mRNA_P-wetherbeei_contig21336.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21336.1.1
Unique NamemRNA_P-wetherbeei_contig21336.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig21336.1.1 vs. uniprot
Match: UPI0018C6DD4F (hypothetical protein n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=UPI0018C6DD4F)

HSP 1 Score: 106 bits (265), Expect = 3.550e-26
Identity = 72/157 (45.86%), Postives = 94/157 (59.87%), Query Frame = 1 
Query:    4 MSSASESPAGDLLWQQARTEYETTTKDLNTIAQALGVSRYKLIAEARNRGWKLRGTKNS-----STRATIQRFKDLLQKRLAQLEGEMDAIVAEVASAASERDIRPVNMLVRTLEKVLELERKDRTARARKRKERRKFDDAAREVLARRIRGLCGEE 459
            M+   E+P  D  W   R  YE   + +  IA  L +SR +LI EAR RGWK R  K++     STR T++R K+ +QKRL QLEGE+ A+  E  +  +ERDIR  N LVRTLEKVLELE K+R  R  +  E  + + A R+ LARRI  L  E+
Sbjct:    1 MTDTQEAPVID--WDAVRLRYEAGGESVVAIAATLQISRQQLIDEARARGWKPRNAKSAKPKSESTRETLRRLKEAVQKRLNQLEGEIGALKDEANALGNERDIRNTNTLVRTLEKVLELEHKERKKRGGRAAETARLNAAQRDELARRIASLGAEQ 155
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BLAST of mRNA_P-wetherbeei_contig21336.1.1 vs. uniprot
Match: A0A2W2AQT2_9HYPH (Uncharacterized protein n=2 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=A0A2W2AQT2_9HYPH)

HSP 1 Score: 85.1 bits (209), Expect = 4.470e-18
Identity = 50/113 (44.25%), Postives = 67/113 (59.29%), Query Frame = 1 
Query:    1 NMSSASESPAGDLLWQQARTEYETTTKDLNTIAQALGVSRYKLIAEARNRGWKLRGT---KNSSTRATIQRFKDLLQKRLAQLEGEMDAIVAEVASAASERDIRPVNMLVRTL 330
            +MS   + PA   +W + R  YE   + + TIA   G++R  L   AR  GWKLRG    +   TRAT+ RFK LLQ+RL + E ++  + AE  +A SERDIR +N LVRTL
Sbjct:    4 DMSGDGDEPAPAAVWARVRERYEHGIEAVATIAADAGITRQALACRARLEGWKLRGAARGRPQGTRATLARFKALLQQRLTEFEAQIGTLSAEANAATSERDIRAMNTLVRTL 116
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21336.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI0018C6DD4F3.550e-2645.86hypothetical protein n=1 Tax=Aestuariivirga litora... [more]
A0A2W2AQT2_9HYPH4.470e-1844.25Uncharacterized protein n=2 Tax=Aestuariivirga lit... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21336contigP-wetherbeei_contig21336:344..808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size465
Hectar predicted targeting categoryother localisation
Exons1
Cds size462
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186222.4683006-UTR-P-wetherbeei_contig21336:343..3461683186222.4683006-UTR-P-wetherbeei_contig21336:343..346Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig21336 344..346 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186222.480192-CDS-P-wetherbeei_contig21336:346..8081683186222.480192-CDS-P-wetherbeei_contig21336:346..808Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21336 347..808 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21336.1.1prot_P-wetherbeei_contig21336.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21336 347..808 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21336.1.1

>prot_P-wetherbeei_contig21336.1.1 ID=prot_P-wetherbeei_contig21336.1.1|Name=mRNA_P-wetherbeei_contig21336.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=154bp
MSSASESPAGDLLWQQARTEYETTTKDLNTIAQALGVSRYKLIAEARNRG
WKLRGTKNSSTRATIQRFKDLLQKRLAQLEGEMDAIVAEVASAASERDIR
PVNMLVRTLEKVLELERKDRTARARKRKERRKFDDAAREVLARRIRGLCG
EEEG
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mRNA from alignment at P-wetherbeei_contig21336:344..808+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21336.1.1 ID=mRNA_P-wetherbeei_contig21336.1.1|Name=mRNA_P-wetherbeei_contig21336.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig21336:344..808+ (Phaeothamnion wetherbeei SAG_119_79)
AACATGAGCAGCGCGAGCGAAAGCCCCGCGGGCGATTTGCTGTGGCAGCA
GGCCCGCACCGAATACGAGACAACAACAAAAGATTTGAATACCATCGCCC
AGGCGCTTGGCGTCAGCCGCTACAAGCTGATTGCCGAAGCCCGCAACCGC
GGCTGGAAATTGCGCGGCACTAAGAACAGCAGCACCCGCGCCACCATCCA
GCGCTTCAAGGACCTGCTGCAGAAACGCCTCGCGCAGCTTGAAGGCGAAA
TGGACGCAATCGTGGCGGAGGTCGCTTCCGCTGCCAGCGAACGTGATATC
CGCCCGGTGAACATGCTGGTGCGCACTTTGGAAAAGGTATTGGAACTTGA
ACGCAAGGATCGCACTGCCCGCGCCAGAAAACGCAAGGAACGGCGGAAAT
TTGATGACGCCGCCCGTGAGGTGCTTGCGCGCCGCATTAGAGGTTTGTGC
GGCGAAGAGGAAGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21336:344..808+

>mRNA_P-wetherbeei_contig21336.1.1 ID=mRNA_P-wetherbeei_contig21336.1.1|Name=mRNA_P-wetherbeei_contig21336.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig21336:344..808+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCAGCGCGAGCGAAAGCCCCGCGGGCGATTTGCTGTGGCAGCAGGC
CCGCACCGAATACGAGACAACAACAAAAGATTTGAATACCATCGCCCAGG
CGCTTGGCGTCAGCCGCTACAAGCTGATTGCCGAAGCCCGCAACCGCGGC
TGGAAATTGCGCGGCACTAAGAACAGCAGCACCCGCGCCACCATCCAGCG
CTTCAAGGACCTGCTGCAGAAACGCCTCGCGCAGCTTGAAGGCGAAATGG
ACGCAATCGTGGCGGAGGTCGCTTCCGCTGCCAGCGAACGTGATATCCGC
CCGGTGAACATGCTGGTGCGCACTTTGGAAAAGGTATTGGAACTTGAACG
CAAGGATCGCACTGCCCGCGCCAGAAAACGCAAGGAACGGCGGAAATTTG
ATGACGCCGCCCGTGAGGTGCTTGCGCGCCGCATTAGAGGTTTGTGCGGC
GAAGAGGAAGGG
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