mRNA_P-wetherbeei_contig21332.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21332.1.1
Unique NamemRNA_P-wetherbeei_contig21332.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig21332.1.1 vs. uniprot
Match: UPI0006981A0C (HNH endonuclease n=1 Tax=Hymenobacter terrenus TaxID=1629124 RepID=UPI0006981A0C)

HSP 1 Score: 60.8 bits (146), Expect = 1.390e-7
Identity = 36/101 (35.64%), Postives = 58/101 (57.43%), Query Frame = 1 
Query:   55 SRMVAGSKNILVSNQGKVWSTWNGKELEMTVARGYHSVQISVDGRGTSNRKVPDLVAEAFVPRTCPPHVYCMVDHINRDKFDNPAENLRWSTHHLNSYNRS 357
            +R V+   N  +++ G+V+ST   + L+ ++  GY SV +S +  G+    +  LVA+ FVP    P     VDH++RDK +N A NLRW T   N +N++
Sbjct:   32 AREVSNYPNYYITDCGRVFSTNINRFLKPSIKTGYRSVSLS-NADGSKRFCIHRLVAQHFVPN---PESRPFVDHVDRDKLNNHASNLRWCTPQQNCFNQT 128
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BLAST of mRNA_P-wetherbeei_contig21332.1.1 vs. uniprot
Match: UPI0003FD6AB1 (HNH endonuclease n=1 Tax=Runella zeae TaxID=94255 RepID=UPI0003FD6AB1)

HSP 1 Score: 57.8 bits (138), Expect = 1.830e-6
Identity = 40/116 (34.48%), Postives = 64/116 (55.17%), Query Frame = 1 
Query:   88 VSNQGKVWSTWNGKE----LEMTVARGYHSVQISVDGRGTSNRKVPDLVAEAFVPRTCPPHVYCMVDHINRDKFDNPAENLRWST-HHLNSYNRSDQPWGSVVKVKDSNHLRPWQL 420
            VSN G++ S  NG++    ++ +V +GY S+ I + G  T NR V  LVA+ FV R    H +  V H++ DK +N A+NL+W T   +  +NR +    +V+  K     R ++L
Sbjct:   29 VSNYGRLCSYQNGEKEGTIIKGSVIQGYRSLNIRIPGGKTINRYVHKLVADIFVKRESESHKF--VIHLDFDKQNNRADNLKWVTKEQMIEHNRKNP---AVINRKIPTRTRNYKL 139
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BLAST of mRNA_P-wetherbeei_contig21332.1.1 vs. uniprot
Match: A0A4Y5MYT2_9CAUD (HNHc domain-containing protein n=1 Tax=Lactococcus phage CHPC971 TaxID=2575255 RepID=A0A4Y5MYT2_9CAUD)

HSP 1 Score: 57.4 bits (137), Expect = 2.570e-6
Identity = 35/97 (36.08%), Postives = 49/97 (50.52%), Query Frame = 1 
Query:   82 ILVSNQGKVWSTWNGKELEMT-------VARGYHSVQISVDGRGTSNRKVPDLVAEAFVPRTCPPHVYCMVDHINRDKFDNPAENLRWSTHHLNSYN 351
            + +SN G+V+          +        A GY  V +S++G+   N+ V  +VAE F+P    PH    VDHIN ++ DN A NLRW TH  N  N
Sbjct:   21 VKISNMGRVYKKGTNTHKNQSGILKNAITAHGYIRVHLSINGK-VYNKPVHRMVAEMFIPN---PHNKPYVDHINANRSDNRASNLRWVTHSENMNN 113
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BLAST of mRNA_P-wetherbeei_contig21332.1.1 vs. uniprot
Match: A0A7U3ZNK1_RUNSL (NUMOD4 domain-containing protein n=3 Tax=Runella TaxID=105 RepID=A0A7U3ZNK1_RUNSL)

