mRNA_P-wetherbeei_contig21212.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21212.1.1
Unique NamemRNA_P-wetherbeei_contig21212.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig21212.1.1 vs. uniprot
Match: A0A7X7CJN0_9CLOT (Uncharacterized protein n=1 Tax=Clostridiaceae bacterium TaxID=1898204 RepID=A0A7X7CJN0_9CLOT)

HSP 1 Score: 181 bits (460), Expect = 3.430e-52
Identity = 94/273 (34.43%), Postives = 171/273 (62.64%), Query Frame = 1
Query:    1 RSMELSTVIKDYRNLIHPGREIRKNETFNFETANVAFSLLKIIVSELRENYLKLYGYTAKDVMQKVTSDDLSISIFDELIEKLNQSEKVKLFNSIVEFK-----KYLANKRPLLEKIKPYLPEEVIIEKLTNLLHLIETGDSSEVIYYYNLFHSDIGILDDSSINLITKYILSYIKEEGNLGEIQKSVTRQTFTSIGKHIKTEKNEQLFIEVLLDYYMHKEKNRYVYSMYFQMINGLETTKRQEIEVKLDKLKESYFDLTFGNRFFEDDGLPF 804
            R   LS+V+K+YRNLIHPGRE+R NE F+ ETANV+ SL+++I+ E++  Y+++YGY+AKDV+QK+++D+LSI IF+EL+EKLN +E++KL N++++ +       L N +  ++ +KP++ ++ +I+ L  L   +ETG+  E++    LF  D+ +L++   +LI KY +S +     L E+      + F ++ K +++    + + E+L DYY   + +  V  +Y+Q++NG     ++++E   +  +    +  F N    ++ LPF
Sbjct:   44 RIKSLSSVVKNYRNLIHPGRELRLNEQFDKETANVSVSLVRLILKEIKTKYVEIYGYSAKDVIQKISNDNLSIGIFEELVEKLNYNERLKLLNNLIDIELSTDFHSLENPKQYVDILKPFINKDDLIKHLLTLHKKVETGERWEILSLLKLFKEDLNLLEEGKRDLIIKYSISVLNNTKRLTEVDNLRISRVFNTLPKIVESSGLIEEYKEMLNDYYWGTKNHSNVQYLYYQLMNGFSKEVKEDLEANFEINEPFLSETRFENDI--EESLPF 314          
BLAST of mRNA_P-wetherbeei_contig21212.1.1 vs. uniprot
Match: A0A2N2WIF8_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium HGW-Bacteroidetes-6 TaxID=2013696 RepID=A0A2N2WIF8_9BACT)

HSP 1 Score: 145 bits (367), Expect = 9.980e-38
Identity = 87/262 (33.21%), Postives = 148/262 (56.49%), Query Frame = 1
Query:    1 RSMELSTVIKDYRNLIHPGREIRKNETFNFETANVAFSLLKIIVSELRENYLKLYGYTAKDVMQKVTSDDLSISIFDELIEKLNQSEKVKLFNSIVEF--------------KKYLANK-------RPLLEKIKPYLPEEVIIEKLTNLLHLIETGDSSEVIYYYNLFHSDIGILDDSSINLITKYILSY-IKEEGNLGEIQKSVTRQTFTSIGKHIKTEKNEQLFIEVLLDYYMHKEKNRYVYSMYFQMINGLETTKRQEI 720
            +   L+TV+KDYRNLIHPG+EIRK E FN E+A +A  ++ II++ ++  Y+  YG+TA+++++++  D    S+FD+++ KLNQ+EK KL   +V+F               K + N+       +PL  ++KP LP +VI   L  L+  +ETG   +    YNLFH +IG L      LI  Y+L + I    N  +I      +T+++IGK+++++K +    + + DY ++   +     ++  +INGL+   R E+
Sbjct:   84 KEKNLATVVKDYRNLIHPGKEIRKEEKFNSESAIIAAKVVDIILNSVKSVYISKYGHTAEEILERLKHDWHYQSVFDKVVIKLNQNEKEKLLQLLVDFDVWEKSHWDSFSYGNKPIRNEYYDLEFVKPLTNQLKPLLPNDVIKNYLKQLIKELETGSKEKAYCLYNLFHDNIGELSPDEQELIVIYMLGFAISLLENTSDI---ALEKTYSTIGKYVQSDKTKAALKKFIQDYSVNSSGSEKDLDLFEHVINGLKVELRTEM 342          
BLAST of mRNA_P-wetherbeei_contig21212.1.1 vs. uniprot
Match: UPI001EFA74DF (DUF4145 domain-containing protein n=1 Tax=Tenacibaculum dicentrarchi TaxID=669041 RepID=UPI001EFA74DF)

