mRNA_P-wetherbeei_contig21331.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21331.1.1
Unique NamemRNA_P-wetherbeei_contig21331.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig21331.1.1 vs. uniprot
Match: A0A537DJA7_9PROT (Type IV pilus biogenesis/stability protein PilW n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537DJA7_9PROT)

HSP 1 Score: 364 bits (934), Expect = 1.060e-121
Identity = 202/344 (58.72%), Postives = 243/344 (70.64%), Query Frame = 1
Query:    1 PDPVQPVPRIRVRALGRRTHPPVRGDPPARRAHRDHAQDPRRVDRRGLRPAGRRGRRPHPPYARKEAHQRASQGGSRMKGSRLKCLLPLLFAALVAGCAGGGSSPTEPELSQSQADITQTGDARNRARTNTELAALYYERGNLGVALEVLRTATGADPSYAPAHGMLGIVYMDLRENVLAQQSFERALRYAPNDPDINHNYGWFLCQTGKEAESTRYFLQAVRNPLYATPAKSYSSAGQCALRKDNLKDAADFFGRALKLEPDEPNALLMLAGIQYRSGQMEEARKLISRYGRVVEPNAEGLWLAIRIERKVGDRAAENSYANQLRRRFPSSREYQQMQRGDYD 1032
            PD VQ  P  RV  L     P +R DP ARR   DHAQDPRR  R  LR A RR  RPH       A QR +    R  G+R+K LL L+F AL AGCAG  S P+      +   + + G+ RNRA+ +TELAA YY RGN+GVALE LR A  ADPSYAP   M G+VYMDLREN LA+ SFERALR +PNDPDINHNYG FLCQT +E ++  YFLQA+RNPLYA P KSYS+AG C LR +NLKDA +FF RAL+L+P+EP +LL L  I+YR G ++EARKL+S++ ++V P+AE LWLA+RIERK+G+R AE SYANQLRRRFP S EYQ +QRG +D
Sbjct:   46 PDSVQSFPAFRVSPLEPGADPALRRDPAARRPDGDHAQDPRRWHRGRLRSACRRCGRPH-------AAQRTAHSSER--GARVKRLLYLVFLAL-AGCAGQTSEPSV----DTGTIVGEVGEPRNRAKIHTELAAQYYSRGNMGVALEELRIAAAADPSYAPTQSMFGLVYMDLRENQLAESSFERALRLSPNDPDINHNYGVFLCQTRREGQAITYFLQAIRNPLYAAPWKSYSAAGVCTLRTNNLKDAEEFFKRALRLDPEEPISLLSLGQIRYRQGSLDEARKLVSQHNKLVAPSAESLWLALRIERKLGERVAEQSYANQLRRRFPGSPEYQALQRGSFD 375          
BLAST of mRNA_P-wetherbeei_contig21331.1.1 vs. uniprot
Match: A0A1F4F700_9PROT (Type IV pilus biogenesis/stability protein PilW n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4F700_9PROT)

HSP 1 Score: 335 bits (859), Expect = 5.560e-112
Identity = 166/260 (63.85%), Postives = 202/260 (77.69%), Query Frame = 1
Query:  262 PLLFAAL--VAGCAGGGSSP-TEPELSQSQADITQTGDARNRARTNTELAALYYERGNLGVALEVLRTATGADPSYAPAHGMLGIVYMDLRENVLAQQSFERALRYAPNDPDINHNYGWFLCQTGKEAESTRYFLQAVRNPLYATPAKSYSSAGQCALRKDNLKDAADFFGRALKLEPDEPNALLMLAGIQYRSGQMEEARKLISRYGRVVEPNAEGLWLAIRIERKVGDRAAENSYANQLRRRFPSSREYQQMQRGDYD 1032
            P+ FAA   +A  AGG ++P  E    +S   +   GD RNRAR +TELAALYY R N+GVALE LRTA  AD SYAPAHG+ G+VYM+LREN LA+ SFERALR APND +INHNYGWF CQTG+E+ S RYFLQAVRNPLY  P +SY++AG C +R +NLKDA +FF RALK+EPDEP++LL L  I+YR G +EEARKL+ R+ R+V P AE LWLA+R ERK+G+R AE S+ANQLRRR+P SREYQ +QRG+YD
