mRNA_P-wetherbeei_contig21374.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21374.1.1
Unique NamemRNA_P-wetherbeei_contig21374.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig21374.1.1 vs. uniprot
Match: A0A3C0NFZ0_9CYAN (Uncharacterized protein n=2 Tax=unclassified Cyanobacteria TaxID=1983111 RepID=A0A3C0NFZ0_9CYAN)

HSP 1 Score: 148 bits (373), Expect = 3.800e-38
Identity = 73/159 (45.91%), Postives = 100/159 (62.89%), Query Frame = 1
Query:    1 QGDITAAFGNLTRITAAALGVDRASIWMFDPEHDTLSCTDLFCASMNEHSAGQSIKVVEHPAYFSSLLNEEYIAADDAMNDGRLKAFKESYLKPLGIGSVLDVPILHGGRVQGVLCLEHIGAPITWTAEQRLFGTAIANFASLALERQERAKAEEDLRE 477
            QGD+ AA   +T  TA  + V+R S+W+FD     L C +LF  S+N HS G  +   ++P+YF +L+ E+ + AD+A  D +   F ESYL PLGI S+LD PI   G+  GV+CLEH+G    WT E + F  ++AN  SLALE QER +AE+ LRE
Sbjct:  194 QGDLNAAIETITEATAHNIAVERVSVWLFDKTGTLLKCLNLFERSLNRHSQGVELVTADYPSYFQALIQEQLLVADEAHTDPKTSEFSESYLTPLGISSMLDAPIRLKGQTVGVVCLEHVGDSRYWTPEDQNFARSVANLVSLALEAQERKRAEDALRE 352          
BLAST of mRNA_P-wetherbeei_contig21374.1.1 vs. uniprot
Match: A0A533YGU2_9BACT (Response regulator n=1 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A533YGU2_9BACT)

HSP 1 Score: 145 bits (365), Expect = 2.990e-37
Identity = 72/157 (45.86%), Postives = 98/157 (62.42%), Query Frame = 1
Query:    7 DITAAFGNLTRITAAALGVDRASIWMFDPEHDTLSCTDLFCASMNEHSAGQSIKVVEHPAYFSSLLNEEYIAADDAMNDGRLKAFKESYLKPLGIGSVLDVPILHGGRVQGVLCLEHIGAPITWTAEQRLFGTAIANFASLALERQERAKAEEDLRE 477
            D+ AA G +T + A  L  +R SIW +   H  +SC +L+  S + HS+G  +KV ++PAYF +L   E IAADDA  D R   F + YL+PLGI S++DVPI   G + GVLC EHIGA   W  ++++F  A AN  SL + + ER +AEE LRE
Sbjct:   26 DLAAALGRMTEVVARTLKTERVSIWRYSDAHSAISCVELYELSAHRHSSGMELKVQDYPAYFKALAASEVIAADDAHQDARTCEFSKRYLRPLGITSMMDVPIYVAGMLDGVLCHEHIGAGRQWRPDEQMFAVAAANLISLVMGQWERRRAEEALRE 182          
BLAST of mRNA_P-wetherbeei_contig21374.1.1 vs. uniprot
Match: A0A351L8W8_9CYAN (Urea ABC transporter substrate-binding protein n=1 Tax=Cyanobacteria bacterium UBA11371 TaxID=2055770 RepID=A0A351L8W8_9CYAN)

HSP 1 Score: 145 bits (366), Expect = 3.260e-37
Identity = 74/159 (46.54%), Postives = 99/159 (62.26%), Query Frame = 1
Query:    1 QGDITAAFGNLTRITAAALGVDRASIWMFDPEHDTLSCTDLFCASMNEHSAGQSIKVVEHPAYFSSLLNEEYIAADDAMNDGRLKAFKESYLKPLGIGSVLDVPILHGGRVQGVLCLEHIGAPITWTAEQRLFGTAIANFASLALERQERAKAEEDLRE 477
            QGD+ AA   +T  +A  +GV+RAS+W+ D     + C DLF  S N+HS G  I   ++PAYF +L  +E IAA++A  D R   F  SYL PLGI S+LD+PI   G+  GV+CLEHIG P  WTAE + F  ++A+  SLA E  ER + E  LR+
Sbjct:  436 QGDLKAALKEITEASAVNIGVERASVWLLDETKAKIKCLDLFEKSSNQHSEGAEIAAADYPAYFQALQQDEAIAAENASTDPRTVEFAPSYLIPLGIASMLDIPIRLRGQTAGVICLEHIGVPRHWTAEDQNFARSLADLVSLAFEATERKQTEAALRQ 594          
BLAST of mRNA_P-wetherbeei_contig21374.1.1 vs. uniprot
Match: D8PBG3_9BACT (Putative Hybrid histidine kinase n=3 Tax=Nitrospira TaxID=1234 RepID=D8PBG3_9BACT)

