mRNA_P-wetherbeei_contig213.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig213.2.1
Unique NamemRNA_P-wetherbeei_contig213.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig213.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig213contigP-wetherbeei_contig213:1014..4311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2740
Hectar predicted targeting categoryother localisation
Exons3
Cds size2082
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186221.0353515-UTR-P-wetherbeei_contig213:1013..13651683186221.0353515-UTR-P-wetherbeei_contig213:1013..1365Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig213 1014..1365 +
1683186221.0739903-UTR-P-wetherbeei_contig213:4005..43111683186221.0739903-UTR-P-wetherbeei_contig213:4005..4311Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig213 4006..4311 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186221.0452056-CDS-P-wetherbeei_contig213:1365..20411683186221.0452056-CDS-P-wetherbeei_contig213:1365..2041Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig213 1366..2041 +
1683186221.057117-CDS-P-wetherbeei_contig213:2410..32001683186221.057117-CDS-P-wetherbeei_contig213:2410..3200Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig213 2411..3200 +
1683186221.06522-CDS-P-wetherbeei_contig213:3389..40051683186221.06522-CDS-P-wetherbeei_contig213:3389..4005Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig213 3390..4005 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig213.2.1prot_P-wetherbeei_contig213.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig213 1366..4005 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig213.2.1

>prot_P-wetherbeei_contig213.2.1 ID=prot_P-wetherbeei_contig213.2.1|Name=mRNA_P-wetherbeei_contig213.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=694bp
MPRRGRGLISIPNIPGIPNIPNVPNIPGVDIPSTDAILDQLVGACDSAGG
NYSSTYVAPTFNPTPYIESMHNVPRWSGDRVWNIHVPAYNRGIVAAGVTI
AVAGAVLTLLLGLSLIYMQKRGGCGVRRPEPKTAAAKQPTKGAAAVAATA
GDGGDGGGVGYDDGGGAVATNTAIAAAHTNAPREAQESRRIWWLFVGCGI
CTLVALACMIYGLWESNYEVDGVVDQANHIADTVNATDTTLEQAIDVAHD
AFINAAKVLAYGTIGCSGVLGTAADAVVNAATDKADSLQSDWQAKRQKLL
GGTASDIYNIADIIASTKDARYATIGVLTIVSFLGTLLLALHVTSTVRQA
KDQPDVPGTAASMAASASAAGGGVGGLSHSIAPVAEPGTGIGGGGGGGGS