HSP 1 Score: 145 bits (365), Expect = 1.920e-37
Identity = 90/290 (31.03%), Postives = 155/290 (53.45%), Query Frame = 1
Query:    1 RSMELSTVIKDYRNLIHPGREIRKNETFNFETANVAFSLLKIIVSELRENYLKLYGYTAKDVMQKVTSDDLSISIFDELIEKLNQSEKVKLFNSIVEFKKYLANK---------------------RPLLEKIKPYLPEEVIIEKLTNLLHLIETGDSSEVIYYYNLFHSDIGILDDSSINLITKYILSYIKEEGNLGEIQKSVTRQTFTSIGKHIKTEKNEQL---FIEVLLDYYMHKEKNRYVYSMYFQMINGLETTKRQEIEVKLDKLKESYFDLTFGNRFFEDDGL 798
            +   L+ V+KDYRNLIHPGREIRK E F+F++A ++ S+L IIV  ++  YL+ YGY+A +V +K+  D    SIFD++I KLNQ+E+ KL   +++F K+  +K                     +P + K+KP +  ++I   L  ++  IETG+S      ++LFH ++ ++ +    ++  Y+L+       L E +  +  +TF++IGK+IKT+K++     FI+    ++ HK     +  +  Q+ N L    + + E  L        +L    + F D+ L
Sbjct:   84 KEKNLAGVVKDYRNLIHPGREIRKGEKFDFDSAKISESVLNIIVDSVKTVYLEKYGYSADEVFEKLKKDWHFQSIFDKVILKLNQNERSKLLGYLIDFDKWEKSKWECFMQEGPMEEYEVYDLEDVKPFILKLKPLVSSDLIKSNLAKMIKEIETGESINAYSLFHLFHENMDLMSEDEQEIVVIYMLNIYTTV--LDENKNVIADKTFSTIGKYIKTDKSKNALKDFIDFCAVHFSHKRIKSEM-DLLEQVFNSLSADVKTQAETHLTSFLSPIENLPPNIKIFYDEAL 370          
BLAST of mRNA_P-wetherbeei_contig21212.1.1 vs. uniprot
Match: A0A1H6XMR4_9BACT (Uncharacterized protein n=1 Tax=Dyadobacter sp. SG02 TaxID=1855291 RepID=A0A1H6XMR4_9BACT)

HSP 1 Score: 140 bits (352), Expect = 1.200e-35
Identity = 91/288 (31.60%), Postives = 160/288 (55.56%), Query Frame = 1
Query:    1 RSMELSTVIKDYRNLIHPGREIRKNETFNFETANVAFSLLKIIVSELRENYLKLYGYTAKDVMQKVTSDDLSISIFDELIEKLNQSEKVKLFNSIVEFK-------KYLA-NKRPLLEKIKPYLPEEVIIEKLTNLLHLIETGDSSEVIYYYNLFHSDIGILDDSSINLITKYILSYIKEEGNLGE-IQKSVTRQTFTSIGK---HIKTEKNEQLFIEVLLDYYMHKEKNRYVYSMYFQMINGLETTKRQEIEVKLDKLKESYFDLTFGNRFFED--------DGLPF 804
            RS +L +V++ YRNLIHPGRE+R+NE F+ ETA V+ SL+ II +E+R   +  +G++A D++ K+  D+ S  +F EL+ +L+Q EK KL+  + E++       + LA N R L+ ++KP+L  E I+E++  L+  +  G+S +++  Y L++SD+ +L D     +  Y+L+YI    N+   + KS     F S+     ++K+E+    F +++    +  +    + S+Y  +++ L    + EIE  L    ++   L     F+ED        D LPF
Sbjct:   87 RSKDLLSVLRGYRNLIHPGRELRENEKFDIETAKVSVSLIVIISNEIRNYLIDKFGFSASDIIGKLERDETSAELFRELLMRLSQREKHKLYYLLKEYRPGRKAIQRTLADNTRSLIYQLKPFLTTEFILEQVKGLVEKVHIGESVDILVLYRLWYSDLRLLSDRDRETVVLYVLNYINY--NISSWLDKSEYYHEFDSLSTASYYVKSERTVAEFKQLITTLILLHDGRPRIVSLYSNLVDKLSEDTKIEIERSL----QTGIPLGIAGGFWEDLVKFREEYDDLPF 368          
BLAST of mRNA_P-wetherbeei_contig21212.1.1 vs. uniprot
Match: UPI0016235F40 (hypothetical protein n=1 Tax=Sphingobacterium mizutaii TaxID=1010 RepID=UPI0016235F40)

