mRNA_P-wetherbeei_contig21282.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21282.1.1
Unique NamemRNA_P-wetherbeei_contig21282.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig21282.1.1 vs. uniprot
Match: UPI001C3D5C80 (OB-fold domain-containing protein n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3D5C80)

HSP 1 Score: 276 bits (705), Expect = 1.230e-93
Identity = 126/137 (91.97%), Postives = 131/137 (95.62%), Query Frame = 1
Query:   22 YTKPLPDMRPEGDHWWQAMHEHTFLLPTDSAGTPFWYPRALVPGTLEPTEWVESKGTGSVYTYSVHFIGPSKAYKGDPPHTVALIDLDEGVRMMSNLVKDEEGYPSIDPDDVSIGMKVRLVFHDVTDTITLPKFVAA 432
            YTKPLPDMRPEGDHWW+AMHEHTFLLPTD+ G PFWYPRALVPGTLEPT+W ESKG G+VYTYSVHFIGPSKAYKGDPPHTVALIDLDEGVR+MSNLVKDEEGYPSIDPDDV IGMKVRLVFHDVTD ITLPKFVAA
Sbjct:   10 YTKPLPDMRPEGDHWWKAMHEHTFLLPTDAQGKPFWYPRALVPGTLEPTQWTESKGNGTVYTYSVHFIGPSKAYKGDPPHTVALIDLDEGVRLMSNLVKDEEGYPSIDPDDVKIGMKVRLVFHDVTDEITLPKFVAA 146          
BLAST of mRNA_P-wetherbeei_contig21282.1.1 vs. uniprot
Match: A0A6L7TWY1_9BACT (Zn-ribbon domain-containing OB-fold protein n=5 Tax=Candidatus Dadabacteria bacterium TaxID=2080303 RepID=A0A6L7TWY1_9BACT)

HSP 1 Score: 161 bits (407), Expect = 2.580e-48
Identity = 82/147 (55.78%), Postives = 104/147 (70.75%), Query Frame = 1
Query:    1 MSEEMAPYTKPLPDMRPEGDHWWQAMHEHTFLLPTD-SAGTPFWYPRALVPG--TLEPTEWVESKGTGSVYTYSVHFIGPSKAYKGDPPHTVALIDLDEGVRMMSNLVKDEEGYPSIDPDDVSIGMKVRLVFHDVTDTITLPKFVAA 432
            MSEE   Y KPLP+ RPE   +W+A  EH  ++P     G  F+YPRAL PG    E  EWVES+G G V+T+S+H +GPSKAYKG+PP+ VALI++DEGV+MMSN+V        +DP DVSIGM+V++VF DVTD +TLPKF  A
Sbjct:    1 MSEEKKEYNKPLPEFRPETKPFWEAAKEHRLVIPRSRETGEFFFYPRALSPGGDMSEDIEWVESEGRGKVWTFSIHHMGPSKAYKGEPPYVVALIEMDEGVKMMSNVV-------DVDPADVSIGMEVQVVFDDVTDEVTLPKFKPA 140          
BLAST of mRNA_P-wetherbeei_contig21282.1.1 vs. uniprot
Match: A0A524JRC4_9BACT (Zn-ribbon domain-containing OB-fold protein n=1 Tax=Thermodesulfobacteriales bacterium TaxID=2528040 RepID=A0A524JRC4_9BACT)