Sbjct:    4 PICFAAALGIAMLAGGCAAPQAEAPTMESSTIVGDVGDPRNRARVHTELAALYYSRNNMGVALEELRTAVAADASYAPAHGVFGLVYMELRENQLAEASFERALRLAPNDSEINHNYGWFQCQTGRESGSIRYFLQAVRNPLYPAPWRSYAAAGLCMMRVNNLKDAEEFFQRALKIEPDEPSSLLQLGQIRYRQGSLEEARKLVGRFNRLVAPTAESLWLAVRTERKLGERVAEASFANQLRRRYPQSREYQALQRGEYD 263          
BLAST of mRNA_P-wetherbeei_contig21331.1.1 vs. uniprot
Match: A0A521YUJ6_9PROT (Type IV pilus biogenesis/stability protein PilW n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521YUJ6_9PROT)

HSP 1 Score: 330 bits (847), Expect = 3.090e-110
Identity = 164/251 (65.34%), Postives = 197/251 (78.49%), Query Frame = 1
Query:  280 LVAGCAGGGSSPTEPELSQSQADITQTGDARNRARTNTELAALYYERGNLGVALEVLRTATGADPSYAPAHGMLGIVYMDLRENVLAQQSFERALRYAPNDPDINHNYGWFLCQTGKEAESTRYFLQAVRNPLYATPAKSYSSAGQCALRKDNLKDAADFFGRALKLEPDEPNALLMLAGIQYRSGQMEEARKLISRYGRVVEPNAEGLWLAIRIERKVGDRAAENSYANQLRRRFPSSREYQQMQRGDYD 1032
            +VA C    S+P   E S     I + GD RNRAR +TELAA YY RGN+GVALE LRTAT AD SYAPA+  LG+VYM+LREN LA+Q+FERALR APND DINHNYGWFLCQT +E +S +YF+QAVRNPLYATP +S+S+AG C +R +NLKDA DFF RALKL+PDEP ALL L  I+YR G M EAR+L++RY ++V P+AE LWLA+RIERK+G+  AE SYANQLRRR+P S EYQ +QRG +D
Sbjct:   12 VVAAC----STPAPVEPSMDTGAIGEIGDPRNRARVHTELAAEYYSRGNMGVALEELRTATAADSSYAPAYSALGLVYMELRENQLAEQNFERALRLAPNDGDINHNYGWFLCQTKREPQSIKYFMQAVRNPLYATPWRSWSAAGVCTMRTNNLKDAEDFFQRALKLDPDEPQALLQLGQIRYRQGSMPEARRLVTRYNKLVNPSAESLWLALRIERKLGEYVAERSYANQLRRRYPRSPEYQALQRGQFD 258          
BLAST of mRNA_P-wetherbeei_contig21331.1.1 vs. uniprot
Match: A0A1F4F1A3_9PROT (Type IV pilus biogenesis/stability protein PilW n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4F1A3_9PROT)

HSP 1 Score: 328 bits (840), Expect = 1.550e-109
Identity = 158/228 (69.30%), Postives = 188/228 (82.46%), Query Frame = 1
Query:  349 ITQTGDARNRARTNTELAALYYERGNLGVALEVLRTATGADPSYAPAHGMLGIVYMDLRENVLAQQSFERALRYAPNDPDINHNYGWFLCQTGKEAESTRYFLQAVRNPLYATPAKSYSSAGQCALRKDNLKDAADFFGRALKLEPDEPNALLMLAGIQYRSGQMEEARKLISRYGRVVEPNAEGLWLAIRIERKVGDRAAENSYANQLRRRFPSSREYQQMQRGDYD 1032
            I + GD RNRAR +TELA+ Y+ RGN+GVALE LR A+ AD +YAPAH M G VYM+LREN LA+QSFERALR APND DINHNYGWFLCQT +E +S +YF+QAVRNPLYATP +SYS+AG CA+R +NLKDA DFF RALKLEPDEP +LL L  I+YR G+M +AR+L+SRY ++V PNA  LWLA+RIERK+G+R AE SYANQLRRRFP S EYQ +QRG +D
Sbjct:    7 IGEPGDPRNRARIHTELASAYFSRGNMGVALEELRIASAADATYAPAHSMFGTVYMELRENQLAEQSFERALRLAPNDGDINHNYGWFLCQTKREPDSIKYFMQAVRNPLYATPWRSYSAAGLCAMRTNNLKDAEDFFQRALKLEPDEPESLLQLGYIRYRQGKMGDARRLVSRYNKLVNPNAGSLWLALRIERKLGERVAEQSYANQLRRRFPGSPEYQALQRGQFD 234          