HSP 1 Score: 135 bits (339), Expect = 5.850e-34
Identity = 77/227 (33.92%), Postives = 120/227 (52.86%), Query Frame = 1
Query:    1 RSMELSTVIKDYRNLIHPGREIRKNETFNFETANVAFSLLKIIVSELRENYLKLYGYTAKDVMQKVTSDDLSISIFDELIEKLNQSEKVKLFNSIVEFKKY---------------------LANKRPLLEKIKPYLPEEVIIEKLTNLLHLIETGDSSEVIYYYNLFHSDIGILDDSSINLITKYILSYIKEEGNLGEIQKSVTRQTFTSIGKHIKTEKNEQLFIE 618
            R   L+ VIKDYRNLIHPGRE+RK E F+ E A ++ +L+ II   +   Y   YGY A D++QK+  D    ++F+++I KLNQ+E+V+L   ++E + Y                     L   +  +  IKP +P EVII  L  ++H IETGD ++    +NLFH ++  L    + ++  YI S       L      +  +TF++IG HI + + ++   E
Sbjct:   48 REKNLAWVIKDYRNLIHPGREVRKAEKFSIEDAEISVALVGIIAKAIENKYKLNYGYLADDIIQKLKYDWQFQAVFEKVILKLNQTERVRLLALLIETEIYEKSFWDNFLGEGYIPEKESSNLEATKEFVMAIKPLVPHEVIIHHLKQMVHEIETGDQTKAFALFNLFHEELNYLSKDEVGMVVAYIFSLFSSV--LENCSDLINERTFSTIGNHIASARTQKALKE 272          
BLAST of mRNA_P-wetherbeei_contig21212.1.1 vs. uniprot
Match: A0A0E9N1K1_9BACT (Uncharacterized protein n=1 Tax=Flavihumibacter petaseus NBRC 106054 TaxID=1220578 RepID=A0A0E9N1K1_9BACT)

HSP 1 Score: 129 bits (324), Expect = 1.690e-31
Identity = 76/220 (34.55%), Postives = 128/220 (58.18%), Query Frame = 1
Query:   13 LSTVIKDYRNLIHPGREIRKNETFNFETANVAFSLLKIIVSELRENYLKLYGYTAKDVMQKVTSDDLSISIFDELIEKLNQSEKVKLFNSIVEFK-----KYL--------ANKRPLLE-------KIKPYLPEEVIIEKLTNLLHLIETGDSSEVIYYYNLFHSDIGILDDSSINLITKYILSYIKEEGNLGEIQKSVTR-QTFTSIGKHIKTEKNEQL 609
            L+TVIKDYRNLIHPGRE+RKNE F+FETA +AF +L +++ +++  Y + + YTA+D++  +  D    SI+  +I +L+  EK  L ++ V+ +     K++        A K P +        ++KP L +E I   L  L+  + +G S + +  YNLFH D+ +L +    ++  Y+ S +   GN+ E  + +   +TF++IGK+ K +K +QL
Sbjct:   88 LATVIKDYRNLIHPGREVRKNEQFDFETAQLAFQILNLLIRKIQRKYREKFAYTAEDILNSLNEDWNYNSIYSTVITRLSTGEKNNLIDAFVDIENKEKSKFIHYEGKFEYAEKYPEISDVKGYVIELKPLLRQETIKSYLKELIISVTSGHSLQAVSLYNLFHEDLHLLSEDDQFMVVTYMFSLL---GNILENYRELAADKTFSTIGKYAKGDKGKQL 304          
BLAST of mRNA_P-wetherbeei_contig21212.1.1 vs. uniprot
Match: A0A2Z4LRE9_9FLAO (Uncharacterized protein n=1 Tax=Muricauda aurantiaca TaxID=1383885 RepID=A0A2Z4LRE9_9FLAO)

