mRNA_P-wetherbeei_contig21375.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21375.1.1
Unique NamemRNA_P-wetherbeei_contig21375.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig21375.1.1 vs. uniprot
Match: A0A482UJQ7_9ARCH (Flavoprotein domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UJQ7_9ARCH)

HSP 1 Score: 100 bits (248), Expect = 6.560e-25
Identity = 48/87 (55.17%), Postives = 60/87 (68.97%), Query Frame = 1
Query:   76 TCVARAWDFPRGKPMVVCPAMNTAMWQHPFTRRHLDALRDLGVTVVDPVAKMLACGDTGVGALADLPAIVVAVREALHLNVVAPAAS 336
            TCV RAWDF  GKP++V PAMNT MW HPFT +HL  L++LG+ V+ P+AK LACGD G GA+A +  IV AV   L+     P+ S
Sbjct:   24 TCVLRAWDFDGGKPILVAPAMNTHMWTHPFTAKHLAVLQELGMHVIPPIAKRLACGDVGHGAMAPVEDIVEAVVSTLYTRKALPSTS 110          
BLAST of mRNA_P-wetherbeei_contig21375.1.1 vs. uniprot
Match: A0A507E920_9FUNG (Flavoprotein domain-containing protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E920_9FUNG)

HSP 1 Score: 100 bits (249), Expect = 2.980e-24
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 1
Query:   76 TCVARAWDFPRGKPMVVCPAMNTAMWQHPFTRRHLDALRDLGVTVVDPVAKMLACGDTGVGALADLPAIVVAVREAL 306
            TC+ RAWD    KP+++CPAMNT MWQHPFT++HLD   +LG TV++P+ K LACGDTGVGA+A+   I   VRE +
Sbjct:  119 TCILRAWD--TTKPVILCPAMNTFMWQHPFTKKHLDVCVELGYTVIEPIVKTLACGDTGVGAMAEPEFIANVVRETI 193          
BLAST of mRNA_P-wetherbeei_contig21375.1.1 vs. uniprot
Match: A0A835YV88_9STRA (Flavoprotein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV88_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.190e-23
Identity = 50/77 (64.94%), Postives = 55/77 (71.43%), Query Frame = 1
Query:   76 TCVARAWDFPRGKPMVVCPAMNTAMWQHPFTRRHLDALRDLGVTVVDPVAKMLACGDTGVGALADLPAIVVAVREAL 306
            TCVARAWD    KP++V PAMNT MW HP T RHL +L  LGVT + PV K LACGDTG GALAD+  I  AVR AL
Sbjct:  129 TCVARAWDVT--KPLIVAPAMNTHMWSHPLTARHLASLGVLGVTTISPVVKTLACGDTGTGALADVADIAAAVRAAL 203          
BLAST of mRNA_P-wetherbeei_contig21375.1.1 vs. uniprot
Match: A0A061R429_9CHLO (Phosphopantothenoylcysteine decarboxylase n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R429_9CHLO)

HSP 1 Score: 98.2 bits (243), Expect = 2.250e-23
Identity = 50/78 (64.10%), Postives = 55/78 (70.51%), Query Frame = 1
Query:   76 TCVARAWDFPRGKPMVVCPAMNTAMWQHPFTRRHLDALRDLGVTVVDPVAKMLACGDTGVGALADLPAIVVAVREALH 309
            T + RAWDF   KP+VV PAMNT MW +PFTRRHL+ L  LGV VV PV+K LACGD G GALAD   I  A R ALH
Sbjct:  118 TSIIRAWDF--AKPLVVAPAMNTQMWDNPFTRRHLETLESLGVAVVPPVSKALACGDVGQGALADPLEIARACRAALH 193          
BLAST of mRNA_P-wetherbeei_contig21375.1.1 vs. uniprot
Match: A0A2V0NZJ8_9CHLO (Phosphopantothenoylcysteine decarboxylase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NZJ8_9CHLO)