BLAST of mRNA_P-wetherbeei_contig21331.1.1 vs. uniprot
Match: A0A1F3YLV3_9PROT (Type IV pilus biogenesis/stability protein PilW n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3YLV3_9PROT)

HSP 1 Score: 321 bits (823), Expect = 1.660e-106
Identity = 161/265 (60.75%), Postives = 203/265 (76.60%), Query Frame = 1
Query:  241 SRLKCL-LPLLFAALVAGCAGGGSSPTEPELSQSQADITQTGDARNRARTNTELAALYYERGNLGVALEVLRTATGADPSYAPAHGMLGIVYMDLRENVLAQQSFERALRYAPNDPDINHNYGWFLCQTGKEAESTRYFLQAVRNPLYATPAKSYSSAGQCALRKDNLKDAADFFGRALKLEPDEPNALLMLAGIQYRSGQMEEARKLISRYGRVVEPNAEGLWLAIRIERKVGDRAAENSYANQLRRRFPSSREYQQMQRGDYD 1032
            +RL C  L  + A ++AGCAG  +S TEP L +S       GD RNRA+ +TEL ALYY RGN+ VALE LR A  ADPSY   + M G+VYM+LRE+ LAQ +FER L+ +P DPDINHNYGWFLCQTG+E ES +YF+QAVRNPLY  P +SYS+AG C++RK+NLK+A +FF RAL+ EPD+  +LL L  I+YR G +EEARKL+ RY ++VEP  E LWLA+R+ERK+G+R AE S+ANQLRRRF +SREYQQ+QRG+YD
Sbjct:    2 NRLHCTALAAVAAVMLAGCAGTQTS-TEPML-ESAGIAGDVGDPRNRAKVHTELGALYYGRGNMAVALEELRIAAAADPSYPLTYSMFGLVYMELREHRLAQTNFERGLQLSPTDPDINHNYGWFLCQTGRENESIKYFMQAVRNPLYPAPWRSYSAAGICSMRKNNLKEAEEFFQRALQQEPDDTASLLQLGQIRYRQGGLEEARKLVGRYNKIVEPTPESLWLALRVERKLGERVAEASFANQLRRRFSASREYQQLQRGEYD 264          
BLAST of mRNA_P-wetherbeei_contig21331.1.1 vs. uniprot
Match: A0A537AEP6_9PROT (Type IV pilus biogenesis/stability protein PilW n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537AEP6_9PROT)

HSP 1 Score: 320 bits (819), Expect = 5.100e-106
Identity = 154/251 (61.35%), Postives = 195/251 (77.69%), Query Frame = 1
Query:  280 LVAGCAGGGSSPTEPELSQSQADITQTGDARNRARTNTELAALYYERGNLGVALEVLRTATGADPSYAPAHGMLGIVYMDLRENVLAQQSFERALRYAPNDPDINHNYGWFLCQTGKEAESTRYFLQAVRNPLYATPAKSYSSAGQCALRKDNLKDAADFFGRALKLEPDEPNALLMLAGIQYRSGQMEEARKLISRYGRVVEPNAEGLWLAIRIERKVGDRAAENSYANQLRRRFPSSREYQQMQRGDYD 1032
            L+AGCA     PT   +      + + GD RNRAR +TELA  YYERGN+GVAL+ LR AT ADPSYA A+ +LG+V+M+LRE   A+ SFERALR +PND DINHN+GWFLCQ  +E ES +YFLQA+RNPLY +P ++YS+AG C++R +N+KDA +FF RALKL+PDEP ALL L  I+YR G + +ARKL+SRY ++V P++E LWLA+RIER++G+R  E SYANQLRRRFP SREYQ +QRGDYD
Sbjct:   12 LIAGCATREQDPTGGTI------VGEVGDPRNRARVHTELAGAYYERGNMGVALDELRQATTADPSYAQAYSLLGLVHMELRETREAESSFERALRLSPNDADINHNFGWFLCQNSREKESIKYFLQALRNPLYQSPWRTYSAAGVCSMRVNNVKDAEEFFQRALKLDPDEPAALLQLGQIRYRQGNIGDARKLVSRYNKLVSPSSESLWLALRIERRLGERVGEQSYANQLRRRFPGSREYQSLQRGDYD 256          
BLAST of mRNA_P-wetherbeei_contig21331.1.1 vs. uniprot
Match: A0A1F4CSR5_9PROT (Type IV pilus biogenesis/stability protein PilW n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 TaxID=1797504 RepID=A0A1F4CSR5_9PROT)

