mRNA_P-wetherbeei_contig21306.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21306.1.1
Unique NamemRNA_P-wetherbeei_contig21306.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig21306.1.1 vs. uniprot
Match: A0A2S8FM34_9BACT (Uncharacterized protein n=2 Tax=Pirellulaceae TaxID=2691357 RepID=A0A2S8FM34_9BACT)

HSP 1 Score: 115 bits (287), Expect = 1.740e-29
Identity = 63/157 (40.13%), Postives = 94/157 (59.87%), Query Frame = 1
Query:   19 VWALVIVAVVAGLLLALRRRPAP-PAVPEDPNAFMPLLADEAVLRARTEFGVALDFGPDSVASVEEALDKLHARRAAGAMTDGRLNREAMTWGAYVGEVIRRLKGGRWAKDHHAAGPDSYPIDY-DGHQSFPVGWCGRRILNGAEDSVLHKFRFLVL 483
            ++  + VA+V G     R++ A  P   +D  A M   A  AV  A++E+GV LDF PDS+ S+E  L+++H   AA ++++  L R A+ WG Y+GEVI++++   W  +    G  S PI Y D  +SFPV WC +RI+NG ED+V  KF  LV+
Sbjct:    1 MFVTIAVALVIGYWFLRRQQNADRPLTDQDAIAEMQSRAQRAVADAKSEYGVDLDFSPDSIQSLESILEQVHQSHAANSISETELTRHALKWGGYLGEVIKQVQTAEWKLNSQINGEGSLPIVYEDESESFPVAWCHKRIVNGDEDNVWTKFTILVV 157          
BLAST of mRNA_P-wetherbeei_contig21306.1.1 vs. uniprot
Match: A0A517ZM93_9PLAN (Uncharacterized protein n=3 Tax=Symmachiella dynata TaxID=2527995 RepID=A0A517ZM93_9PLAN)

HSP 1 Score: 110 bits (274), Expect = 2.740e-27
Identity = 60/160 (37.50%), Postives = 92/160 (57.50%), Query Frame = 1
Query:   19 VWALVIVA--VVAG--LLLALRRRPAPPAVPEDPNAFMPLLADEAVLRARTEFGVALDFGPDSVASVEEALDKLHARRAAGAMTDGRLNREAMTWGAYVGEVIRRLKGGRWAKDHHAAGPDSYPIDY-DGHQSFPVGWCGRRILNGAEDSVLHKFRFLVL 483
            +W  +I+A  ++AG   L   RR       P++  A M   A+ AV  A+ E+ + L+F P+SV  ++E L ++H    +  +    L R ++ WG Y+GEV +R++   W+ D    G   YPI Y D  +SFP+GWC RRI+NG ED+V HKF +LV+
Sbjct:    2 IWPFLIIATLLIAGSWYLRTKRRATESRLTPQEVIAEMRKRAELAVADAKKEYDIDLNFSPESVEDLDEILLQIHESHQSTPLASIELRRHSLKWGGYIGEVSKRIRDCEWSVDSKIGGKGDYPIVYKDRSESFPIGWCLRRIVNGEEDNVWHKFTYLVV 161          
BLAST of mRNA_P-wetherbeei_contig21306.1.1 vs. uniprot
Match: A0A2V8WPW4_9BACT (Uncharacterized protein n=5 Tax=unclassified Acidobacteria TaxID=305072 RepID=A0A2V8WPW4_9BACT)

HSP 1 Score: 101 bits (251), Expect = 5.760e-24
Identity = 51/128 (39.84%), Postives = 76/128 (59.38%), Query Frame = 1
Query:  100 EDPNAFMPLLADEAVLRARTEFGVALDFGPDSVASVEEALDKLHARRAAGAMTDGRLNREAMTWGAYVGEVIRRLKGGRWAKDHHAAGPDSYPIDYDGH--QSFPVGWCGRRILNGAEDSVLHKFRFL 477
            E+ + +M  L+ +AV RA + +GV LD+ PDSV  VE+ L   +  +    MT+  +   A  WGAY+GEV++R+    W +D   AG ++ PI Y+ H  +S+P  W  RR+ NG ED+V  KF FL
Sbjct:   28 ENIDTYMASLSAQAVKRAGSSYGVTLDYSPDSVKEVEKILATKYEMQKTHPMTEIEITDAAHLWGAYIGEVMKRIHPAHWVRDSDVAGENALPIMYEDHSGESYPCAWVYRRLKNGEEDNVWIKFHFL 155          
BLAST of mRNA_P-wetherbeei_contig21306.1.1 vs. uniprot
Match: A0A517TV05_9BACT (Uncharacterized protein n=1 Tax=Lacipirellula limnantheis TaxID=2528024 RepID=A0A517TV05_9BACT)