HSP 1 Score: 56.6 bits (135), Expect = 4.700e-6
Identity = 41/128 (32.03%), Postives = 64/128 (50.00%), Query Frame = 1 
Query:   88 VSNQGKVWSTWNGKE----LEMTVARGYHSVQISVDGRGTSNRKVPDLVAEAFVPRTCPPHVYCMVDHINRDKFDNPAENLRWSTHHLNSYNRSDQPWGSVVKVKDSNHLRPWQLKYRLPGDASHAPL 459
            VSN G++ S  N ++    ++ +V +GY S+ I + G  T N+ V  LVAE F+ R    H Y  V H++ DK +N A+NL+W+T                V++ D N   P  +  +LP   S+  L
Sbjct:   30 VSNYGRLRSFQNEEKKAVIIKGSVIQGYRSLNIRIAGGKTINKYVHKLVAELFLKRESDLHKY--VIHLDFDKQNNRADNLKWAT---------------KVEMVDHNRENPAVINRKLPTRTSNYKL 140
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BLAST of mRNA_P-wetherbeei_contig21332.1.1 vs. uniprot
Match: A0A2Z4PZJ8_9CAUD (Endonuclease n=1 Tax=Enterococcus phage LY0323 TaxID=2233540 RepID=A0A2Z4PZJ8_9CAUD)

HSP 1 Score: 52.8 bits (125), Expect = 8.430e-5
Identity = 31/69 (44.93%), Postives = 40/69 (57.97%), Query Frame = 1 
Query:  127 KELEMTVARGYHSVQISVDGRGTSNRKVPDLVAEAFVPRTCPPHVYCMVDHINRDKFDNPAENLRWSTH 333
            KEL   VA GY  + +  + +      +  LVAEAF+P    P     VDHINRD+FDN  ENLRW+T+
Sbjct:   52 KELSGKVANGYKKITLYNNVKRIEY--LHRLVAEAFIPN---PENKPTVDHINRDRFDNRVENLRWATY 115
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21332.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI0006981A0C1.390e-735.64HNH endonuclease n=1 Tax=Hymenobacter terrenus Tax... [more]
UPI0003FD6AB11.830e-634.48HNH endonuclease n=1 Tax=Runella zeae TaxID=94255 ... [more]
A0A4Y5MYT2_9CAUD2.570e-636.08HNHc domain-containing protein n=1 Tax=Lactococcus... [more]
A0A7U3ZNK1_RUNSL4.700e-632.03NUMOD4 domain-containing protein n=3 Tax=Runella T... [more]
A0A2Z4PZJ8_9CAUD8.430e-544.93Endonuclease n=1 Tax=Enterococcus phage LY0323 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21332contigP-wetherbeei_contig21332:243..1104 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog761193.Runsl_4162
PFAMsHNH_3,NUMOD4
Model size862
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.89e-07
EggNOG OGs2AFQQ@1|root,315SK@2|Bacteria,4NJD4@976|Bacteroidetes,47PFM@768503|Cytophagia
DescriptionNUMOD4 motif
Cds size774
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186222.3532116-UTR-P-wetherbeei_contig21332:242..2701683186222.3532116-UTR-P-wetherbeei_contig21332:242..270Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig21332 243..270 -
1683186222.3738298-UTR-P-wetherbeei_contig21332:1044..11041683186222.3738298-UTR-P-wetherbeei_contig21332:1044..1104Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig21332 1045..1104 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186222.3630319-CDS-P-wetherbeei_contig21332:270..10441683186222.3630319-CDS-P-wetherbeei_contig21332:270..1044Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21332 271..1044 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21332.1.1prot_P-wetherbeei_contig21332.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21332 271..1044 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21332.1.1