HSP 1 Score: 145 bits (366), Expect = 3.470e-37
Identity = 76/158 (48.10%), Postives = 100/158 (63.29%), Query Frame = 1
Query:    1 QGDITAAFGNLTRITAAALGVDRASIWMFDPEHDTLSCTDLFCASMNEHSAGQSIKVVEHPAYFSSLLNEEYIAADDAMNDGRLKAFKESYLKPLGIGSVLDVPILHGGRVQGVLCLEHIGAPITWTAEQRLFGTAIANFASLALERQERAKAEEDLR 474
             G +  A   +TR TA  LGV R SIW+   +HD++ C DL+ +S + HS+G  I+    P YF +LL+E  I A DA +D R + F  SYL+PLGIG++LD+PI   G++ GVLC EHIG P  W  E++ FG AIA+  SLALE  ER  AE  LR
Sbjct:  229 SGVLEPALQEITRATAITLGVSRTSIWLLSEDHDSIRCKDLYESSKHSHSSGIDIQSAHFPEYFRALLSERVIDAADAKSDPRTREFTASYLEPLGIGAMLDIPIRFKGKLVGVLCNEHIGPPRPWMLEEQQFGHAIASLVSLALEAVERLHAEGALR 386          
BLAST of mRNA_P-wetherbeei_contig21374.1.1 vs. uniprot
Match: UPI00155676AF (GAF domain-containing protein n=1 Tax=Microcoleus asticus TaxID=2815231 RepID=UPI00155676AF)

HSP 1 Score: 144 bits (363), Expect = 8.770e-37
Identity = 65/158 (41.14%), Postives = 103/158 (65.19%), Query Frame = 1
Query:    1 QGDITAAFGNLTRITAAALGVDRASIWMFDPEHDTLSCTDLFCASMNEHSAGQSIKVVEHPAYFSSLLNEEYIAADDAMNDGRLKAFKESYLKPLGIGSVLDVPILHGGRVQGVLCLEHIGAPITWTAEQRLFGTAIANFASLALERQERAKAEEDLR 474
            +G+++ A   +T++    L V+R S+W +      + C DL+  + N+HS G  +KV ++P+YF +L  E+ IAA DA  D R + F+ESYL PL I S+LD+PI H GR+ GV+CLEH+G P  WT +++ F + +A   +LA+E ++R +AE +LR
Sbjct:  213 EGNLSEALREMTQMATRTLNVERGSVWFYKENKSAMCCADLYELTANQHSGGAELKVADYPSYFQALKTEQAIAAVDAKTDPRTQEFRESYLIPLNISSMLDIPITHQGRIAGVICLEHLGTPRKWTLDEQSFASYLAQMTALAMEARDRKQAELNLR 370          
BLAST of mRNA_P-wetherbeei_contig21374.1.1 vs. uniprot
Match: A0A1L6I3P2_9BURK (Histidine kinase n=2 Tax=Paraburkholderia TaxID=1822464 RepID=A0A1L6I3P2_9BURK)

