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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 2509 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-01_001650.1 |
| Cds size | 1575 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683186219.1012456-UTR-P-wetherbeei_contig2121:520..633 | 1683186219.1012456-UTR-P-wetherbeei_contig2121:520..633 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig2121 521..633 - |
| 1683186219.129691-UTR-P-wetherbeei_contig2121:2425..3246 | 1683186219.129691-UTR-P-wetherbeei_contig2121:2425..3246 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig2121 2426..3246 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683186219.1111524-CDS-P-wetherbeei_contig2121:633..1592 | 1683186219.1111524-CDS-P-wetherbeei_contig2121:633..1592 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig2121 634..1592 - |
| 1683186219.11988-CDS-P-wetherbeei_contig2121:1809..2425 | 1683186219.11988-CDS-P-wetherbeei_contig2121:1809..2425 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig2121 1810..2425 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig2121.1.2 >prot_P-wetherbeei_contig2121.1.2 ID=prot_P-wetherbeei_contig2121.1.2|Name=mRNA_P-wetherbeei_contig2121.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=525bp
MCNAFAVPISRCDGNIFLMLLPDIRCDLWEPTCRRALKFSSLCNHLPLGR
YWFAHCCRNCRRRCFRCCHRRYQVASGALADMHQLVERAFNALQPQHRAW
RAPADPPPGAAVIAAGSSIIDSPAAPKEVEDFVDAAETWLGLYRGIVRFV
LSRQAEFPSVTPPASGEASEGEDSGGGDVPSGGSGTTAARGGNDDVDFVP
SQPGQDASDPGARPKGHAMPEWLSVLIARYEHEHAHSTSPPCHRSLDLHG
GNGNGESGDATDRGGDGIGGGGGSGGDLGGGGGGGGASSGAFSGGVAEGT
PQPWQGGDDALQLSPPSSHSRETSPALLALRLPPRSPPRSPPRAGDAVAA
GIGGAQAPPRPPATRGTDFPIDNLAVFSRFLALLLFHRLPHPMTDAERGA
LALLVGASDDGSGAAVAAVAHQPDVSAPARGVRPYGYWTTRFWRFLRGLT
ELKRCPGQKEADLQWVLAVRAPPRPVSALPSPSLPPGPAAFEPCSERRGG
CHAQGGAVVGGIMDGAIPPVPEGG* back to topmRNA from alignment at P-wetherbeei_contig2121:521..3246- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-wetherbeei_contig2121.1.2 ID=mRNA_P-wetherbeei_contig2121.1.2|Name=mRNA_P-wetherbeei_contig2121.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2726bp|location=Sequence derived from alignment at P-wetherbeei_contig2121:521..3246- (Phaeothamnion wetherbeei SAG_119_79)
