGO:0003008,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0007600,GO:0008150,GO:0015030,GO:0016604,GO:0019233,GO:0031974,GO:0031981,GO:0032501,GO:0042752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0050789,GO:0050877,GO:0065007,GO:0070013
Exons3
Evalue5.31e-47
EggNOG OGs2CMFB@1|root,2QQ74@2759|Eukaryota
DescriptionGalactose oxidase, central domain
Cds size339
COG categoryS
BRITEko00000,ko00001,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186224.0435357-CDS-P-wetherbeei_contig21398:93..1861683186224.0435357-CDS-P-wetherbeei_contig21398:93..186Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21398 94..186 -
1683186224.0628016-CDS-P-wetherbeei_contig21398:512..6471683186224.0628016-CDS-P-wetherbeei_contig21398:512..647Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21398 513..647 -
1683186224.075305-CDS-P-wetherbeei_contig21398:970..10811683186224.075305-CDS-P-wetherbeei_contig21398:970..1081Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21398 971..1081 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186224.0851471-UTR-P-wetherbeei_contig21398:1081..10871683186224.0851471-UTR-P-wetherbeei_contig21398:1081..1087Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig21398 1082..1087 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21398.1.1prot_P-wetherbeei_contig21398.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21398 94..1081 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21398.1.1

>prot_P-wetherbeei_contig21398.1.1 ID=prot_P-wetherbeei_contig21398.1.1|Name=mRNA_P-wetherbeei_contig21398.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=113bp
MFVFGGYDGTNRLNDLIEFKFSVDMMHCEIPKSTLVPDLREFVNNPLLSD
ITFVVEGIKVYAHKILCMRCTFFRAMLTGEMKESRAREVVLEDVRHPIFL
ALLEHLYTDDIEI
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mRNA from alignment at P-wetherbeei_contig21398:94..1087-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21398.1.1 ID=mRNA_P-wetherbeei_contig21398.1.1|Name=mRNA_P-wetherbeei_contig21398.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=994bp|location=Sequence derived from alignment at P-wetherbeei_contig21398:94..1087- (Phaeothamnion wetherbeei SAG_119_79)
GACTCGATGTTTGTGTTTGGGGGTTACGACGGAACGAACCGGCTGAACGA CCTCATCGAGTTCAAGTTCAGTGTCGACATGATGCACTGCGAGATTCCCA AGTCCACCCTTGTGCCGGTGAGTTTCTTTTTCGAGATTCTGCGGCAGCGA AGTTGTCTGTTGGCGGTTCCGGGCATCGCTAGGACCACGGAGAAAGGATG GCGCTGTGTCGGCAGCAGTGAGCAGGGACTGAGCGAGCGAACGTTTCCTG CTGGCCTAGGGCAGCTTTAACTGCAGTCGTCTGCTGCGCTACCGTCCGTT GCCGCTGTCGTCCACCGCCCCCCGCCGTTGCTCTGCCGTCGCTACCGCTG CTGCCCGCTGCACCCGCCCAATGCCATCGCCACGACCGGTCGTCTTGTTT TGTGATCTGTCTGTCGCTGCGACGTTTTGGGATAATGCAGGACCTGCGGG AGTTTGTCAACAACCCACTGCTGTCAGACATAACATTCGTGGTGGAGGGC ATCAAGGTGTACGCCCACAAGATCCTCTGCATGCGCTGCACCTTCTTCCG GGCCATGCTCACTGGAGAGATGAAGGTATATCCCTTCGACCACGTTCCTC TTTGGCATTTCTGAAAAGGTTGCTGTGGGCAGTCCGTTTTGGCAGTGCTG TGAGCGTTGTTTCGAAGGGTGTCGTTTTGCGTTCTGCAGCGGTGGCATTG CTTATGCGCCTGGATCACGCCATGAAATCTCAAGATTGTCTCCTCTGACG TTGTATGCAGTTGTGCTGGTCCGCTCACCGTTGCTTAAAGACGCACTTTT TGATAAGAGTTTCCCTTCGTCGCCTTCCTCCGCTCCCTCTTCTGTGCTTT CTGTCTCGGTGTGATATGGTGTCTGAAACCAAATCATCAATCTTTCATCA GGAGAGCCGGGCACGGGAGGTGGTATTGGAGGACGTGCGGCACCCCATCT TCCTCGCCCTCCTCGAGCACCTCTACACCGACGACATCGAGATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21398:94..1087-

>mRNA_P-wetherbeei_contig21398.1.1 ID=mRNA_P-wetherbeei_contig21398.1.1|Name=mRNA_P-wetherbeei_contig21398.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig21398:94..1087- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTGTGTTTGGGGGTTACGACGGAACGAACCGGCTGAACGACCTCAT
CGAGTTCAAGTTCAGTGTCGACATGATGCACTGCGAGATTCCCAAGTCCA
CCCTTGTGCCGGACCTGCGGGAGTTTGTCAACAACCCACTGCTGTCAGAC
ATAACATTCGTGGTGGAGGGCATCAAGGTGTACGCCCACAAGATCCTCTG
CATGCGCTGCACCTTCTTCCGGGCCATGCTCACTGGAGAGATGAAGGAGA
GCCGGGCACGGGAGGTGGTATTGGAGGACGTGCGGCACCCCATCTTCCTC
GCCCTCCTCGAGCACCTCTACACCGACGACATCGAGATC
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