mRNA_P-wetherbeei_contig2127.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2127.2.1
Unique NamemRNA_P-wetherbeei_contig2127.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2127.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2127contigP-wetherbeei_contig2127:946..1894 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size809
Hectar predicted targeting categoryother localisation
Exons2
Cds size678
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186220.5413723-CDS-P-wetherbeei_contig2127:945..15031683186220.5413723-CDS-P-wetherbeei_contig2127:945..1503Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2127 946..1503 -
1683186220.5512302-CDS-P-wetherbeei_contig2127:1643..17631683186220.5512302-CDS-P-wetherbeei_contig2127:1643..1763Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2127 1644..1763 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186220.56087-UTR-P-wetherbeei_contig2127:1763..18941683186220.56087-UTR-P-wetherbeei_contig2127:1763..1894Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2127 1764..1894 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2127.2.1prot_P-wetherbeei_contig2127.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2127 946..1763 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2127.2.1

>prot_P-wetherbeei_contig2127.2.1 ID=prot_P-wetherbeei_contig2127.2.1|Name=mRNA_P-wetherbeei_contig2127.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=226bp
MSSQQNVGGDGASGLRHQMKVAEDRREERRRRIAGAVKLQAWLRSSKASI
RYTRLRAATVTVQRRHRARALNSAQGDLAGDTPFAAADADAGAITAPSAM
GIAGAALSAAPIERFGEADFPADRISPELGRRGSAARVLRVDDLCVGVLA
FSPDLRGRTIATPDRRDSLGGRVGGGGGSRHGGAALGTKSGGPASFEERF
GARAVAAAAENRPLGGPTFWRGGAIG
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mRNA from alignment at P-wetherbeei_contig2127:946..1894-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2127.2.1 ID=mRNA_P-wetherbeei_contig2127.2.1|Name=mRNA_P-wetherbeei_contig2127.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=949bp|location=Sequence derived from alignment at P-wetherbeei_contig2127:946..1894- (Phaeothamnion wetherbeei SAG_119_79)
AACAAATCAAAATATATAAACCACCCCACCACAAAAGTTGTGGTCCCTTA
TGAACTAGGCTCCGACAACGCCAGAGCGCTCCTGTTTTTCCTGTCTGCGA
AGAGAGAGGCGAAAATCTCTCAACGTCGACAATGAGCTCCCAACAGAACG
TAGGAGGAGATGGAGCCTCAGGTCTCCGCCACCAGATGAAGGTGGCGGAA
GATCGCAGGGAGGAGCGAAGGCGCCGCATCGCAGGCGCTGTCAAACTCCA
GGTAAGGAAGTAACCGATTCCCCAACTTCATGTTTTGAAACCTTTCGGTG
AGGTCTTTCCGTGAAAAGAAGTTAGAAACACTGTAGAAGCGAGGTGCAAC
GAATATGTGCCCTTGGTTGTGCCATCGCATTTCTTGCGCAGGCTTGGCTG
CGCAGCTCGAAGGCATCGATTCGGTATACGCGCCTACGCGCTGCGACCGT
GACAGTGCAGCGGCGGCATCGGGCGCGGGCCTTGAATTCGGCGCAGGGCG
ATCTGGCTGGCGACACTCCTTTTGCCGCTGCCGACGCCGACGCCGGTGCC
ATCACCGCCCCTAGTGCCATGGGCATCGCCGGTGCAGCCTTGTCTGCCGC
CCCAATCGAACGTTTTGGCGAGGCTGACTTTCCGGCCGACCGCATCTCGC
CGGAGCTGGGCCGCCGCGGCAGCGCGGCGCGGGTGCTGCGCGTGGACGAC
CTCTGCGTCGGTGTCCTAGCCTTCTCACCCGACTTGCGGGGCCGCACCAT
TGCCACACCCGACCGCCGTGACAGCCTCGGGGGCCGCGTTGGTGGCGGCG
GCGGTAGCCGCCACGGCGGCGCCGCGCTCGGCACGAAAAGCGGTGGTCCT
GCGAGCTTTGAGGAGCGGTTCGGCGCGCGGGCGGTGGCGGCGGCGGCGGA
GAACCGTCCGCTGGGCGGCCCCACCTTTTGGCGCGGCGGCGCCATCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2127:946..1894-

>mRNA_P-wetherbeei_contig2127.2.1 ID=mRNA_P-wetherbeei_contig2127.2.1|Name=mRNA_P-wetherbeei_contig2127.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=678bp|location=Sequence derived from alignment at P-wetherbeei_contig2127:946..1894- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCTCCCAACAGAACGTAGGAGGAGATGGAGCCTCAGGTCTCCGCCA
CCAGATGAAGGTGGCGGAAGATCGCAGGGAGGAGCGAAGGCGCCGCATCG
CAGGCGCTGTCAAACTCCAGGCTTGGCTGCGCAGCTCGAAGGCATCGATT
CGGTATACGCGCCTACGCGCTGCGACCGTGACAGTGCAGCGGCGGCATCG
GGCGCGGGCCTTGAATTCGGCGCAGGGCGATCTGGCTGGCGACACTCCTT
TTGCCGCTGCCGACGCCGACGCCGGTGCCATCACCGCCCCTAGTGCCATG
GGCATCGCCGGTGCAGCCTTGTCTGCCGCCCCAATCGAACGTTTTGGCGA
GGCTGACTTTCCGGCCGACCGCATCTCGCCGGAGCTGGGCCGCCGCGGCA
GCGCGGCGCGGGTGCTGCGCGTGGACGACCTCTGCGTCGGTGTCCTAGCC
TTCTCACCCGACTTGCGGGGCCGCACCATTGCCACACCCGACCGCCGTGA
CAGCCTCGGGGGCCGCGTTGGTGGCGGCGGCGGTAGCCGCCACGGCGGCG
CCGCGCTCGGCACGAAAAGCGGTGGTCCTGCGAGCTTTGAGGAGCGGTTC
GGCGCGCGGGCGGTGGCGGCGGCGGCGGAGAACCGTCCGCTGGGCGGCCC
CACCTTTTGGCGCGGCGGCGCCATCGGC
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