HSP 1 Score: 147 bits (370), Expect = 1.050e-42
Identity = 71/144 (49.31%), Postives = 99/144 (68.75%), Query Frame = 1
Query:    1 MSEEMAPYTKPLPDMRPEGDHWWQAMHEHTFLLP-TDSAGTPFWYPRALVPGT--LEPTEWVESKGTGSVYTYSVHFIGPSKAYKGDPPHTVALIDLDEGVRMMSNLVKDEEGYPSIDPDDVSIGMKVRLVFHDVTDTITLPKF 423
            M+EE   Y KPLPD RPE   +W+    H  +LP +   G  F+YPRA+ PG    E  EWVE+ G  +V+TY++H +GPSKAYKGDPP+ VAL++++EGV+MM+N++        +DP DV IGM+V +V+ D+TD +TLPKF
Sbjct:    1 MAEEKT-YNKPLPDFRPETKPYWEGCKNHALVLPRSKETGKFFFYPRAMSPGDDMSEDIEWVEASGKATVWTYAIHHMGPSKAYKGDPPYVVALVEMEEGVKMMTNII-------DVDPHDVYIGMEVEVVYDDITDEVTLPKF 136          
BLAST of mRNA_P-wetherbeei_contig21282.1.1 vs. uniprot
Match: A0A2E3WJB5_9BACT (Uncharacterized protein n=13 Tax=Bacteria TaxID=2 RepID=A0A2E3WJB5_9BACT)

HSP 1 Score: 137 bits (346), Expect = 4.760e-39
Identity = 75/145 (51.72%), Postives = 96/145 (66.21%), Query Frame = 1
Query:    1 MSEEMAPYTKPLPDMRPEGDHWWQAMHEHTFLLPT-DSAGTPFWYPRAL--VPGTLEPT-EWVESKGTGSVYTYSVHFIGPSKAYKGDPPHTVALIDLDEGVRMMSNLVKDEEGYPSIDPDDVSIGMKVRLVFHDVTDTITLPKF 423
            MSEE   YTKPLPD RPE   +W    EH  LLP     G  F+YPRA+   PG++    +WVES G G+V+TYSVH++GP+KAYKG+  + VALI+LD+GV MMSN+V         DP+ V+IGM+V +VF D TD +T  KF
Sbjct:    1 MSEEKNEYTKPLPDFRPETKPFWDGTKEHKLLLPKCKETGKVFFYPRAISPFPGSVNMDFDWVESSGKGTVWTYSVHYMGPTKAYKGET-YVVALIELDDGVXMMSNVVX-------CDPESVTIGMEVEVVFEDATDEVTFAKF 137          
BLAST of mRNA_P-wetherbeei_contig21282.1.1 vs. uniprot
Match: A0A7V2EH26_9BACT (Zn-ribbon domain-containing OB-fold protein n=1 Tax=Candidatus Dadabacteria bacterium TaxID=2080303 RepID=A0A7V2EH26_9BACT)

HSP 1 Score: 132 bits (333), Expect = 4.880e-37
Identity = 65/145 (44.83%), Postives = 94/145 (64.83%), Query Frame = 1
Query:    4 SEEMAPYTKPLPDMRPEGDHWWQAMHEHTFLLPTDSA-GTPFWYPRALVPGTL-EPTEWVESKGTGSVYTYSVHFIGPSKAYKGDPPHTVALIDLDEGVRMMSNLVKDEEGYPSIDPDDVSIGMKVRLVFHDVTDTITLPKFVAA 432
            ++E   Y KPLP+ RPE   +W+A   H  +LP   A G  F+YPRAL P  + +  EW+++ G   V+T+S+H +GP+ AYKG+PP+ VA+++  EGV+MM+N+V       +  P+DV IGM V +VF DVT  +TLPKF  A
Sbjct:    5 TKENRKYEKPLPEFRPETKPYWEACKRHELVLPRCKACGNVFFYPRALCPNCMSQDLEWIKASGKAKVWTFSIHHMGPTPAYKGEPPYVVAIVETQEGVKMMTNIV-------NCKPEDVRIGMDVEVVFDDVTPEVTLPKFQPA 142          
BLAST of mRNA_P-wetherbeei_contig21282.1.1 vs. uniprot
Match: A0A7D7ZCV3_9BACT (OB_aCoA_assoc domain-containing protein n=1 Tax=Candidatus Dadabacteria bacterium TaxID=2080303 RepID=A0A7D7ZCV3_9BACT)