HSP 1 Score: 128 bits (322), Expect = 3.950e-31
Identity = 71/227 (31.28%), Postives = 129/227 (56.83%), Query Frame = 1
Query:    1 RSMELSTVIKDYRNLIHPGREIRKNETFNFETANVAFSLLKIIVSELRENYLKLYGYTAKDVMQKVTSDDLSISIFDELIEKLNQSEKVKLFNSIVEFKKYLANK-------------------------RPLLEKIKPYLPEEVIIEKLTNLLHLIETGDSSEVIYYYNLFHSDIGILDDSSINLITKYILSYIKEEGNLGEIQKSVTRQTFTSIGKHIKTEKNEQ 606
            +  +L+ +IKDYRNLIHPG+E+R  E F+FETA +A  LL II+ +LR N+   YGY+A + ++K+ +D    S++  +I KL+++E+ KL   +++ ++ + +                          +P ++++KP L  ++I ++L  L   +  G+S +V+  YNLFH +IG LD     +I  Y+LS    E    + +     +T+++IGK+I T++ ++
Sbjct:   84 KEKQLAVIIKDYRNLIHPGKEVRTKEEFDFETAKLAKILLDIILKKLRTNHFDKYGYSANETLEKLKNDWEFQSVYGMVITKLHKNEREKLLTELIKIEQTIKSNFEHYKLMSDYDPKSEISELGNLEEIKPRIQELKPLLSNDIITDQLAELKDAVIRGESIKVLSLYNLFHEEIGQLDKDDQEMIAIYMLSLY--ESIFEDSRDLANDKTYSTIGKYIHTKRGKE 308          
BLAST of mRNA_P-wetherbeei_contig21212.1.1 vs. uniprot
Match: UPI0004932160 (hypothetical protein n=1 Tax=Pedobacter borealis TaxID=475254 RepID=UPI0004932160)

HSP 1 Score: 95.1 bits (235), Expect = 5.740e-19
Identity = 72/267 (26.97%), Postives = 129/267 (48.31%), Query Frame = 1
Query:   16 STVIKDYRNLIHPGREIRKNETFNFETANVAFSLLKIIVSELRENYLKLYGYTAKDVMQKVTSDDLSISIFDELIEKLNQSEKVKLFNSIVEFKKYLANKRPLL--------EKIKPYLPEEVIIEKLTNLLHLIETGDSSEVIYYYNLFHSDIG-ILDDSSINLITKYILSYIKEEGNLGEIQKSVTRQTFTSIGKHIKTEKNEQL-----FIEVLLDYYMHKEKNRYVYSMYFQMINGL-------ETTKRQEIEVKLDKLKESY 753
            S+ I+ YRNLIHPGRE+R  E F+++TA+++FS LK+I+ E+    L   G +A ++  K+T+D L   +F ++  KLN++EK KLF +++     L N+ P L        E +   +   + ++    L+  IE+G   + I Y    +  +   L+   + ++ +++L+ I     + E+           I   ++T+KN  +      +   L YY    KN  +Y   +  I+G        E  K+ E   + D L + Y
Sbjct:   89 SSGIQGYRNLIHPGREVRLKEKFDYDTASLSFSALKLILKEIEIKSLSEKGRSASEIFNKLTNDGLPDGLFIKITNKLNKTEKNKLFQTLISDD--LGNRGPQLVQGASKYAELLSSSMDSNIFLQLTKELMQEIESGSEVKAIKYIRYLYQRLSEYLEIQDLEIVKEWLLTQINSR--IAEVNDLRFLMFNNVIDALLRTDKNIAMSPKLKLLAQRLTYYYSYNKNSIIYLDIWTKIHGFLDADAYSELLKQMENYSQFDVLIKDY 351          
BLAST of mRNA_P-wetherbeei_contig21212.1.1 vs. uniprot
Match: A0A090QDU9_NONUL (Uncharacterized protein n=1 Tax=Nonlabens ulvanivorans TaxID=906888 RepID=A0A090QDU9_NONUL)