HSP 1 Score: 320 bits (819), Expect = 5.100e-106
Identity = 159/255 (62.35%), Postives = 191/255 (74.90%), Query Frame = 1
Query:  268 LFAALVAGCAGGGSSPTEPELSQSQADITQTGDARNRARTNTELAALYYERGNLGVALEVLRTATGADPSYAPAHGMLGIVYMDLRENVLAQQSFERALRYAPNDPDINHNYGWFLCQTGKEAESTRYFLQAVRNPLYATPAKSYSSAGQCALRKDNLKDAADFFGRALKLEPDEPNALLMLAGIQYRSGQMEEARKLISRYGRVVEPNAEGLWLAIRIERKVGDRAAENSYANQLRRRFPSSREYQQMQRGDYD 1032
            L  AL AGCA      TE     S   + + GD RNRAR +TELA+LYY RGN+ VALE LRTAT  D SYAPA+ M G+VYM LREN LA+ +FERALR +PNDPDINHNYGWFLCQ+ +E +S RYFLQA+RNPLYATP +SYS+AG C LR  N KDA +FF RAL+LEPDEP +LL L  I+YR G M EARKL+SR+ ++V P  E LWLA+R+ERK+G R AE S+A +LRRR+P S EYQ +QRG+ D
Sbjct:    7 LLLALAAGCASDTGPTTE-----SGPIVGEVGDPRNRARLHTELASLYYGRGNMAVALEELRTATRVDSSYAPAYNMFGVVYMALRENRLAEDNFERALRLSPNDPDINHNYGWFLCQSAREPDSIRYFLQAIRNPLYATPWRSYSAAGVCTLRNKNEKDAEEFFQRALRLEPDEPASLLQLGQIRYRQGNMPEARKLVSRFNKLVTPTPESLWLALRVERKLGQRVAERSFATELRRRYPGSPEYQALQRGELD 256          
BLAST of mRNA_P-wetherbeei_contig21331.1.1 vs. uniprot
Match: A0A536YB67_9PROT (Type IV pilus biogenesis/stability protein PilW n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536YB67_9PROT)

HSP 1 Score: 317 bits (813), Expect = 4.440e-105
Identity = 157/255 (61.57%), Postives = 194/255 (76.08%), Query Frame = 1
Query:  271 FAALVAGCAGGGSSPTEPELSQSQADITQ-TGDARNRARTNTELAALYYERGNLGVALEVLRTATGADPSYAPAHGMLGIVYMDLRENVLAQQSFERALRYAPNDPDINHNYGWFLCQTGKEAESTRYFLQAVRNPLYATPAKSYSSAGQCALRKDNLKDAADFFGRALKLEPDEPNALLMLAGIQYRSGQMEEARKLISRYGRVVEPNAEGLWLAIRIERKVGDRAAENSYANQLRRRFPSSREYQQMQRGDYD 1032
             A L+AGCA    +P     S     IT    + RNRAR +T+LAA YYERG + VAL+ LR AT AD SYAPA+G+ G+VY +L+ENV AQ SFER LR APNDPDINH+YGWFLCQ G+E E  R+F+QAV+NPLY  P +SYS+AG C+LR+DN+KDA DFF RALKL+PDEP +LL L  I+YR G+ EEARKL++R  ++V P+AE LWLA+RIER++G+R AE SYANQLRRRFP S EYQ +QRG Y+
Sbjct:    9 LAVLIAGCAAQPQAP-----SSDTGTITGGVSEPRNRARVHTDLAAAYYERGAMSVALQELRAATDADASYAPAYGVYGLVYQELKENVFAQDSFERGLRLAPNDPDINHHYGWFLCQNGREQEGIRHFMQAVKNPLYQAPWRSYSAAGLCSLRQDNVKDAEDFFQRALKLDPDEPASLLKLGEIRYRQGKAEEARKLVARRNKLVSPSAESLWLALRIERRLGERVAEQSYANQLRRRFPGSPEYQSLQRGHYE 258          
BLAST of mRNA_P-wetherbeei_contig21331.1.1 vs. uniprot
Match: A0A537E215_9PROT (Type IV pilus biogenesis/stability protein PilW n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537E215_9PROT)

HSP 1 Score: 313 bits (803), Expect = 1.030e-103
Identity = 155/250 (62.00%), Postives = 192/250 (76.80%), Query Frame = 1