HSP 1 Score: 92.4 bits (228), Expect = 3.520e-21
Identity = 57/124 (45.97%), Postives = 74/124 (59.68%), Query Frame = 1
Query:  118 MPLLADEAVLRARTEFGVALDFGPDSVASVEEALDKLHARRAAGAMTDGRLNREAMTWGAYVGEVIRRLK-GGRWAKDHHAAGPDSYPIDYDGHQSFPVGWCGRRILNGAEDSVLHKFRFLVLG 486
            M  LA+EAV  A+ E  V LDF  +S+  VEE L KLH    A    +G +N  A+ +GAYVGE IRR + G  W +D   AGP SYPI +    SFPV  C +R+ +G E++V HKF+ L  G
Sbjct:    1 MAWLAEEAVDMAQNE-NVDLDFSTESIERVEELLAKLHDEYQARGDENG-MNGLALAYGAYVGEAIRRSETGAHWEEDSDIAGPGSYPIYWRDGASFPVACCYKRMSDGPEENVWHKFQVLKQG 122          
BLAST of mRNA_P-wetherbeei_contig21306.1.1 vs. uniprot
Match: A0A2N9NF56_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2N9NF56_9BACT)

HSP 1 Score: 92.4 bits (228), Expect = 1.650e-19
Identity = 47/114 (41.23%), Postives = 69/114 (60.53%), Query Frame = 1
Query:  127 LADEAVLRARTEFGVALDFGPDSVASVEEALDKLHARRAAGAMTDGRLNREAMTWGAYVGEVIRRLKGGRWAKDHHAAGPDSYPIDY-DGHQSFPVGWCGRRILNGAEDSVLHK 465
            LA EA+   + + G+ LD+  DS+  +EE L +L  +    +  +G     A  +GAY+GEV RR  GG WA+DHHAAGP + P++  +G   FP+ WC RR+  G E++V HK
Sbjct:   14 LAGEAIKMVKADRGIDLDYSFDSIKIIEEELARLCGQVDKTSPQEGTYGL-ATAYGAYIGEVFRRRDGGSWARDHHAAGPGTNPLNLANGSTIFPISWCYRRLTVGEEENVYHK 126          
BLAST of mRNA_P-wetherbeei_contig21306.1.1 vs. uniprot
Match: UPI000C9A2891 (hypothetical protein n=1 Tax=Bowmanella denitrificans TaxID=366582 RepID=UPI000C9A2891)

HSP 1 Score: 70.5 bits (171), Expect = 1.640e-12
Identity = 41/123 (33.33%), Postives = 64/123 (52.03%), Query Frame = 1
Query:  100 EDPNAFMPLLADEAVLRARTEFGVALDFGPDSVASVEEALDKLHARRAAGAMTDGRLNREAMTWGAYVGEVIRRLKGGRWAKDHHAAGPDSYPIDYDGHQSFPVGWCGRRILNGAEDSVLHKF 468
            E+ ++ M   A  AVL  R EFG+ LD  P SVA V+ A+ K   + +  A+ +  +      +GAY+GE+ R+L GG W  D+         ++Y GH     G C +R+ N ++ SV + F
Sbjct:    6 EELHSLMSDTAHNAVLTTREEFGIELDHSPQSVALVDVAILKWLEKYSDSALENAAVFTICNLYGAYIGEIFRKLVGGHWHYDNSNPDAPYVVLEYAGHTYAFAGICYQRLANDSQISVKNYF 128          
BLAST of mRNA_P-wetherbeei_contig21306.1.1 vs. uniprot
Match: A0A2E5EKS9_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E5EKS9_9BACT)

HSP 1 Score: 67.4 bits (163), Expect = 5.870e-11
Identity = 40/115 (34.78%), Postives = 61/115 (53.04%), Query Frame = 1
Query:  109 NAFMPLLADEAVLRARTEFGVALDFGPDSVASVEEALDK-LHARRAAGAMTDGRLNREAMTWGAYVGEVIRRLKGGRWAKDHHAAGPDSYPIDYDGH-QSFPVGWCGRRILNGAE 447
            +A M +LA +AV RA+ E+   L +   SV  +EE + K LH       ++   L  E+  WGAY+GEV+RR++ G+W +     G  + P  +    + FP  W  RRI +G E
Sbjct:   39 DAEMKVLAMDAVSRAKEEYRAELTYDRSSVKVLEERILKDLHHNHLIEPLSAETLMSESQLWGAYLGEVLRRIRDGKWREKSSQRGKRAMPFKFSSRGEVFPCDWVLRRIKHGDE 153          
BLAST of mRNA_P-wetherbeei_contig21306.1.1 vs. uniprot
Match: A0A0U3AIY3_9ALTE (Uncharacterized protein n=3 Tax=Lacimicrobium TaxID=1751872 RepID=A0A0U3AIY3_9ALTE)