>prot_P-wetherbeei_contig21332.1.1 ID=prot_P-wetherbeei_contig21332.1.1|Name=mRNA_P-wetherbeei_contig21332.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=258bp
MVAGSKNILVSNQGKVWSTWNGKELEMTVARGYHSVQISVDGRGTSNRKV
PDLVAEAFVPRTCPPHVYCMVDHINRDKFDNPAENLRWSTHHLNSYNRSD
QPWGSVVKVKDSNHLRPWQLKYRLPGDASHAPLRQAYFETEGEARGERSL
RHEDDMISLEEKAEEDAAICFECHPELKWRSVAVQVNPEDLGSEPKSKLH
QHSVAVQVNAEDVLAVAVEREEKADNDSEAIDRRLREEDLRPAPKRPRYK
IYGDRGL*
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mRNA from alignment at P-wetherbeei_contig21332:243..1104-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21332.1.1 ID=mRNA_P-wetherbeei_contig21332.1.1|Name=mRNA_P-wetherbeei_contig21332.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=862bp|location=Sequence derived from alignment at P-wetherbeei_contig21332:243..1104- (Phaeothamnion wetherbeei SAG_119_79)
AAGTCGAGGCGGGCAAGACATGCTGCCGAGGACGTCGTACAAGCTGCCGC
CCGGTCGAGAATGGTCGCCGGTTCCAAGAACATTCTCGTATCGAACCAAG
GAAAAGTCTGGAGCACGTGGAACGGGAAGGAGCTGGAGATGACGGTGGCC
CGCGGGTACCACTCGGTCCAGATCTCTGTGGACGGACGCGGAACCTCAAA
CCGCAAGGTGCCCGACCTCGTCGCCGAGGCCTTTGTACCGAGGACCTGCC
CCCCGCACGTCTACTGCATGGTGGACCACATTAACCGCGACAAATTCGAC
AACCCGGCCGAGAACTTGCGGTGGTCGACGCACCATCTCAACAGCTACAA
CCGCAGCGACCAGCCGTGGGGTAGCGTCGTCAAAGTCAAGGACTCTAACC
ACTTGAGGCCGTGGCAACTGAAGTACAGGCTGCCGGGCGACGCGTCCCAC
GCGCCGCTGCGCCAGGCGTACTTTGAGACGGAAGGAGAGGCGCGCGGAGA
GAGGTCGCTGCGCCACGAAGATGATATGATCTCGCTCGAGGAGAAGGCGG
AAGAGGACGCCGCAATCTGCTTCGAGTGTCATCCGGAGCTCAAGTGGCGC
AGCGTCGCGGTCCAAGTGAACCCGGAGGACTTGGGGTCTGAGCCCAAGTC
AAAGCTCCATCAGCACAGCGTCGCGGTGCAAGTGAACGCGGAAGACGTGC
TCGCCGTCGCCGTCGAGCGGGAAGAAAAGGCTGACAACGACAGCGAAGCT
ATAGACAGGCGCCTTCGAGAGGAGGACTTGCGACCCGCCCCGAAGCGGCC
CCGTTACAAGATCTACGGCGACAGAGGTCTATAATTATTCTGCACCCACA
ATTGTTCTGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21332:243..1104-

>mRNA_P-wetherbeei_contig21332.1.1 ID=mRNA_P-wetherbeei_contig21332.1.1|Name=mRNA_P-wetherbeei_contig21332.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=774bp|location=Sequence derived from alignment at P-wetherbeei_contig21332:243..1104- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCGCCGGTTCCAAGAACATTCTCGTATCGAACCAAGGAAAAGTCTG
GAGCACGTGGAACGGGAAGGAGCTGGAGATGACGGTGGCCCGCGGGTACC
ACTCGGTCCAGATCTCTGTGGACGGACGCGGAACCTCAAACCGCAAGGTG
CCCGACCTCGTCGCCGAGGCCTTTGTACCGAGGACCTGCCCCCCGCACGT
CTACTGCATGGTGGACCACATTAACCGCGACAAATTCGACAACCCGGCCG
AGAACTTGCGGTGGTCGACGCACCATCTCAACAGCTACAACCGCAGCGAC
CAGCCGTGGGGTAGCGTCGTCAAAGTCAAGGACTCTAACCACTTGAGGCC
GTGGCAACTGAAGTACAGGCTGCCGGGCGACGCGTCCCACGCGCCGCTGC
GCCAGGCGTACTTTGAGACGGAAGGAGAGGCGCGCGGAGAGAGGTCGCTG
CGCCACGAAGATGATATGATCTCGCTCGAGGAGAAGGCGGAAGAGGACGC
CGCAATCTGCTTCGAGTGTCATCCGGAGCTCAAGTGGCGCAGCGTCGCGG
TCCAAGTGAACCCGGAGGACTTGGGGTCTGAGCCCAAGTCAAAGCTCCAT
CAGCACAGCGTCGCGGTGCAAGTGAACGCGGAAGACGTGCTCGCCGTCGC
CGTCGAGCGGGAAGAAAAGGCTGACAACGACAGCGAAGCTATAGACAGGC
GCCTTCGAGAGGAGGACTTGCGACCCGCCCCGAAGCGGCCCCGTTACAAG
ATCTACGGCGACAGAGGTCTATAA
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