HSP 1 Score: 99.4 bits (246), Expect = 2.340e-23
Identity = 50/78 (64.10%), Postives = 55/78 (70.51%), Query Frame = 1
Query:   76 TCVARAWDFPRGKPMVVCPAMNTAMWQHPFTRRHLDALRDLGVTVVDPVAKMLACGDTGVGALADLPAIVVAVREALH 309
            TCV RAWDF R  P++V PAMNT MW  PFTRRHLDAL  LGV VV PV K LACGD G+GA+A   A+  AV  AL 
Sbjct:  142 TCVVRAWDFDR--PLLVAPAMNTLMWDSPFTRRHLDALAQLGVAVVPPVGKRLACGDVGLGAMAAPEAVAAAVAGALR 217          
BLAST of mRNA_P-wetherbeei_contig21375.1.1 vs. uniprot
Match: A0A383VT09_TETOB (Flavoprotein domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VT09_TETOB)

HSP 1 Score: 95.1 bits (235), Expect = 3.930e-23
Identity = 47/78 (60.26%), Postives = 55/78 (70.51%), Query Frame = 1
Query:   76 TCVARAWDFPRGKPMVVCPAMNTAMWQHPFTRRHLDALRDLGVTVVDPVAKMLACGDTGVGALADLPAIVVAVREALH 309
            TC+ARAWDF R  P++V PAMNT MW  PFT +HL A++ LGVTVVDPV+K LACGD G GA+A    I  A   AL 
Sbjct:   21 TCIARAWDFKR--PLLVAPAMNTFMWDSPFTAQHLAAIQQLGVTVVDPVSKTLACGDVGQGAMASPETIAAACEVALQ 96          
BLAST of mRNA_P-wetherbeei_contig21375.1.1 vs. uniprot
Match: A0A8H7QXM9_9FUNG (Flavoprotein domain-containing protein n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7QXM9_9FUNG)

HSP 1 Score: 97.1 bits (240), Expect = 4.420e-23
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 1
Query:   76 TCVARAWDFPRGKPMVVCPAMNTAMWQHPFTRRHLDALRD-LGVTVVDPVAKMLACGDTGVGALAD 270
            TCV RAWD    KP+VVCPAMNT+MW HP T RH+D LRD LG  +VDP++K LACGDTG+GA+A+
Sbjct:  105 TCVLRAWDIK--KPVVVCPAMNTSMWHHPLTSRHMDVLRDVLGYHIVDPISKKLACGDTGIGAMAE 168          
BLAST of mRNA_P-wetherbeei_contig21375.1.1 vs. uniprot
Match: A0A7R9QYF4_9ACAR (Hypothetical protein n=2 Tax=Oppiella nova TaxID=334625 RepID=A0A7R9QYF4_9ACAR)

HSP 1 Score: 94.0 bits (232), Expect = 7.160e-23
Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = 1
Query:   76 TCVARAWDFPRGKPMVVCPAMNTAMWQHPFTRRHLDALRDLGVTVVDPVAKMLACGDTGVGALADLPAIVVAVREALHL 312
            TCV RAWD    KP++ CPAMN  MW HP T+ HLDAL+  G   V P+ K LACGDTG+GA+A++ AIV  V++ L L
Sbjct:   14 TCVLRAWD--ADKPLLYCPAMNVNMWSHPITQTHLDALQSFGYKQVGPIVKRLACGDTGMGAMAEVSAIVHEVKQVLQL 90          
BLAST of mRNA_P-wetherbeei_contig21375.1.1 vs. uniprot
Match: A0A4P9ZUD6_9FUNG (Flavo protein n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZUD6_9FUNG)

HSP 1 Score: 95.9 bits (237), Expect = 1.870e-22
Identity = 47/88 (53.41%), Postives = 63/88 (71.59%), Query Frame = 1
Query:   76 TCVARAWDFPRGKPMVVCPAMNTAMWQHPFTRRHLDAL-RDLGVTVVDPVAKMLACGDTGVGALADLPAIVVAVREALHLNVVAPAAS 336
            TCV RAWDF   KP +VCPAMNT MW HPFT +HL  L  +LG+ V+ P++K+LACGDTGVGA+A+   I+  V+   ++N + P+ S
Sbjct:  106 TCVLRAWDF--SKPCIVCPAMNTHMWDHPFTAKHLRVLTEELGIKVISPISKLLACGDTGVGAMAEPQDIITRVQS--YMNDLIPSPS 189          
BLAST of mRNA_P-wetherbeei_contig21375.1.1 vs. uniprot
Match: A0A835V9L1_VANPL (Flavoprotein domain-containing protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835V9L1_VANPL)