HSP 1 Score: 65.9 bits (159), Expect = 9.670e-11
Identity = 38/113 (33.63%), Postives = 57/113 (50.44%), Query Frame = 1
Query:  130 ADEAVLRARTEFGVALDFGPDSVASVEEALDKLHARRAAGAMTDGRLNREAMTWGAYVGEVIRRLKGGRWAKDHHAAGPDSYPIDYDGHQSFPVGWCGRRILNGAEDSVLHKF 468
            A  A++  R EFG+ LD   DSVA V+E + K   R    ++ +  +      +GAYVGE+ R+L GG W  D          ++Y GH     G C +R++N ++ SV   F
Sbjct:   16 AHNAIVATREEFGIELDNSVDSVAQVDEVILKWLERYKDKSLENNAVFTLCNLYGAYVGEIFRKLVGGHWHYDQSNPDTPYVVLEYAGHTYAFAGICYQRLVNDSQISVKSYF 128          
BLAST of mRNA_P-wetherbeei_contig21306.1.1 vs. uniprot
Match: UPI0019D3D917 (hypothetical protein n=3 Tax=Bowmanella TaxID=366580 RepID=UPI0019D3D917)

HSP 1 Score: 65.9 bits (159), Expect = 9.670e-11
Identity = 39/113 (34.51%), Postives = 56/113 (49.56%), Query Frame = 1
Query:  130 ADEAVLRARTEFGVALDFGPDSVASVEEALDKLHARRAAGAMTDGRLNREAMTWGAYVGEVIRRLKGGRWAKDHHAAGPDSYPIDYDGHQSFPVGWCGRRILNGAEDSVLHKF 468
            A  AVL  R EFG+ LD  P SVA V+  + K   +    A+ +  +      +GAYVGE+ R+L GG W  D          ++Y GH     G C +R++N ++ SV   F
Sbjct:   16 AHNAVLTTREEFGIELDHSPQSVALVDVVILKWLEKYQESALENNIVFTVCNLYGAYVGEIFRKLVGGSWHYDQSNPEAPYIVLEYAGHTYAFAGICYQRLVNDSQISVKSYF 128          
BLAST of mRNA_P-wetherbeei_contig21306.1.1 vs. uniprot
Match: A0A0P6X876_9CHLR (Uncharacterized protein n=1 Tax=Leptolinea tardivitalis TaxID=229920 RepID=A0A0P6X876_9CHLR)

HSP 1 Score: 68.2 bits (165), Expect = 1.600e-10
Identity = 35/79 (44.30%), Postives = 46/79 (58.23%), Query Frame = 1
Query:  127 LADEAVLRARTEFGVALDFGPDSVASVEEALDKLHARRAAGAMTDGRLNREAMTWGAYVGEVIRRLKGGRWAKDHHAAG 363
            L+ +AV  AR +FG+ALDF   S+  +E  LD  H    AG ++D  L R    WGAY+GE +RR KGG W  D +  G
Sbjct:   15 LSRQAVQFAREKFGLALDFSMTSLPKLERLLDMAHQSYLAGNVSDQGLERSVQVWGAYLGETMRRNKGGVWKIDRNQTG 93          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21306.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A2S8FM34_9BACT1.740e-2940.13Uncharacterized protein n=2 Tax=Pirellulaceae TaxI... [more]
A0A517ZM93_9PLAN2.740e-2737.50Uncharacterized protein n=3 Tax=Symmachiella dynat... [more]
A0A2V8WPW4_9BACT5.760e-2439.84Uncharacterized protein n=5 Tax=unclassified Acido... [more]
A0A517TV05_9BACT3.520e-2145.97Uncharacterized protein n=1 Tax=Lacipirellula limn... [more]
A0A2N9NF56_9BACT1.650e-1941.23Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
UPI000C9A28911.640e-1233.33hypothetical protein n=1 Tax=Bowmanella denitrific... [more]
A0A2E5EKS9_9BACT5.870e-1134.78Uncharacterized protein n=1 Tax=Verrucomicrobiales... [more]
A0A0U3AIY3_9ALTE9.670e-1133.63Uncharacterized protein n=3 Tax=Lacimicrobium TaxI... [more]
UPI0019D3D9179.670e-1134.51hypothetical protein n=3 Tax=Bowmanella TaxID=3665... [more]
A0A0P6X876_9CHLR1.600e-1044.30Uncharacterized protein n=1 Tax=Leptolinea tardivi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21306contigP-wetherbeei_contig21306:689..1174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1085623.GNIT_2044
Model size486
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.16e-10
EggNOG OGs2BYD5@1|root,32R34@2|Bacteria,1RGXN@1224|Proteobacteria,1S78P@1236|Gammaproteobacteria,467EA@72275|Alteromonadaceae
Cds size486
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186221.3713171-CDS-P-wetherbeei_contig21306:688..11741683186221.3713171-CDS-P-wetherbeei_contig21306:688..1174Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21306 689..1174 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21306.1.1prot_P-wetherbeei_contig21306.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21306 689..1174 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21306.1.1