GDGDGGSIDFGGSTAAVSSGSRRKKPRSATRIFGRGTTCVAVTLLFTTCV
ILSAAFMSAIFAADYCIEPTELSINAFTSDSELTQEAVSYYTQCNGTDSG
PIGTLLLTISCYADEMGGVVSDFDAGNLPNNCAAEANSSTLLKEDLLELS
SLIAYATELSSCANVNPLFVELSFDTTCTDVIKFSLWVWLGGVFYFCLLM
AYLFLGRAIVLRTRQEIKTARKTAAAVAAAAAAGAAAAAVAVGQREVGKD
GEEKSWNDLEGGASVAAHSAELPEAAPVALAGFATVAESHPTE*
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mRNA from alignment at P-wetherbeei_contig213:1014..4311+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig213.2.1 ID=mRNA_P-wetherbeei_contig213.2.1|Name=mRNA_P-wetherbeei_contig213.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3298bp|location=Sequence derived from alignment at P-wetherbeei_contig213:1014..4311+ (Phaeothamnion wetherbeei SAG_119_79)
CTTTCTCCAGAGGGAAGAGAAATATCACCCCATTTCGTCACCACACGAGC
AGAGAGCTTCTCTTCACCCGACCGGCGAAGAAGTTCAGGTGGAAAAGGGG
GGAGTGATCCTTCGATTGCCCTCGGAGGCTTCTGACTTTATGCCCGTAGG
CAACGAACGTCTCTCATGCATGTTTCTTTTCAAGACATTGGTGTAAATTC
ACGTTACTTCTACTGCGGTACCGTAATTAATCGTGGTTTCGAAGTTCAAC
TTTGCTATTTAGTGCACTTTCTTTCACGTTCTCTTCAAAGAAGCACCTCC
CGTCACCCCCTTGTCCCCTTTCCTCCTCTTCTCATCACAGCAAGAGGAGG
ACATGCCGCGACGAGGGCGAGGGCTCATCTCGATCCCCAACATCCCTGGC
ATCCCCAACATTCCTAACGTACCCAATATTCCCGGCGTCGACATCCCCTC
AACGGACGCGATCCTCGACCAGCTCGTCGGTGCCTGCGACAGCGCCGGCG
GGAACTACTCGTCTACGTATGTTGCCCCAACGTTCAACCCAACACCGTAT
ATCGAATCCATGCATAACGTCCCGCGGTGGTCCGGCGATCGGGTCTGGAA
CATTCACGTCCCCGCGTATAACCGCGGGATCGTCGCAGCCGGGGTGACCA
TCGCTGTCGCCGGCGCGGTGTTGACGCTGCTGCTGGGGCTATCGCTGATT
TACATGCAGAAGCGCGGCGGCTGCGGCGTGCGGCGGCCCGAGCCGAAGAC
GGCGGCGGCAAAGCAGCCGACGAAGGGCGCGGCAGCAGTAGCGGCGACGG
CCGGCGACGGTGGCGACGGCGGTGGCGTTGGATACGACGACGGCGGCGGA
GCTGTTGCCACCAACACCGCCATTGCCGCTGCTCACACCAATGCCCCCCG
CGAAGCGCAAGAGTCGCGGCGCATCTGGTGGCTCTTTGTGGGTTGTGGGA
TTTGTACCTTGGTGGCGCTGGCGTGCATGATCTATGGGCTCTGGGAGTCC
AACTACGAAGTTGACGGTGTCGTGGACCGTGAGTCATGCTTCCATTCTCG
TCAATTTTGGGAATTTCTGGTTCTTGCTTTTGTTTCCCTCCTCGATTTCA
TGATGCTTGGCAAGATTGCACTCGCGTTTTGGTTGATCTTGGGGGGCGAG
GGGGATGACATCCTTGAAGGCACACACTTGTTTGCAGCGTCCTCTCACGC
TGCTTGGAAGTTGTGGGTGCGTCTTTTTTATCGCCTTTCAGGACCTCAAA
GACTATTTAAAAAAGCGCCATCAGATTGCGGCTTGCCTTCTCCGTTTTTA
ACAACGTTAGCCGCGTTTCGCTACTAACGGATGATCATCAGAGTTCAAGC
ATCAAACGCTGCTACCCGTACTTCTGTCTCTTTTTTCGTGAATCCAGAGG
CAAACCACATCGCCGACACGGTCAACGCGACCGACACGACCTTGGAGCAG
