mRNA_P-wetherbeei_contig21328.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21328.1.1
Unique NamemRNA_P-wetherbeei_contig21328.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig21328.1.1 vs. uniprot
Match: A0A835ZFQ8_9STRA (U-box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFQ8_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.430e-26
Identity = 50/87 (57.47%), Postives = 69/87 (79.31%), Query Frame = 1
Query:    1 MLASLRAAGVDVPPEFICPLSQEIMEDPVLLSGDGRVYERASAAEWLTNSTFSPSTGLPLGACSFLASHHALRRQIAAFVSDHAAVL 261
            ++  LRAAGV VP EF+CPL+ ++M +PVLL+GD R Y+  + A+WL +++ SPSTG PLGACSF+   HALR++IAAFV +HA+VL
Sbjct:  204 VVTKLRAAGVAVPSEFVCPLTGDVMREPVLLTGDQRHYDSKACAKWLISNSVSPSTGEPLGACSFMVPAHALRQRIAAFVEEHASVL 290          
BLAST of mRNA_P-wetherbeei_contig21328.1.1 vs. uniprot
Match: A0A835Z8R9_9STRA (U-box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8R9_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 5.890e-23
Identity = 45/87 (51.72%), Postives = 65/87 (74.71%), Query Frame = 1
Query:    1 MLASLRAAGVDVPPEFICPLSQEIMEDPVLLSGDGRVYERASAAEWLTNSTFSPSTGLPLGACSFLASHHALRRQIAAFVSDHAAVL 261
            ++A LRAAGV VPPEF+C L+ ++M DPVLL+GDGR YE ++ A WL +   SP+T   L AC+F+A  HAL+++I AF+ +H+ +L
Sbjct:  195 LVARLRAAGVKVPPEFVCALTNDVMRDPVLLTGDGRHYESSACARWLVSHNTSPTTHAQLPACNFMARAHALKQRIWAFLDEHSDIL 281          
BLAST of mRNA_P-wetherbeei_contig21328.1.1 vs. uniprot
Match: A0A7S1I388_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1I388_9EUGL)

HSP 1 Score: 64.7 bits (156), Expect = 2.410e-11
Identity = 36/77 (46.75%), Postives = 45/77 (58.44%), Query Frame = 1
Query:   28 VDVPPEFICPLSQEIMEDPVLLSGDGRVYERASAAEWLTNSTFSPSTGLPLGACSFLASHHALRRQIAAFVSDHAAV 258
            +DVPP+F+CPLS EIM+DPV+   DG  YERA   EWL     SP TGL +     L  +  LR  I  F+  + AV
Sbjct:    7 MDVPPDFLCPLSLEIMQDPVVTE-DGHSYERAKIEEWLRYRRTSPMTGLAIANPETLTPNITLRTSIQDFMEKNRAV 82          
BLAST of mRNA_P-wetherbeei_contig21328.1.1 vs. uniprot
Match: A0A7S4U8E3_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4U8E3_GUITH)

HSP 1 Score: 63.5 bits (153), Expect = 3.830e-11
Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = 1
Query:   13 LRAAGVDVPPEFICPLSQEIMEDPVLLSGDGRVYERASAAEWLTNSTFSPSTGLPLGACSFLASHHALRRQIAAFVSDH 249
            L   G+ +PPE +CP+S +IM+DPV+ S DG  YER +   W+     SP T   L     L  +HALR  I +F+ ++
Sbjct:   28 LLPEGLSIPPEMLCPISSDIMKDPVICS-DGHTYEREAITRWVKRKATSPMTNQSLQEPVMLIPNHALRSLIQSFIENN 105          
BLAST of mRNA_P-wetherbeei_contig21328.1.1 vs. uniprot
Match: A0A2V0PQL2_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PQL2_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 9.380e-11
Identity = 40/86 (46.51%), Postives = 53/86 (61.63%), Query Frame = 1
Query:    4 LASLRAAG---VDVPPE-FICPLSQEIMEDPVLLSGDGRVYERASAAEWLTNSTFSPSTGLPLGACSFLASHHALRRQIAAFVSDH 249
            LASL A G   +D PP  F+CP++QE+MEDPV  S DG  YER + A W+ N   SP T LPL A + L  ++ALR  +  ++  H
Sbjct:  773 LASLGAGGSAALDEPPSMFVCPITQEVMEDPVFAS-DGFTYERDAIAGWIANHNTSPMTNLPL-AHAGLTPNNALRSSVREWLDQH 856          
BLAST of mRNA_P-wetherbeei_contig21328.1.1 vs. uniprot
Match: R1DRS3_EMIHU (U-box domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DRS3_EMIHU)