Query:  283 VAGCAGGGSSPTEPELSQSQADITQTGDARNRARTNTELAALYYERGNLGVALEVLRTATGADPSYAPAHGMLGIVYMDLRENVLAQQSFERALRYAPNDPDINHNYGWFLCQTGKEAESTRYFLQAVRNPLYATPAKSYSSAGQCALRKDNLKDAADFFGRALKLEPDEPNALLMLAGIQYRSGQMEEARKLISRYGRVVEPNAEGLWLAIRIERKVGDRAAENSYANQLRRRFPSSREYQQMQRGDYD 1032
            +AGCAG  S P+      +   + + G+ RNRA+ +TELAA YY RGN+GVALE LR A  AD SYAP   M G+VYMDLREN LA+ SFERALR +PNDPDINHNYG FLCQT +E ++  YFLQA+RNPLYA P KSYS+AG C LR +NLKDA +FF RAL+L+P+E  +LL L  I+YR G ++EARKL+S++ ++V P+AE LWLA+RIERK+G+R AE SYANQLRRRFP S EYQ +QRG +D
Sbjct:    3 LAGCAGQTSEPSV----DTGTIVGEVGEPRNRAKIHTELAAQYYNRGNMGVALEELRIAAAADSSYAPTQSMFGLVYMDLRENQLAESSFERALRLSPNDPDINHNYGVFLCQTQREGQAIAYFLQAIRNPLYAAPWKSYSAAGVCTLRTNNLKDAEEFFKRALRLDPEEAISLLSLGQIRYRQGSLDEARKLVSQHNKLVAPSAESLWLALRIERKLGERVAEQSYANQLRRRFPGSPEYQALQRGSFD 248          
BLAST of mRNA_P-wetherbeei_contig21331.1.1 vs. uniprot
Match: A0A177QZS3_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium SCGC AG-212-J23 TaxID=1799662 RepID=A0A177QZS3_9PROT)

HSP 1 Score: 313 bits (803), Expect = 1.460e-103
Identity = 149/250 (59.60%), Postives = 195/250 (78.00%), Query Frame = 1
Query:  283 VAGCAGGGSSPTEPELSQSQADITQTGDARNRARTNTELAALYYERGNLGVALEVLRTATGADPSYAPAHGMLGIVYMDLRENVLAQQSFERALRYAPNDPDINHNYGWFLCQTGKEAESTRYFLQAVRNPLYATPAKSYSSAGQCALRKDNLKDAADFFGRALKLEPDEPNALLMLAGIQYRSGQMEEARKLISRYGRVVEPNAEGLWLAIRIERKVGDRAAENSYANQLRRRFPSSREYQQMQRGDYD 1032
            +AGCA     PT     ++   + +TGD+R+RART+T+LAA YY RG++ +ALE LR AT AD SY PAH MLG+VYM+L+EN LA+ SFERALR +P DPDINHNYGWFLC T +E +S +YFLQA+RNPLYA P +SYS+AG C+L+  N KDA +FF RALKL+PD+  +L+ LA I+YR G+++EAR+L+SRY +++ P+AE LWLA+RIER+ G+R AE S ANQLRRR+P S EY+ +QRG YD
Sbjct:   13 LAGCATHSDEPTV----ETGTIVGETGDSRSRARTHTDLAAAYYARGSMAIALEELRVATAADASYPPAHSMLGLVYMELKENQLAETSFERALRLSPTDPDINHNYGWFLCNTSREQDSIKYFLQAIRNPLYAAPWRSYSAAGVCSLKSGNAKDADEFFQRALKLDPDDAPSLIKLAEIRYRQGKIDEARRLVSRYNKLIAPSAESLWLALRIERRAGERVAEQSLANQLRRRYPGSDEYRALQRGQYD 258          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21331.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A537DJA7_9PROT1.060e-12158.72Type IV pilus biogenesis/stability protein PilW n=... [more]
A0A1F4F700_9PROT5.560e-11263.85Type IV pilus biogenesis/stability protein PilW n=... [more]
A0A521YUJ6_9PROT3.090e-11065.34Type IV pilus biogenesis/stability protein PilW n=... [more]
A0A1F4F1A3_9PROT1.550e-10969.30Type IV pilus biogenesis/stability protein PilW n=... [more]