HSP 1 Score: 143 bits (361), Expect = 1.440e-36
Identity = 71/154 (46.10%), Postives = 97/154 (62.99%), Query Frame = 1
Query:   31 LTRITAAALGVDRASIWMFDPEHDTLSCTDLFCASMNEHSAGQSIKVVEHPAYFSSLLNEEYIAADDAMNDGRLKAFKESYLKPLGIGSVLDVPILHGGRVQGVLCLEHIGAPITWTAEQRLFGTAIANFASLALERQERAKAEEDLREANRSV 492
            +T   A  + V RAS+W +D     + C DL+  S N HS G  ++   +PAYF++L + E I ADDA  D R   F  SYL PLG+ ++LD+PI   G V GVLCLE IG P+ WT E RLFG A+AN  +LA+ER ER +AE+ LR++ + +
Sbjct:   49 ITETAARLMSVARASLWRYDSARTAIHCLDLYECSTNRHSDGAQLRAQSYPAYFAALASSEAIVADDAHRDPRTCEFGTSYLTPLGVTAMLDIPIRVQGNVDGVLCLEQIGPPLAWTTEDRLFGIALANLIALAVERHERERAEKALRQSEQRM 202          
BLAST of mRNA_P-wetherbeei_contig21374.1.1 vs. uniprot
Match: UPI0016880C46 (PAS domain S-box protein n=1 Tax=Microcoleus sp. FACHB-68 TaxID=2692826 RepID=UPI0016880C46)

HSP 1 Score: 143 bits (361), Expect = 1.700e-36
Identity = 70/155 (45.16%), Postives = 98/155 (63.23%), Query Frame = 1
Query:    4 GDITAAFGNLTRITAAALGVDRASIWMFDPEHDTLSCTDLFCASMNEHSAGQSIKVVEHPAYFSSLLNEEYIAADDAMNDGRLKAFKESYLKPLGIGSVLDVPILHGGRVQGVLCLEHIGAPITWTAEQRLFGTAIANFASLALERQERAKAEED 468
            GD+ AA   +T+I A  L ++R S+W ++ +H  ++C DL+  + N+HS+G  +   + P YF ++  +  IAADDA  D R + F E YLKPLGI S+LDVPI  GGR  GVLC EHIG    W  E++ F   +A  ASLA+E  ER +AEE+
Sbjct:  870 GDLEAALQEITQIAAQTLELERVSVWFYNDDHSKINCADLYELTQNQHSSGLELAATDFPNYFQAIKADRTIAADDAHTDPRTQEFSECYLKPLGIASMLDVPIRMGGRTVGVLCHEHIGTARRWALEEQNFANYLAYMASLAMEAGERKRAEEE 1024          
BLAST of mRNA_P-wetherbeei_contig21374.1.1 vs. uniprot
Match: K9VLE6_9CYAN (Adenylate/guanylate cyclase with GAF and PAS/PAC sensors n=1 Tax=Oscillatoria nigro-viridis PCC 7112 TaxID=179408 RepID=K9VLE6_9CYAN)

HSP 1 Score: 143 bits (360), Expect = 2.170e-36
Identity = 69/160 (43.12%), Postives = 100/160 (62.50%), Query Frame = 1
Query:    1 QGDITAAFGNLTRITAAALGVDRASIWMFDPEHDTLSCTDLFCASMNEHSAGQSIKVVEHPAYFSSLLNEEYIAADDAMNDGRLKAFKESYLKPLGIGSVLDVPILHGGRVQGVLCLEHIGAPITWTAEQRLFGTAIANFASLALERQERAKAEEDLREA 480
            QGD+T A   +T   +  L V R+S+W++D     + C DLF  ++N+HS G  +   ++P YF +L  E  IAA DA  D R + F ESYL P GI S+LD PI  GG   GV+CLEH+G P +WT E++ F  ++A+  + A+E ++R +AEE LR+A
Sbjct:  493 QGDLTKALQEITETASRTLEVARSSVWLYDRTKSKIECLDLFDRTLNQHSHGLELAAADYPVYFQALREERAIAAFDAQKDFRTREFAESYLIPFGITSMLDTPIQIGGETAGVICLEHVGTPRSWTIEEQSFAVSLADSVTFAVEARQRQRAEEALRQA 652          
BLAST of mRNA_P-wetherbeei_contig21374.1.1 vs. uniprot
Match: A0A2T1FCT6_9CYAN (Histidine kinase n=2 Tax=unclassified Cyanobacteria TaxID=1983111 RepID=A0A2T1FCT6_9CYAN)