HSP 1 Score: 61.2 bits (147), Expect = 2.870e-10
Identity = 32/73 (43.84%), Postives = 45/73 (61.64%), Query Frame = 1
Query:   37 PPEFICPLSQEIMEDPVLLSGDGRVYERASAAEWLTNSTFSPSTGLPLGACSFLASHHALRRQIAAFVSDHAA 255
            P +FICP++ E+M DPV+ + DG  YER++   WL   + SP TG  L   + LA+HH LRR I  +   H+A
Sbjct:   34 PADFICPITTEVMSDPVM-AADGHAYERSAIERWLATKSTSPMTGEELQH-TCLANHHMLRRMIREWGETHSA 104          
BLAST of mRNA_P-wetherbeei_contig21328.1.1 vs. uniprot
Match: R1CYM4_EMIHU (U-box domain-containing protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CYM4_EMIHU)

HSP 1 Score: 61.6 bits (148), Expect = 3.650e-10
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   25 GVDVPPE-FICPLSQEIMEDPVLLSGDGRVYERASAAEWLTNSTFSPSTGLPLGACSFLASHHALRRQIAAFVSDHAA 255
            G + PP+ FICP++ E+M DPV+ + DG  YER++   WL   + SP TG  L   + LA+HH LRR I  +   H+A
Sbjct:   55 GEEEPPDDFICPITTEVMSDPVM-AADGHAYERSAIERWLATKSTSPMTGEELQH-TCLANHHMLRRMIREWGETHSA 130          
BLAST of mRNA_P-wetherbeei_contig21328.1.1 vs. uniprot
Match: A0A7S0YUT2_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YUT2_9CRYP)

HSP 1 Score: 61.2 bits (147), Expect = 4.420e-10
Identity = 37/84 (44.05%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   10 SLRAA----GVDVPPEFICPLSQEIMEDPVLLSGDGRVYERASAAEWLTNSTFSPSTGLPLGACSFLASHHALRRQIAAFVSDH 249
            +LR+A    G+ VP  F+CP+S E+M DPV+L+ DG VYER +   WL +   SP T   + A   L   HALR  I  FV  H
Sbjct:   25 NLRSAFEERGIPVPDAFLCPISMEVMSDPVILT-DGHVYERKTIERWLLSHDTSPKTNQVV-ATDQLIPCHALRTVIQDFVETH 106          
BLAST of mRNA_P-wetherbeei_contig21328.1.1 vs. uniprot
Match: R1BAW1_EMIHU (U-box domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BAW1_EMIHU)

HSP 1 Score: 61.6 bits (148), Expect = 4.490e-10
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 1
Query:   37 PPEFICPLSQEIMEDPVLLSGDGRVYERASAAEWLTNSTFSPSTGLPLGACSFLASHHALRRQI 228
            P +FICP++ E+M DPV+ + DG  YER++   WL   + SP TG  L   SFLA +H LRRQI
Sbjct:   73 PADFICPITTELMSDPVM-AADGHSYERSAIKRWLATKSTSPMTGEAL-VHSFLAPNHTLRRQI 134          
BLAST of mRNA_P-wetherbeei_contig21328.1.1 vs. uniprot
Match: R1D1Q3_EMIHU (U-box domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D1Q3_EMIHU)