HSP 1 Score: 95.1 bits (235), Expect = 3.910e-22
Identity = 42/74 (56.76%), Postives = 57/74 (77.03%), Query Frame = 1
Query:   76 TCVARAWDFPRGKPMVVCPAMNTAMWQHPFTRRHLDALRDLGVTVVDPVAKMLACGDTGVGALADLPAIVVAVR 297
            TC+ RAWD+   KP+ V PAMNT MW +PFT++HL+A+R+LG+T++ P+ K LACGD G GA+A+  AI  AVR
Sbjct:  121 TCIIRAWDY--SKPLYVAPAMNTLMWSNPFTKKHLEAIRELGITMIPPITKRLACGDYGNGAMAEPSAIYTAVR 192          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21375.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A482UJQ7_9ARCH6.560e-2555.17Flavoprotein domain-containing protein n=1 Tax=arc... [more]
A0A507E920_9FUNG2.980e-2458.44Flavoprotein domain-containing protein n=1 Tax=Pow... [more]
A0A835YV88_9STRA1.190e-2364.94Flavoprotein n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A061R429_9CHLO2.250e-2364.10Phosphopantothenoylcysteine decarboxylase n=2 Tax=... [more]
A0A2V0NZJ8_9CHLO2.340e-2364.10Phosphopantothenoylcysteine decarboxylase n=1 Tax=... [more]
A0A383VT09_TETOB3.930e-2360.26Flavoprotein domain-containing protein n=1 Tax=Tet... [more]
A0A8H7QXM9_9FUNG4.420e-2366.67Flavoprotein domain-containing protein n=1 Tax=Muc... [more]
A0A7R9QYF4_9ACAR7.160e-2355.70Hypothetical protein n=2 Tax=Oppiella nova TaxID=3... [more]
A0A4P9ZUD6_9FUNG1.870e-2253.41Flavo protein n=1 Tax=Dimargaris cristalligena Tax... [more]
A0A835V9L1_VANPL3.910e-2256.76Flavoprotein domain-containing protein n=1 Tax=Van... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21375contigP-wetherbeei_contig21375:2..337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog44056.XP_009040418.1
Preferred namePPCDC
PFAMsFlavoprotein
Model size336
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00039,RC00219,RC00332,RC00822,RC02725
KEGG koko:K00560,ko:K00652,ko:K01598
KEGG ReactionR02101,R03210,R03269,R10124
KEGG Pathwayko00240,ko00670,ko00770,ko00780,ko01100,ko01523,map00240,map00670,map00770,map00780,map01100,map01523
KEGG ModuleM00053,M00120,M00123,M00573,M00577
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001558,GO:0003674,GO:0003824,GO:0004633,GO:0004799,GO:0004857,GO:0004864,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006220,GO:0006221,GO:0006231,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006873,GO:0006950,GO:0006970,GO:0006972,GO:0007346,GO:0008150,GO:0008152,GO:0008168,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009150,GO:0009152,GO:0009157,GO:0009162,GO:0009165,GO:0009176,GO:0009177,GO:0009219,GO:0009221,GO:0009259,GO:0009260,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009628,GO:0009651,GO:0009892,GO:0009966,GO:0009987,GO:0010181,GO:0010563,GO:0010605,GO:0010646,GO:0010921,GO:0010923,GO:0015936,GO:0015937,GO:0016043,GO:0016740,GO:0016741,GO:0016829,GO:0016830,GO:0016831,GO:0017076,GO:0018130,GO:0019208,GO:0019212,GO:0019220,GO:0019222,GO:0019438,GO:0019637,GO:0019692,GO:0019693,GO:0019725,GO:0019888,GO:0022607,GO:0023051,GO:0030003,GO:0030004,GO:0030234,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0032259,GO:0032268,GO:0032269,GO:0032515,GO:0032553,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035303,GO:0035304,GO:0035305,GO:0035308,GO:0036094,GO:0040008,GO:0042083,GO:0042538,GO:0042592,GO:0042802,GO:0043086,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043666,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045936,GO:0046073,GO:0046385,GO:0046390,GO:0046483,GO:0048037,GO:0048519,GO:0048523,GO:0048583,GO:0048878,GO:0050662,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051174,GO:0051186,GO:0051188,GO:0051246,GO:0051248,GO:0051259,GO:0051260,GO:0051336,GO:0051346,GO:0051726,GO:0055067,GO:0055080,GO:0055082,GO:0055086,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070206,GO:0070207,GO:0071513,GO:0071704,GO:0071840,GO:0072521,GO:0072522,GO:0072527,GO:0072528,GO:0080090,GO:0090407,GO:0097159,GO:0097367,GO:0098771,GO:0098772,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990143
Exons1
Evalue2.21e-22
EggNOG OGsCOG0452@1|root,KOG0672@2759|Eukaryota
EC2.1.1.45,2.3.1.47,4.1.1.36
Descriptionphosphopantothenoylcysteine decarboxylase activity
Cds size318
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186223.7340577-UTR-P-wetherbeei_contig21375:1..191683186223.7340577-UTR-P-wetherbeei_contig21375:1..19Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig21375 2..19 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186223.7564213-CDS-P-wetherbeei_contig21375:19..3371683186223.7564213-CDS-P-wetherbeei_contig21375:19..337Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21375 20..337 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21375.1.1prot_P-wetherbeei_contig21375.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21375 20..337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21375.1.1