HSP 1 Score: 143 bits (360), Expect = 2.220e-36
Identity = 69/158 (43.67%), Postives = 101/158 (63.92%), Query Frame = 1
Query:    1 QGDITAAFGNLTRITAAALGVDRASIWMFDPEHDTLSCTDLFCASMNEHSAGQSIKVVEHPAYFSSLLNEEYIAADDAMNDGRLKAFKESYLKPLGIGSVLDVPILHGGRVQGVLCLEHIGAPITWTAEQRLFGTAIANFASLALERQERAKAEEDLR 474
             G+I  A   +T++    L VDRASIW +  +   + C DL+  + N+HSAG  +KV ++P+YF +L  E+ +AA DA  D R   F ESYL PL I S+LDVPI H G++ GV+CLEH G    WT +++ F + +A  A+LA+E ++R +AE +LR
Sbjct:  214 DGNIGEALREITQMATRTLNVDRASIWFYQEDKSAMCCADLYELTPNQHSAGAELKVADYPSYFQALNTEQVLAAVDAKTDPRTLEFSESYLMPLNISSMLDVPITHKGQIAGVICLEHQGTTRNWTLDEQSFASYVAQIAALAMEARDRKQAELNLR 371          
BLAST of mRNA_P-wetherbeei_contig21374.1.1 vs. uniprot
Match: Q3M458_TRIV2 (Multi-sensor hybrid histidine kinase n=7 Tax=Nostocaceae TaxID=1162 RepID=Q3M458_TRIV2)

HSP 1 Score: 142 bits (359), Expect = 3.110e-36
Identity = 71/154 (46.10%), Postives = 96/154 (62.34%), Query Frame = 1
Query:    1 QGDITAAFGNLTRITAAALGVDRASIWMFDPEHDTLSCTDLFCASMNEHSAGQSIKVVEHPAYFSSLLNEEYIAADDAMNDGRLKAFKESYLKPLGIGSVLDVPILHGGRVQGVLCLEHIGAPITWTAEQRLFGTAIANFASLALERQERAKAE 462
            QG++  A   +T + A  LG++RASIW++D     + C DLF  S N+HSAG S+   ++P YF +L  +E IAADDA  D R K F +SYL PL I ++LD PI   G   GVLCLE + +P  WT E + F  ++ N  SLALE +ER +AE
Sbjct:  230 QGNLKTALAEITNVAAHNLGIERASIWLYDETLTKIQCADLFEYSRNQHSAGMSLSAKDYPTYFQALHQDEAIAADDAYTDPRTKEFAQSYLTPLNITAMLDTPIRLAGETVGVLCLEAVKSPHHWTPEDQNFARSLTNLVSLALEARERQRAE 383          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21374.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0NFZ0_9CYAN3.800e-3845.91Uncharacterized protein n=2 Tax=unclassified Cyano... [more]
A0A533YGU2_9BACT2.990e-3745.86Response regulator n=1 Tax=Nitrospirae bacterium T... [more]
A0A351L8W8_9CYAN3.260e-3746.54Urea ABC transporter substrate-binding protein n=1... [more]
D8PBG3_9BACT3.470e-3748.10Putative Hybrid histidine kinase n=3 Tax=Nitrospir... [more]
UPI00155676AF8.770e-3741.14GAF domain-containing protein n=1 Tax=Microcoleus ... [more]
A0A1L6I3P2_9BURK1.440e-3646.10Histidine kinase n=2 Tax=Paraburkholderia TaxID=18... [more]
UPI0016880C461.700e-3645.16PAS domain S-box protein n=1 Tax=Microcoleus sp. F... [more]
K9VLE6_9CYAN2.170e-3643.13Adenylate/guanylate cyclase with GAF and PAS/PAC s... [more]
A0A2T1FCT6_9CYAN2.220e-3643.67Histidine kinase n=2 Tax=unclassified Cyanobacteri... [more]
Q3M458_TRIV23.110e-3646.10Multi-sensor hybrid histidine kinase n=7 Tax=Nosto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21374contigP-wetherbeei_contig21374:186..692 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog330214.NIDE0805
PFAMsGAF,GAF_2,HAMP,HATPase_c,HisKA,Hpt,PAS,PAS_3,PAS_4,PAS_8,PAS_9,Response_reg
Model size507
Max annot lvl2|Bacteria
KEGG koko:K20974
KEGG Pathwayko02020,ko02025,map02020,map02025
KEGG ModuleM00820
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.68e-38
EggNOG OGsCOG0784@1|root,COG2198@1|root,COG2203@1|root,COG5002@1|root,COG0784@2|Bacteria,COG2198@2|Bacteria,COG2203@2|Bacteria,COG5002@2|Bacteria,3J0ZF@40117|Nitrospirae
EC2.7.13.3
DescriptionEvidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology
Cds size507
COG categoryT
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko02022
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186223.6951418-CDS-P-wetherbeei_contig21374:185..6921683186223.6951418-CDS-P-wetherbeei_contig21374:185..692Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21374 186..692 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21374.1.1prot_P-wetherbeei_contig21374.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21374 186..692 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21374.1.1