HSP 1 Score: 131 bits (329), Expect = 1.700e-36
Identity = 67/137 (48.91%), Postives = 90/137 (65.69%), Query Frame = 1
Query:   22 YTKPLPDMRPEGDHWWQAMHEHTFLLP-TDSAGTPFWYPRALVPGT--LEPTEWVESKGTGSVYTYSVHFIGPSKAYKGDPPHTVALIDLDEGVRMMSNLVKDEEGYPSIDPDDVSIGMKVRLVFHDVTDTITLPKF 423
            Y KPLP+ RPE   +W    +H  +LP +   G  F+YPRA  PG       EWV+S G G V+T+S+H +GP+KAYK D  + VAL++LDEGV+MMSN+V+        D +DV IGM+V +VF DVT+ +TLPKF
Sbjct:    6 YAKPLPEFRPETKPFWDGCKKHDLMLPRSKQTGEFFFYPRAFSPGDDMSADIEWVKSPGKGKVWTFSIHHMGPTKAYKEDGSYVVALVELDEGVKMMSNIVE-------CDVNDVEIGMEVEVVFDDVTEEVTLPKF 135          
BLAST of mRNA_P-wetherbeei_contig21282.1.1 vs. uniprot
Match: A0A0T5ZSD8_9BACT (Uncharacterized protein n=1 Tax=Candidatus Dadabacteria bacterium CSP1-2 TaxID=1640508 RepID=A0A0T5ZSD8_9BACT)

HSP 1 Score: 123 bits (309), Expect = 2.180e-33
Identity = 61/136 (44.85%), Postives = 87/136 (63.97%), Query Frame = 1
Query:   22 YTKPLPDMRPEGDHWWQAMHEHTFLLPT-DSAGTPFWYPRALVPGTL-EPTEWVESKGTGSVYTYSVHFIGPSKAYKGDPPHTVALIDLDEGVRMMSNLVKDEEGYPSIDPDDVSIGMKVRLVFHDVTDTITLPKF 423
            Y KPLP+ RPE   +W A  +H F LP     G  F+YPRAL P  + +  E +++ G   V+T+++H +GP+ AYKG+PP+ VA+++  EGV+MM+N+V          P+DV IGM V +VF DVT  +TLPKF
Sbjct:   12 YEKPLPEFRPETKPYWDACKKHEFSLPRCKKCGKVFFYPRALCPVCMSQDLELIKASGKAKVWTFAIHHMGPTPAYKGEPPYVVAIVETQEGVKMMTNIV-------GCKPEDVRIGMAVEVVFDDVTPEVTLPKF 140          
BLAST of mRNA_P-wetherbeei_contig21282.1.1 vs. uniprot
Match: A0A534ZYH1_9DELT (Zn-ribbon domain-containing OB-fold protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534ZYH1_9DELT)

HSP 1 Score: 107 bits (267), Expect = 4.130e-27
Identity = 57/140 (40.71%), Postives = 84/140 (60.00%), Query Frame = 1
Query:   10 EMAPYTKPLPDMRPEGDHWWQAMHEHT-FLLPTDSAGTPFWYPRALVPGTLEP-TEWVESKGTGSVYTYSVHFIGPSKAYKGDPPHTVALIDLDEGVRMMSNLVKDEEGYPSIDPDDVSIGMKVRLVFHDVTDTITLPKF 423
            E  PY KPLP +  E   +W+A+  H  +       GT  +YPRAL P  L   TEWV + G G+VY+++V +   +  ++ + P+ +A+++LDEGVRMM+N+V          PD V +G+ V++VF DVT  ITLPKF
Sbjct:    3 ETKPYRKPLPRLDEESRGYWEALARHELYFQRCRDCGTKRFYPRALCPACLSSATEWVRASGRGTVYSFTVTYQNQAPGFREELPYVLAIVELDEGVRMMTNVV-------GCAPDAVRVGLPVQVVFEDVTAEITLPKF 135          
BLAST of mRNA_P-wetherbeei_contig21282.1.1 vs. uniprot
Match: A0A382DQV9_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382DQV9_9ZZZZ)