GCCATCGACGTTGCACACGATGCGTTCATCAACGCTGCCAAGGTACTCGC
TTACGGAACCATTGGCTGCAGCGGCGTCCTCGGCACGGCCGCCGACGCCG
TCGTTAATGCCGCGACGGACAAGGCGGACTCTCTGCAGTCCGACTGGCAG
GCGAAGCGCCAAAAGCTGCTGGGTGGAACTGCTAGTGACATTTACAACAT
TGCCGATATCATCGCGAGCACCAAGGATGCTCGCTACGCTACCATCGGCG
TCCTGACCATCGTGAGCTTCCTCGGCACGCTGCTGCTGGCGCTCCACGTC
ACATCGACGGTCCGCCAAGCCAAGGATCAGCCGGATGTTCCGGGTACAGC
GGCGTCAATGGCAGCGTCGGCTTCGGCGGCGGGTGGCGGCGTCGGCGGTC
TCTCGCATAGCATCGCACCTGTTGCGGAGCCTGGCACTGGCATCGGCGGC
GGCGGCGGTGGCGGCGGCAGCGGCGATGGTGATGGCGGCAGCATCGATTT
TGGTGGCAGCACCGCCGCCGTGAGCAGCGGCAGCCGCCGCAAGAAGCCGA
GGAGCGCGACCCGGATCTTTGGGCGCGGCACTACGTGTGTTGCGGTAACC
CTGCTCTTTACCACTTGCGTTATTCTCTCAGCAGCCTTCATGTCGGCAAT
CTTCGCCGCCGATTATTGCATCGAGCCGACGGAGCTCTCGATCAACGCCT
TCACTTCGGACAGCGAGCTGACGCAAGAAGCCGTAAGGTAAGCCGTGACG
GAAGCTGACTGATTGAAACATGGGGTCTTCCGTGTTCTACATTTGCCTGT
CGTTTCCACCAGTGACAGTCTGCGTAAAATGACACCGTGCGCATGCTGTC
TTTGTCTGTTTGCTTTTCATGAAGTGACCAGTGCGCGTGCTGCCCCCGTT
CGTTGCCACTTGCCTGCTGTTTGCAGCTATTATACCCAATGCAACGGCAC
CGACTCCGGGCCCATCGGCACGCTGCTCCTGACTATTTCGTGCTACGCGG
ACGAAATGGGCGGCGTCGTTTCGGACTTCGACGCGGGAAACCTGCCGAAC
AACTGCGCCGCTGAGGCCAACAGTAGCACGCTGCTGAAGGAGGATTTGTT
GGAGCTATCGTCACTCATTGCCTACGCCACGGAGCTGTCGTCGTGCGCCA
ACGTGAATCCCCTGTTTGTAGAGCTGTCGTTCGACACGACGTGCACGGAC
GTCATCAAGTTTTCGCTGTGGGTGTGGCTCGGCGGCGTCTTCTACTTCTG
CCTCCTGATGGCTTACCTGTTTCTAGGACGTGCCATCGTGCTGCGAACGC
GCCAAGAGATCAAGACCGCGAGAAAGACGGCGGCGGCGGTGGCAGCGGCA
GCCGCGGCGGGGGCGGCGGCCGCCGCGGTGGCAGTGGGGCAAAGAGAGGT
TGGAAAGGATGGGGAGGAAAAGTCTTGGAACGATTTGGAAGGAGGAGCGT
CTGTAGCAGCCCATTCTGCTGAGCTTCCCGAGGCTGCGCCAGTGGCGTTA
GCGGGCTTTGCGACGGTGGCAGAGAGCCACCCGACAGAATAGCTAGTGGC
TAGGCAATAATGCACGTCCGAGGGGCGTCGCCCTATATTGTAAAGTGTCC
CGAGGCTGGGACGCGGCGACGTGTAGGTTCAGGCGCCGAGAGCATGGGCG
CGTTTCTTCGTTCTTGAGGCTTCCAACCTGTGTAGATCTGGGCCGTGCAG
GCACCGCTGCCCGTTCTTCGGTAATAAGCGTTACCCCGAAGAGCTCGTTC
TCCTGGCGCAGCCACCCCGTTCGGCATCAACCCCCGCCGTTTTCGCGCCT
GTGTCATTCACGATGCTCCAAGCGCGCCTCCCTCCTAATATTGCAGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig213:1014..4311+

>mRNA_P-wetherbeei_contig213.2.1 ID=mRNA_P-wetherbeei_contig213.2.1|Name=mRNA_P-wetherbeei_contig213.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2082bp|location=Sequence derived from alignment at P-wetherbeei_contig213:1014..4311+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCGACGAGGGCGAGGGCTCATCTCGATCCCCAACATCCCTGGCAT