HSP 1 Score: 61.6 bits (148), Expect = 5.480e-10
Identity = 36/87 (41.38%), Postives = 51/87 (58.62%), Query Frame = 1
Query:    4 LASLRAAGVDV---PPEFICPLSQEIMEDPVLLSGDGRVYERASAAEWLTNSTFSPSTGLPLGACSFLASHHALRRQIAAFVSDHAA 255
            LA+ R   V+    P +FICP++ E+M DPV+ + DG  YER++   WL   + SP TG  L   + LA+HH LRR I  +   H+A
Sbjct:   63 LAAERPPSVEEEEPPADFICPITTEVMSDPVM-AADGHAYERSAIERWLATKSTSPMTGEELQH-TCLANHHMLRRMIREWGETHSA 147          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21328.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZFQ8_9STRA1.430e-2657.47U-box domain-containing protein n=1 Tax=Tribonema ... [more]
A0A835Z8R9_9STRA5.890e-2351.72U-box domain-containing protein n=1 Tax=Tribonema ... [more]
A0A7S1I388_9EUGL2.410e-1146.75Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S4U8E3_GUITH3.830e-1139.24Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A2V0PQL2_9CHLO9.380e-1146.51Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
R1DRS3_EMIHU2.870e-1043.84U-box domain-containing protein n=1 Tax=Emiliania ... [more]
R1CYM4_EMIHU3.650e-1043.59U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A7S0YUT2_9CRYP4.420e-1044.05Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
R1BAW1_EMIHU4.490e-1050.00U-box domain-containing protein n=1 Tax=Emiliania ... [more]
R1D1Q3_EMIHU5.480e-1041.38U-box domain-containing protein n=1 Tax=Emiliania ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21328contigP-wetherbeei_contig21328:124..581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog3218.PP1S323_58V6.1
PFAMsU-box
Model size261
Max annot lvl33090|Viridiplantae
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.51e-10
EggNOG OGsKOG0167@1|root,KOG0167@2759|Eukaryota,37I20@33090|Viridiplantae,3GAWQ@35493|Streptophyta
DescriptionRING-type E3 ubiquitin transferase
Cds size261
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186222.1792784-CDS-P-wetherbeei_contig21328:123..1891683186222.1792784-CDS-P-wetherbeei_contig21328:123..189Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21328 124..189 +
1683186222.1903095-CDS-P-wetherbeei_contig21328:386..5811683186222.1903095-CDS-P-wetherbeei_contig21328:386..581Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21328 387..581 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21328.1.1prot_P-wetherbeei_contig21328.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21328 124..581 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21328.1.1

>prot_P-wetherbeei_contig21328.1.1 ID=prot_P-wetherbeei_contig21328.1.1|Name=mRNA_P-wetherbeei_contig21328.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=87bp
MLASLRAAGVDVPPEFICPLSQEIMEDPVLLSGDGRVYERASAAEWLTNS
TFSPSTGLPLGACSFLASHHALRRQIAAFVSDHAAVL
back to top

mRNA from alignment at P-wetherbeei_contig21328:124..581+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21328.1.1 ID=mRNA_P-wetherbeei_contig21328.1.1|Name=mRNA_P-wetherbeei_contig21328.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=458bp|location=Sequence derived from alignment at P-wetherbeei_contig21328:124..581+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGCGTCGCTGCGGGCCGCCGGGGTGGACGTGCCTCCGGAATTCAT CTGTCCGCTGTCGCAGGTAAGCAGCGCGAAAGAGTGAAACTGCTACGACA CTGTTTGTCTCGAGGTTTCGACGAGTTCTCTTTTCGGTCTGCCCTTATCC TTCCCGTCCGCCGTGACCGGGCACACAGTTATACGGAATAGAATAAGCGT CAGAATTTAAGCCTATAGGAGCCTCACAATCCTGGCGCCATCATTTTTCC CCTGCCTCCGCAGGAGATCATGGAGGACCCAGTCCTGCTGAGCGGCGACG GCCGCGTCTATGAGCGCGCGAGCGCGGCGGAGTGGCTGACCAACAGTACC TTTTCGCCATCCACAGGGCTGCCGCTCGGCGCCTGCAGCTTCCTGGCGTC GCACCACGCGCTGCGGCGCCAGATCGCCGCCTTCGTATCTGACCACGCCG CTGTGCTG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig21328:124..581+

>mRNA_P-wetherbeei_contig21328.1.1 ID=mRNA_P-wetherbeei_contig21328.1.1|Name=mRNA_P-wetherbeei_contig21328.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig21328:124..581+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGCGTCGCTGCGGGCCGCCGGGGTGGACGTGCCTCCGGAATTCAT
CTGTCCGCTGTCGCAGGAGATCATGGAGGACCCAGTCCTGCTGAGCGGCG
ACGGCCGCGTCTATGAGCGCGCGAGCGCGGCGGAGTGGCTGACCAACAGT
ACCTTTTCGCCATCCACAGGGCTGCCGCTCGGCGCCTGCAGCTTCCTGGC
GTCGCACCACGCGCTGCGGCGCCAGATCGCCGCCTTCGTATCTGACCACG
CCGCTGTGCTG
back to top