HSP 1 Score: 107 bits (267), Expect = 4.250e-27
Identity = 54/140 (38.57%), Postives = 86/140 (61.43%), Query Frame = 1
Query:   19 PYTKPLPDMRPEGDHWWQAMHEHTFLLPT-DSAGTPFWYPRALVPGTLEP-TEWVESKGTGSVYTYSVHFIGPSKAYKGDPPHTVALIDLDEGVRMMSNLVKDEEGYPSIDPDDVSIGMKVRLVFHDVTDTITLPKFVAA 432
            PYTKP+P  + E D++W+    H   L         ++YPR + P      T W+++ G G+++T+++    P+ A++ D P  VA++DL+EGVRM +NLV+ E      DP +++IGM+V +VF D+TD I+LPKF  A
Sbjct:    5 PYTKPVPVPQGESDYYWEKAKAHELWLRNCGDCDQAYFYPRDICPHCFSRNTSWIQASGKGTLHTFAIVHRAPTPAFRDDAPFVVAMVDLEEGVRMPTNLVEVEP-----DPANITIGMEVEVVFEDITDEISLPKFKPA 139          
BLAST of mRNA_P-wetherbeei_contig21282.1.1 vs. uniprot
Match: A0A5N9G7V9_9CHLR (Uncharacterized protein n=3 Tax=Chloroflexi TaxID=200795 RepID=A0A5N9G7V9_9CHLR)

HSP 1 Score: 105 bits (262), Expect = 2.290e-26
Identity = 56/139 (40.29%), Postives = 83/139 (59.71%), Query Frame = 1
Query:   22 YTKPLPDMRPEGDHWWQAMHEHTFLLPT-DSAGTPFWYPRALVPGTLEP-TEWVESKGTGSVYTYSVHFIGPSKAYKGDPPHTVALIDLDEGVRMMSNLVKDEEGYPSIDPDDVSIGMKVRLVFHDVTDTITLPKFVAA 432
            Y KPLP  + E D++W    EH   L   D  GTP++YPR + P      T WV++ G  S+YT+++    P   ++ D P   A+++L+EG  M +N+V D+   P+  P+++SIGM + +VF DVTD ITLPKF  A
Sbjct:    5 YNKPLPTPQGESDYYWDKAKEHELWLRNCDDCGTPYFYPRDISPCCFSKNTSWVQASGKASLYTFAIVHRAPHPGFRDDVPFVPAMVELEEGPIMATNVVIDD---PT--PENLSIGMALEVVFDDVTDAITLPKFKPA 138          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21282.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C3D5C801.230e-9391.97OB-fold domain-containing protein n=1 Tax=Miltonco... [more]
A0A6L7TWY1_9BACT2.580e-4855.78Zn-ribbon domain-containing OB-fold protein n=5 Ta... [more]
A0A524JRC4_9BACT1.050e-4249.31Zn-ribbon domain-containing OB-fold protein n=1 Ta... [more]
A0A2E3WJB5_9BACT4.760e-3951.72Uncharacterized protein n=13 Tax=Bacteria TaxID=2 ... [more]
A0A7V2EH26_9BACT4.880e-3744.83Zn-ribbon domain-containing OB-fold protein n=1 Ta... [more]
A0A7D7ZCV3_9BACT1.700e-3648.91OB_aCoA_assoc domain-containing protein n=1 Tax=Ca... [more]
A0A0T5ZSD8_9BACT2.180e-3344.85Uncharacterized protein n=1 Tax=Candidatus Dadabac... [more]
A0A534ZYH1_9DELT4.130e-2740.71Zn-ribbon domain-containing OB-fold protein n=1 Ta... [more]
A0A382DQV9_9ZZZZ4.250e-2738.57Uncharacterized protein n=1 Tax=marine metagenome ... [more]
A0A5N9G7V9_9CHLR2.290e-2640.29Uncharacterized protein n=3 Tax=Chloroflexi TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21282contigP-wetherbeei_contig21282:138..572 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1123504.JQKD01000004_gene5011
PFAMsDUF35_N,OB_aCoA_assoc
Model size435
Max annot lvl28216|Betaproteobacteria
KEGG koko:K07068
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.72e-28
EggNOG OGsCOG1545@1|root,COG1545@2|Bacteria,1RB09@1224|Proteobacteria,2VV15@28216|Betaproteobacteria,4AJFM@80864|Comamonadaceae
DescriptionRubredoxin-like zinc ribbon domain (DUF35_N)
Cds size435
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186220.800797-CDS-P-wetherbeei_contig21282:137..5721683186220.800797-CDS-P-wetherbeei_contig21282:137..572Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21282 138..572 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21282.1.1prot_P-wetherbeei_contig21282.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21282 138..572 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21282.1.1