CCCCAACATTCCTAACGTACCCAATATTCCCGGCGTCGACATCCCCTCAA
CGGACGCGATCCTCGACCAGCTCGTCGGTGCCTGCGACAGCGCCGGCGGG
AACTACTCGTCTACGTATGTTGCCCCAACGTTCAACCCAACACCGTATAT
CGAATCCATGCATAACGTCCCGCGGTGGTCCGGCGATCGGGTCTGGAACA
TTCACGTCCCCGCGTATAACCGCGGGATCGTCGCAGCCGGGGTGACCATC
GCTGTCGCCGGCGCGGTGTTGACGCTGCTGCTGGGGCTATCGCTGATTTA
CATGCAGAAGCGCGGCGGCTGCGGCGTGCGGCGGCCCGAGCCGAAGACGG
CGGCGGCAAAGCAGCCGACGAAGGGCGCGGCAGCAGTAGCGGCGACGGCC
GGCGACGGTGGCGACGGCGGTGGCGTTGGATACGACGACGGCGGCGGAGC
TGTTGCCACCAACACCGCCATTGCCGCTGCTCACACCAATGCCCCCCGCG
AAGCGCAAGAGTCGCGGCGCATCTGGTGGCTCTTTGTGGGTTGTGGGATT
TGTACCTTGGTGGCGCTGGCGTGCATGATCTATGGGCTCTGGGAGTCCAA
CTACGAAGTTGACGGTGTCGTGGACCAGGCAAACCACATCGCCGACACGG
TCAACGCGACCGACACGACCTTGGAGCAGGCCATCGACGTTGCACACGAT
GCGTTCATCAACGCTGCCAAGGTACTCGCTTACGGAACCATTGGCTGCAG
CGGCGTCCTCGGCACGGCCGCCGACGCCGTCGTTAATGCCGCGACGGACA
AGGCGGACTCTCTGCAGTCCGACTGGCAGGCGAAGCGCCAAAAGCTGCTG
GGTGGAACTGCTAGTGACATTTACAACATTGCCGATATCATCGCGAGCAC
CAAGGATGCTCGCTACGCTACCATCGGCGTCCTGACCATCGTGAGCTTCC
TCGGCACGCTGCTGCTGGCGCTCCACGTCACATCGACGGTCCGCCAAGCC
AAGGATCAGCCGGATGTTCCGGGTACAGCGGCGTCAATGGCAGCGTCGGC
TTCGGCGGCGGGTGGCGGCGTCGGCGGTCTCTCGCATAGCATCGCACCTG
TTGCGGAGCCTGGCACTGGCATCGGCGGCGGCGGCGGTGGCGGCGGCAGC
GGCGATGGTGATGGCGGCAGCATCGATTTTGGTGGCAGCACCGCCGCCGT
GAGCAGCGGCAGCCGCCGCAAGAAGCCGAGGAGCGCGACCCGGATCTTTG
GGCGCGGCACTACGTGTGTTGCGGTAACCCTGCTCTTTACCACTTGCGTT
ATTCTCTCAGCAGCCTTCATGTCGGCAATCTTCGCCGCCGATTATTGCAT
CGAGCCGACGGAGCTCTCGATCAACGCCTTCACTTCGGACAGCGAGCTGA
CGCAAGAAGCCGTAAGCTATTATACCCAATGCAACGGCACCGACTCCGGG
CCCATCGGCACGCTGCTCCTGACTATTTCGTGCTACGCGGACGAAATGGG
CGGCGTCGTTTCGGACTTCGACGCGGGAAACCTGCCGAACAACTGCGCCG
CTGAGGCCAACAGTAGCACGCTGCTGAAGGAGGATTTGTTGGAGCTATCG
TCACTCATTGCCTACGCCACGGAGCTGTCGTCGTGCGCCAACGTGAATCC
CCTGTTTGTAGAGCTGTCGTTCGACACGACGTGCACGGACGTCATCAAGT
TTTCGCTGTGGGTGTGGCTCGGCGGCGTCTTCTACTTCTGCCTCCTGATG
GCTTACCTGTTTCTAGGACGTGCCATCGTGCTGCGAACGCGCCAAGAGAT
CAAGACCGCGAGAAAGACGGCGGCGGCGGTGGCAGCGGCAGCCGCGGCGG
GGGCGGCGGCCGCCGCGGTGGCAGTGGGGCAAAGAGAGGTTGGAAAGGAT
GGGGAGGAAAAGTCTTGGAACGATTTGGAAGGAGGAGCGTCTGTAGCAGC
CCATTCTGCTGAGCTTCCCGAGGCTGCGCCAGTGGCGTTAGCGGGCTTTG
CGACGGTGGCAGAGAGCCACCCGACAGAATAG
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