A0A1F3YLV3_9PROT1.660e-10660.75Type IV pilus biogenesis/stability protein PilW n=... [more]
A0A537AEP6_9PROT5.100e-10661.35Type IV pilus biogenesis/stability protein PilW n=... [more]
A0A1F4CSR5_9PROT5.100e-10662.35Type IV pilus biogenesis/stability protein PilW n=... [more]
A0A536YB67_9PROT4.440e-10561.57Type IV pilus biogenesis/stability protein PilW n=... [more]
A0A537E215_9PROT1.030e-10362.00Type IV pilus biogenesis/stability protein PilW n=... [more]
A0A177QZS3_9PROT1.460e-10359.60Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21331contigP-wetherbeei_contig21331:140..1174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog640081.Dsui_3144
Preferred namepilF
PFAMsTPR_16,TPR_2,TPR_8
Model size1035
Max annot lvl206389|Rhodocyclales
KEGG koko:K02656
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.65e-82
EggNOG OGsCOG3063@1|root,COG3063@2|Bacteria,1MXPC@1224|Proteobacteria,2VNC8@28216|Betaproteobacteria,2KW79@206389|Rhodocyclales
Descriptiontype 4 pilus biogenesis protein
Cds size1035
COG categoryNU
BRITEko00000,ko02035,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186222.31519-CDS-P-wetherbeei_contig21331:139..11741683186222.31519-CDS-P-wetherbeei_contig21331:139..1174Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21331 140..1174 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21331.1.1prot_P-wetherbeei_contig21331.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21331 140..1174 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21331.1.1

>prot_P-wetherbeei_contig21331.1.1 ID=prot_P-wetherbeei_contig21331.1.1|Name=mRNA_P-wetherbeei_contig21331.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=345bp
PDPVQPVPRIRVRALGRRTHPPVRGDPPARRAHRDHAQDPRRVDRRGLRP
AGRRGRRPHPPYARKEAHQRASQGGSRMKGSRLKCLLPLLFAALVAGCAG
GGSSPTEPELSQSQADITQTGDARNRARTNTELAALYYERGNLGVALEVL
RTATGADPSYAPAHGMLGIVYMDLRENVLAQQSFERALRYAPNDPDINHN
YGWFLCQTGKEAESTRYFLQAVRNPLYATPAKSYSSAGQCALRKDNLKDA
ADFFGRALKLEPDEPNALLMLAGIQYRSGQMEEARKLISRYGRVVEPNAE
GLWLAIRIERKVGDRAAENSYANQLRRRFPSSREYQQMQRGDYD*
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mRNA from alignment at P-wetherbeei_contig21331:140..1174-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21331.1.1 ID=mRNA_P-wetherbeei_contig21331.1.1|Name=mRNA_P-wetherbeei_contig21331.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1035bp|location=Sequence derived from alignment at P-wetherbeei_contig21331:140..1174- (Phaeothamnion wetherbeei SAG_119_79)