>prot_P-wetherbeei_contig21282.1.1 ID=prot_P-wetherbeei_contig21282.1.1|Name=mRNA_P-wetherbeei_contig21282.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=145bp
MSEEMAPYTKPLPDMRPEGDHWWQAMHEHTFLLPTDSAGTPFWYPRALVP
GTLEPTEWVESKGTGSVYTYSVHFIGPSKAYKGDPPHTVALIDLDEGVRM
MSNLVKDEEGYPSIDPDDVSIGMKVRLVFHDVTDTITLPKFVAA*
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mRNA from alignment at P-wetherbeei_contig21282:138..572-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21282.1.1 ID=mRNA_P-wetherbeei_contig21282.1.1|Name=mRNA_P-wetherbeei_contig21282.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=435bp|location=Sequence derived from alignment at P-wetherbeei_contig21282:138..572- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGAAGAGATGGCGCCCTACACAAAGCCCCTGCCCGACATGCGCCC GGAGGGCGATCACTGGTGGCAGGCGATGCACGAGCACACATTCCTGCTGC CGACCGACTCGGCGGGTACGCCCTTCTGGTACCCGCGGGCGCTCGTGCCG GGAACCCTCGAGCCCACCGAGTGGGTCGAGTCGAAGGGCACCGGCAGCGT CTACACCTACTCGGTCCACTTCATCGGCCCGAGCAAGGCCTACAAGGGTG ACCCGCCGCACACCGTTGCGCTGATCGACCTCGACGAGGGCGTGCGGATG ATGTCCAATCTCGTCAAGGACGAGGAGGGTTACCCGTCGATCGACCCGGA TGACGTGTCGATCGGCATGAAGGTGCGGCTGGTTTTCCACGACGTCACCG ACACGATCACGCTGCCGAAGTTCGTCGCCGCCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21282:138..572-

>mRNA_P-wetherbeei_contig21282.1.1 ID=mRNA_P-wetherbeei_contig21282.1.1|Name=mRNA_P-wetherbeei_contig21282.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=435bp|location=Sequence derived from alignment at P-wetherbeei_contig21282:138..572- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGAAGAGATGGCGCCCTACACAAAGCCCCTGCCCGACATGCGCCC
GGAGGGCGATCACTGGTGGCAGGCGATGCACGAGCACACATTCCTGCTGC
CGACCGACTCGGCGGGTACGCCCTTCTGGTACCCGCGGGCGCTCGTGCCG
GGAACCCTCGAGCCCACCGAGTGGGTCGAGTCGAAGGGCACCGGCAGCGT
CTACACCTACTCGGTCCACTTCATCGGCCCGAGCAAGGCCTACAAGGGTG
ACCCGCCGCACACCGTTGCGCTGATCGACCTCGACGAGGGCGTGCGGATG
ATGTCCAATCTCGTCAAGGACGAGGAGGGTTACCCGTCGATCGACCCGGA
TGACGTGTCGATCGGCATGAAGGTGCGGCTGGTTTTCCACGACGTCACCG
ACACGATCACGCTGCCGAAGTTCGTCGCCGCCTAG
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