HSP 1 Score: 91.3 bits (225), Expect = 1.530e-17
Identity = 56/175 (32.00%), Postives = 92/175 (52.57%), Query Frame = 1
Query:   10 ELSTVIKDYRNLIHPGREIRKNETFNFETANVAFSLLKIIVSELRENYLKLYGYTAKDVMQKVTSDDLSISIFDELIEKLNQSEKVKLFNSIVEFKKYLANK------RPLL----EKIKPYLPEEVIIEKLTNLLHLIETGDSSEVIYYYNLFHSDIGILDDSSINLITKYILS 504
            +LSTVI++YRN +HP +E+R     N + A +A  L+ +++S ++EN+ KLYG  A+DV  K+ SD  S  I + L++K+NQ+E   L+   + F  YL +       R  +    EK++ ++ E +I   +  +   I  G   +    + LF   +      SIN I  YI S
Sbjct:   89 DLSTVIREYRNYVHPNKELRSKSDINEDKAVIACRLVNMVISSVKENHPKLYGNKAEDVFSKLHSDSHSRKILNYLLDKMNQNEIDLLYQKFISF--YLLSDSINYSDRNFVYFGKEKLEEFVSESIIKSYVFKIEQEITNGSKEQAERLFELFGDKLNYYSQDSINTILIYIYS 261          
BLAST of mRNA_P-wetherbeei_contig21212.1.1 vs. uniprot
Match: UPI001FD4E533 (hypothetical protein n=1 Tax=Chitinophaga sp. R8 TaxID=2920382 RepID=UPI001FD4E533)

HSP 1 Score: 87.8 bits (216), Expect = 2.990e-17
Identity = 39/96 (40.62%), Postives = 64/96 (66.67%), Query Frame = 1
Query:    1 RSMELSTVIKDYRNLIHPGREIRKNETFNFETANVAFSLLKIIVSELRENYLKLYGYTAKDVMQKVTSDDLSISIFDELIEKLNQSEKVKLFNSIV 288
            R   L+ VIKDYRNL+HPG+E+RK E F+ E A ++ SL+ I+ + + + Y   YGY A +++ K+  D    S+F ++  K+NQ+E++KL + +V
Sbjct:   84 RQKNLAWVIKDYRNLVHPGKEVRKAEKFSMEDAEISISLVGIVTNAIEDKYSATYGYKANEILNKLRMDWQYRSVFSKVAMKMNQTERIKLLDKLV 179          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21212.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X7CJN0_9CLOT3.430e-5234.43Uncharacterized protein n=1 Tax=Clostridiaceae bac... [more]
A0A2N2WIF8_9BACT9.980e-3833.21Uncharacterized protein n=1 Tax=Bacteroidetes bact... [more]
UPI001EFA74DF1.920e-3731.03DUF4145 domain-containing protein n=1 Tax=Tenaciba... [more]
A0A1H6XMR4_9BACT1.200e-3531.60Uncharacterized protein n=1 Tax=Dyadobacter sp. SG... [more]
UPI0016235F405.850e-3433.92hypothetical protein n=1 Tax=Sphingobacterium mizu... [more]
A0A0E9N1K1_9BACT1.690e-3134.55Uncharacterized protein n=1 Tax=Flavihumibacter pe... [more]
A0A2Z4LRE9_9FLAO3.950e-3131.28Uncharacterized protein n=1 Tax=Muricauda aurantia... [more]
UPI00049321605.740e-1926.97hypothetical protein n=1 Tax=Pedobacter borealis T... [more]
A0A090QDU9_NONUL1.530e-1732.00Uncharacterized protein n=1 Tax=Nonlabens ulvanivo... [more]
UPI001FD4E5332.990e-1740.63hypothetical protein n=1 Tax=Chitinophaga sp. R8 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21212contigP-wetherbeei_contig21212:2..808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1454007.JAUG01000015_gene4191
Model size807
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.74e-20
EggNOG OGs2BI0D@1|root,32C51@2|Bacteria,4NTCG@976|Bacteroidetes
Cds size801
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186219.1953948-UTR-P-wetherbeei_contig21212:1..71683186219.1953948-UTR-P-wetherbeei_contig21212:1..7Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig21212 2..7 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186219.2065208-CDS-P-wetherbeei_contig21212:7..8081683186219.2065208-CDS-P-wetherbeei_contig21212:7..808Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21212 8..808 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21212.1.1prot_P-wetherbeei_contig21212.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21212 8..808 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21212.1.1