CCTGATCCCGTTCAACCCGTTCCCCGGATCCGGGTTCGGGCGCTCGGGCG CCGAACGCATCCGCCGGTTCGCGGAGATCCTCCAGCGCGCCGGGCTCACC GTGACCACGCGCAGGACCCGCGGCGAGTCGATCGACGCGGCCTGCGGCCA GCTGGCCGGCGAGGTCGCCGACCGCACCCGCCGTACGCTCGGAAAGAAGC TCATCAACGTGCCAGTCAAGGAGGTTCGCGCATGAAGGGTTCGCGTCTCA AGTGCCTGCTGCCGCTGCTCTTCGCCGCGCTGGTCGCCGGGTGTGCGGGC GGGGGTTCCTCCCCCACGGAGCCCGAGCTCAGTCAGTCGCAGGCCGACAT CACCCAGACCGGCGACGCCCGCAACCGGGCGCGGACCAATACCGAGCTGG CGGCGCTGTATTACGAGCGCGGCAACCTCGGCGTGGCGCTTGAAGTGCTG CGCACGGCGACCGGCGCGGACCCGAGCTATGCACCGGCCCACGGAATGCT GGGCATCGTCTACATGGACCTGCGCGAGAACGTGCTCGCGCAGCAGAGTT TCGAGCGTGCGCTGCGCTATGCGCCCAACGACCCGGACATCAACCACAAC TACGGCTGGTTCCTGTGCCAGACCGGCAAGGAAGCGGAGTCGACGCGCTA TTTCCTGCAGGCGGTCCGCAACCCGCTGTACGCGACGCCCGCCAAATCGT ATTCGTCCGCGGGCCAGTGCGCCCTGCGGAAGGACAACCTCAAGGACGCG GCGGATTTCTTCGGCCGCGCCCTCAAGCTCGAGCCCGATGAACCGAACGC GCTGCTGATGCTCGCCGGCATCCAGTACCGGAGCGGGCAGATGGAAGAGG CGCGCAAGCTCATCAGCCGCTACGGGCGCGTCGTTGAGCCCAACGCCGAA GGCCTGTGGCTGGCGATCCGCATCGAGCGCAAGGTCGGCGACCGGGCCGC CGAGAACAGCTACGCGAACCAGCTCCGCCGGCGCTTCCCGAGCTCGCGGG AGTACCAGCAGATGCAGCGCGGGGACTATGACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21331:140..1174-

>mRNA_P-wetherbeei_contig21331.1.1 ID=mRNA_P-wetherbeei_contig21331.1.1|Name=mRNA_P-wetherbeei_contig21331.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1035bp|location=Sequence derived from alignment at P-wetherbeei_contig21331:140..1174- (Phaeothamnion wetherbeei SAG_119_79)
CCTGATCCCGTTCAACCCGTTCCCCGGATCCGGGTTCGGGCGCTCGGGCG
CCGAACGCATCCGCCGGTTCGCGGAGATCCTCCAGCGCGCCGGGCTCACC
GTGACCACGCGCAGGACCCGCGGCGAGTCGATCGACGCGGCCTGCGGCCA
GCTGGCCGGCGAGGTCGCCGACCGCACCCGCCGTACGCTCGGAAAGAAGC
TCATCAACGTGCCAGTCAAGGAGGTTCGCGCATGAAGGGTTCGCGTCTCA
AGTGCCTGCTGCCGCTGCTCTTCGCCGCGCTGGTCGCCGGGTGTGCGGGC
GGGGGTTCCTCCCCCACGGAGCCCGAGCTCAGTCAGTCGCAGGCCGACAT
CACCCAGACCGGCGACGCCCGCAACCGGGCGCGGACCAATACCGAGCTGG
CGGCGCTGTATTACGAGCGCGGCAACCTCGGCGTGGCGCTTGAAGTGCTG
CGCACGGCGACCGGCGCGGACCCGAGCTATGCACCGGCCCACGGAATGCT
GGGCATCGTCTACATGGACCTGCGCGAGAACGTGCTCGCGCAGCAGAGTT
TCGAGCGTGCGCTGCGCTATGCGCCCAACGACCCGGACATCAACCACAAC
TACGGCTGGTTCCTGTGCCAGACCGGCAAGGAAGCGGAGTCGACGCGCTA
TTTCCTGCAGGCGGTCCGCAACCCGCTGTACGCGACGCCCGCCAAATCGT
ATTCGTCCGCGGGCCAGTGCGCCCTGCGGAAGGACAACCTCAAGGACGCG
GCGGATTTCTTCGGCCGCGCCCTCAAGCTCGAGCCCGATGAACCGAACGC
GCTGCTGATGCTCGCCGGCATCCAGTACCGGAGCGGGCAGATGGAAGAGG
CGCGCAAGCTCATCAGCCGCTACGGGCGCGTCGTTGAGCCCAACGCCGAA
GGCCTGTGGCTGGCGATCCGCATCGAGCGCAAGGTCGGCGACCGGGCCGC
CGAGAACAGCTACGCGAACCAGCTCCGCCGGCGCTTCCCGAGCTCGCGGG
AGTACCAGCAGATGCAGCGCGGGGACTATGACTGA
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