>prot_P-wetherbeei_contig21374.1.1 ID=prot_P-wetherbeei_contig21374.1.1|Name=mRNA_P-wetherbeei_contig21374.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=169bp
QGDITAAFGNLTRITAAALGVDRASIWMFDPEHDTLSCTDLFCASMNEHS
AGQSIKVVEHPAYFSSLLNEEYIAADDAMNDGRLKAFKESYLKPLGIGSV
LDVPILHGGRVQGVLCLEHIGAPITWTAEQRLFGTAIANFASLALERQER
AKAEEDLREANRSVEAANK
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mRNA from alignment at P-wetherbeei_contig21374:186..692-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21374.1.1 ID=mRNA_P-wetherbeei_contig21374.1.1|Name=mRNA_P-wetherbeei_contig21374.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig21374:186..692- (Phaeothamnion wetherbeei SAG_119_79)
CAAGGCGATATCACCGCTGCGTTCGGCAACCTGACCCGCATCACCGCTGC CGCACTCGGCGTCGATCGCGCCAGCATCTGGATGTTCGATCCAGAGCACG ACACGTTGAGCTGTACCGACTTGTTCTGCGCCAGCATGAACGAGCACAGC GCCGGACAATCGATCAAGGTCGTCGAACACCCCGCCTACTTCTCCTCGCT TTTGAACGAGGAATACATCGCGGCGGACGATGCAATGAACGACGGACGCC TTAAGGCATTCAAGGAGAGTTATCTCAAGCCGCTAGGCATCGGGTCTGTT CTCGACGTGCCGATCCTGCATGGCGGGCGTGTGCAGGGCGTCCTGTGCCT GGAGCACATCGGGGCGCCGATCACCTGGACGGCCGAGCAACGCCTGTTCG GAACGGCAATCGCAAATTTCGCCTCGCTTGCACTCGAGCGGCAGGAGCGG GCGAAGGCCGAAGAGGATTTGCGGGAAGCCAACCGCTCGGTGGAAGCGGC GAACAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21374:186..692-

>mRNA_P-wetherbeei_contig21374.1.1 ID=mRNA_P-wetherbeei_contig21374.1.1|Name=mRNA_P-wetherbeei_contig21374.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig21374:186..692- (Phaeothamnion wetherbeei SAG_119_79)
CAAGGCGATATCACCGCTGCGTTCGGCAACCTGACCCGCATCACCGCTGC
CGCACTCGGCGTCGATCGCGCCAGCATCTGGATGTTCGATCCAGAGCACG
ACACGTTGAGCTGTACCGACTTGTTCTGCGCCAGCATGAACGAGCACAGC
GCCGGACAATCGATCAAGGTCGTCGAACACCCCGCCTACTTCTCCTCGCT
TTTGAACGAGGAATACATCGCGGCGGACGATGCAATGAACGACGGACGCC
TTAAGGCATTCAAGGAGAGTTATCTCAAGCCGCTAGGCATCGGGTCTGTT
CTCGACGTGCCGATCCTGCATGGCGGGCGTGTGCAGGGCGTCCTGTGCCT
GGAGCACATCGGGGCGCCGATCACCTGGACGGCCGAGCAACGCCTGTTCG
GAACGGCAATCGCAAATTTCGCCTCGCTTGCACTCGAGCGGCAGGAGCGG
GCGAAGGCCGAAGAGGATTTGCGGGAAGCCAACCGCTCGGTGGAAGCGGC
GAACAAG
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