>prot_P-wetherbeei_contig21375.1.1 ID=prot_P-wetherbeei_contig21375.1.1|Name=mRNA_P-wetherbeei_contig21375.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=106bp
MRKQHLTAMVLPSAISCHQTCVARAWDFPRGKPMVVCPAMNTAMWQHPFT
RRHLDALRDLGVTVVDPVAKMLACGDTGVGALADLPAIVVAVREALHLNV
VAPAAS
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mRNA from alignment at P-wetherbeei_contig21375:2..337+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21375.1.1 ID=mRNA_P-wetherbeei_contig21375.1.1|Name=mRNA_P-wetherbeei_contig21375.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig21375:2..337+ (Phaeothamnion wetherbeei SAG_119_79)
GAGAACCATAGCTTTCCAATGCGCAAGCAACACTTGACTGCCATGGTTTT ACCATCTGCCATTTCTTGTCATCAGACGTGCGTGGCGCGCGCCTGGGACT TTCCGCGCGGCAAGCCCATGGTCGTCTGCCCGGCGATGAACACCGCAATG TGGCAGCACCCCTTCACAAGGCGCCATTTGGACGCGTTAAGGGACCTCGG CGTGACCGTCGTGGATCCGGTGGCTAAGATGCTCGCCTGCGGCGACACGG GCGTCGGAGCGCTAGCCGACCTGCCGGCCATCGTGGTGGCGGTTCGTGAG GCGCTTCACCTCAATGTGGTCGCGCCGGCGGCGTCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21375:2..337+

>mRNA_P-wetherbeei_contig21375.1.1 ID=mRNA_P-wetherbeei_contig21375.1.1|Name=mRNA_P-wetherbeei_contig21375.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig21375:2..337+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCAAGCAACACTTGACTGCCATGGTTTTACCATCTGCCATTTCTTG
TCATCAGACGTGCGTGGCGCGCGCCTGGGACTTTCCGCGCGGCAAGCCCA
TGGTCGTCTGCCCGGCGATGAACACCGCAATGTGGCAGCACCCCTTCACA
AGGCGCCATTTGGACGCGTTAAGGGACCTCGGCGTGACCGTCGTGGATCC
GGTGGCTAAGATGCTCGCCTGCGGCGACACGGGCGTCGGAGCGCTAGCCG
ACCTGCCGGCCATCGTGGTGGCGGTTCGTGAGGCGCTTCACCTCAATGTG
GTCGCGCCGGCGGCGTCA
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