>prot_P-wetherbeei_contig21212.1.1 ID=prot_P-wetherbeei_contig21212.1.1|Name=mRNA_P-wetherbeei_contig21212.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=267bp
MELSTVIKDYRNLIHPGREIRKNETFNFETANVAFSLLKIIVSELRENYL
KLYGYTAKDVMQKVTSDDLSISIFDELIEKLNQSEKVKLFNSIVEFKKYL
ANKRPLLEKIKPYLPEEVIIEKLTNLLHLIETGDSSEVIYYYNLFHSDIG
ILDDSSINLITKYILSYIKEEGNLGEIQKSVTRQTFTSIGKHIKTEKNEQ
LFIEVLLDYYMHKEKNRYVYSMYFQMINGLETTKRQEIEVKLDKLKESYF
DLTFGNRFFEDDGLPF*
back to top

mRNA from alignment at P-wetherbeei_contig21212:2..808+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21212.1.1 ID=mRNA_P-wetherbeei_contig21212.1.1|Name=mRNA_P-wetherbeei_contig21212.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=807bp|location=Sequence derived from alignment at P-wetherbeei_contig21212:2..808+ (Phaeothamnion wetherbeei SAG_119_79)
AGGTCAATGGAGCTGTCAACAGTAATTAAAGACTATAGGAACCTAATTCA TCCGGGGAGAGAAATTAGAAAAAATGAAACATTCAATTTTGAAACTGCTA ACGTTGCATTTAGTCTCCTTAAAATTATTGTGTCTGAACTTCGTGAGAAC TATTTAAAGCTTTATGGTTATACAGCTAAAGACGTAATGCAGAAAGTAAC ATCGGATGACCTGTCGATTAGCATCTTTGACGAACTTATTGAAAAACTTA ATCAATCAGAAAAAGTAAAACTCTTCAATAGTATTGTTGAGTTTAAAAAA TATCTTGCAAACAAGAGACCATTGCTCGAAAAGATTAAGCCTTACTTGCC AGAAGAAGTAATTATTGAAAAGCTTACTAACCTGCTGCATCTCATTGAGA CTGGTGATTCCTCTGAAGTAATTTATTATTACAATCTATTCCACTCTGAC ATTGGTATTCTCGATGATTCATCAATTAACCTAATTACCAAGTATATTCT TTCATACATTAAAGAAGAAGGAAACTTGGGAGAGATTCAAAAGTCAGTAA CCAGACAGACATTCACCTCTATTGGAAAGCATATAAAGACAGAGAAAAAT GAACAATTGTTTATTGAAGTTTTGTTAGACTATTATATGCATAAAGAGAA GAATAGGTATGTATACTCAATGTACTTTCAAATGATAAACGGTCTAGAGA CCACTAAACGTCAAGAGATTGAAGTAAAACTTGACAAACTAAAAGAAAGC TATTTTGACTTGACCTTTGGAAACCGATTCTTTGAGGATGATGGACTACC CTTCTAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig21212:2..808+

>mRNA_P-wetherbeei_contig21212.1.1 ID=mRNA_P-wetherbeei_contig21212.1.1|Name=mRNA_P-wetherbeei_contig21212.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=801bp|location=Sequence derived from alignment at P-wetherbeei_contig21212:2..808+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGCTGTCAACAGTAATTAAAGACTATAGGAACCTAATTCATCCGGG
GAGAGAAATTAGAAAAAATGAAACATTCAATTTTGAAACTGCTAACGTTG
CATTTAGTCTCCTTAAAATTATTGTGTCTGAACTTCGTGAGAACTATTTA
AAGCTTTATGGTTATACAGCTAAAGACGTAATGCAGAAAGTAACATCGGA
TGACCTGTCGATTAGCATCTTTGACGAACTTATTGAAAAACTTAATCAAT
CAGAAAAAGTAAAACTCTTCAATAGTATTGTTGAGTTTAAAAAATATCTT
GCAAACAAGAGACCATTGCTCGAAAAGATTAAGCCTTACTTGCCAGAAGA
AGTAATTATTGAAAAGCTTACTAACCTGCTGCATCTCATTGAGACTGGTG
ATTCCTCTGAAGTAATTTATTATTACAATCTATTCCACTCTGACATTGGT
ATTCTCGATGATTCATCAATTAACCTAATTACCAAGTATATTCTTTCATA
CATTAAAGAAGAAGGAAACTTGGGAGAGATTCAAAAGTCAGTAACCAGAC
AGACATTCACCTCTATTGGAAAGCATATAAAGACAGAGAAAAATGAACAA
TTGTTTATTGAAGTTTTGTTAGACTATTATATGCATAAAGAGAAGAATAG
GTATGTATACTCAATGTACTTTCAAATGATAAACGGTCTAGAGACCACTA
AACGTCAAGAGATTGAAGTAAAACTTGACAAACTAAAAGAAAGCTATTTT
GACTTGACCTTTGGAAACCGATTCTTTGAGGATGATGGACTACCCTTCTA
A
back to top