>prot_P-wetherbeei_contig21306.1.1 ID=prot_P-wetherbeei_contig21306.1.1|Name=mRNA_P-wetherbeei_contig21306.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=162bp
MGDGRWVWALVIVAVVAGLLLALRRRPAPPAVPEDPNAFMPLLADEAVLR
ARTEFGVALDFGPDSVASVEEALDKLHARRAAGAMTDGRLNREAMTWGAY
VGEVIRRLKGGRWAKDHHAAGPDSYPIDYDGHQSFPVGWCGRRILNGAED
SVLHKFRFLVLG
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mRNA from alignment at P-wetherbeei_contig21306:689..1174+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21306.1.1 ID=mRNA_P-wetherbeei_contig21306.1.1|Name=mRNA_P-wetherbeei_contig21306.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig21306:689..1174+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGGATGGCCGCTGGGTGTGGGCACTCGTAATCGTGGCGGTGGTCGC GGGGCTGCTCCTGGCGCTCCGCCGGAGGCCGGCGCCGCCCGCCGTCCCCG AAGACCCGAACGCCTTCATGCCGCTGCTCGCGGACGAGGCCGTCCTGCGT GCCCGCACGGAGTTCGGTGTCGCTCTCGATTTCGGCCCCGATTCGGTCGC CTCTGTCGAAGAGGCGTTGGACAAACTGCACGCGCGCCGTGCGGCCGGCG CGATGACCGATGGCCGACTCAACCGGGAGGCGATGACCTGGGGGGCGTAC GTCGGGGAGGTGATCCGGCGGCTCAAGGGCGGTCGGTGGGCGAAGGACCA TCACGCGGCCGGCCCGGACAGCTACCCGATCGACTATGACGGGCACCAGT CGTTCCCGGTCGGGTGGTGCGGCCGCCGCATCCTCAATGGGGCCGAGGAC AGCGTGTTACACAAGTTCCGGTTCCTGGTGCTGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21306:689..1174+

>mRNA_P-wetherbeei_contig21306.1.1 ID=mRNA_P-wetherbeei_contig21306.1.1|Name=mRNA_P-wetherbeei_contig21306.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig21306:689..1174+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGGATGGCCGCTGGGTGTGGGCACTCGTAATCGTGGCGGTGGTCGC
GGGGCTGCTCCTGGCGCTCCGCCGGAGGCCGGCGCCGCCCGCCGTCCCCG
AAGACCCGAACGCCTTCATGCCGCTGCTCGCGGACGAGGCCGTCCTGCGT
GCCCGCACGGAGTTCGGTGTCGCTCTCGATTTCGGCCCCGATTCGGTCGC
CTCTGTCGAAGAGGCGTTGGACAAACTGCACGCGCGCCGTGCGGCCGGCG
CGATGACCGATGGCCGACTCAACCGGGAGGCGATGACCTGGGGGGCGTAC
GTCGGGGAGGTGATCCGGCGGCTCAAGGGCGGTCGGTGGGCGAAGGACCA
TCACGCGGCCGGCCCGGACAGCTACCCGATCGACTATGACGGGCACCAGT
CGTTCCCGGTCGGGTGGTGCGGCCGCCGCATCCTCAATGGGGCCGAGGAC
AGCGTGTTACACAAGTTCCGGTTCCTGGTGCTGGGC
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