CCTCCTCCGGTTGCCTCTTTGGCTTCGCTCGCTGCCGGCGGAGGCATTGC
GGATGCCCTCGCGAACCTCAGAAAGGTTCCACAACCCGGTTAGTGCCGAG
GTGGTGATTGCATGTATCTTTCATCGATGAGAGGAGGGATTCAGCAACCT
TTCTTCCCTCTCATTTGCTCTGCTCCCCATCTCTCACAGAGTTTGGAACA
GCCCCGTTGCCCAGCCGCGAGGAACTCCGCCGTCTGAGCGCCACGAGAAT
ACAGCGTTTTATCGATTCATGCCGCGTCCATCGCCTGGTTCCGACCGAGC
AATTGAGGCTACAAATACCCACCGATGAAGGAGAAAGAGTGGACGCGGCG
ACGCCCCGCGGCATGATGATGCTCTGCGGCGGAATGCGTGGCGGTCGTTT
CACGACCACGCAAATACGCTACATGAAGGTGAGATTTCACAATGCTAAGA
GTTGCATATCGTAACTGCACGAAAAAGACGCTGTCTACTTACGTTCAGGC
TGTTTTCGAGAAAGGGGTTGCGTGCCCGATACGAATCTAGGAAAGGCAAT
CTTTCCTAGAAAGCAGTTGGAAGCGTTGGTTCTTGGATTTGTGGCCCGGA
AAGGTCGACAACCCCAGCCAATGTTTCTTCTGTGTTAAAAGTGCGGCTTC
ATTTCTTCAACTCAAAATACTTTAAGTCAAAGTATGAGTTGGAACTCGTC
CTGGCTTCAATCCTTCTTTTTTCGATGGATGGCGCGTTCCACGTGATCGG
CAACGACGATAAGGTTCATCATCAGTCGGGAAAAAGAACTTGGGCAAAGA
GCACGCAGTGTGTTCACGTTCATGTGCAATGCTTTCGCAGTCCCTATCTC
CCGTTGCGACGGGAATATCTTCTTGATGCTTTTGCCGGATATACGTTGTG
ATTTGTGGGAACCGACGTGTCGGAGAGCTCTTAAGTTCTCAAGCCTTTGC
AATCACCTTCCTCTAGGCCGTTACTGGTTTGCTCACTGCTGCCGTAACTG
CCGCCGCCGCTGTTTCCGCTGCTGCCACCGCCGCTATCAGGTGGCTTCGG
GAGCGCTCGCCGACATGCACCAACTCGTGGAGCGGGCCTTCAATGCCCTC
CAGCCGCAGCATCGAGCGTGGCGCGCCCCTGCGGATCCGCCGCCGGGAGC
CGCCGTCATCGCGGCAGGCAGCAGCATTATAGATAGCCCTGCTGCGCCGA
AAGAGGTGGAGGATTTCGTGGATGCAGCTGAGACGTGGCTGGGGCTATAC
CGCGGAATCGTTCGTTTCGTCCTCTCGCGGCAGGCGGAGTTCCCTTCGGT
AACGCCGCCTGCGTCGGGAGAAGCTTCGGAAGGCGAGGACAGCGGTGGCG
GCGACGTCCCAAGCGGCGGCAGCGGAACAACAGCAGCCAGAGGCGGGAAT
GATGACGTCGACTTCGTGCCCAGCCAGCCCGGTCAAGGTGAGTGTCGGCT
GTGCCTTAGTTTTAACCTCGCCACATCTACCGGAAAGCTCTGACGGGAAG
CTCTTTGGGAAAAAGCAGAAGCAGTTGTCGCGTTTCGTTGCGAGAGAGAG
AATGCCTCAAAAAATGTCCGAGATCCTCTCACATTCCCGGTGTCGTTTCT
CCTTACTGACTTCCCTCCTGCGCGCTGTCTTTATGCGCGTTTTTTTTCCT
GCAGACGCTTCGGACCCCGGTGCTCGGCCGAAGGGTCATGCGATGCCCGA
ATGGCTATCCGTCCTCATCGCTCGCTACGAACACGAGCATGCACACAGCA
CATCGCCGCCGTGCCACCGCTCGCTGGATCTTCACGGCGGCAATGGCAAC
GGCGAGAGCGGCGACGCTACTGACAGAGGCGGCGACGGCATCGGCGGCGG
CGGTGGCAGCGGTGGAGATTTGGGGGGGGGCGGCGGCGGCGGTGGTGCAT
CGTCTGGAGCTTTTTCTGGCGGCGTCGCGGAAGGAACACCACAGCCGTGG
CAAGGTGGCGACGACGCTTTACAGCTGTCGCCGCCGTCGTCACATTCGCG
GGAAACGTCACCAGCGTTATTGGCGCTGCGGCTGCCGCCGCGATCGCCGC
CGCGGTCCCCGCCCAGAGCAGGAGACGCGGTGGCCGCCGGAATCGGAGGA
GCGCAGGCGCCGCCCCGCCCGCCGGCCACGCGCGGCACCGACTTTCCGAT
CGATAACCTCGCCGTCTTCTCGCGGTTCCTGGCGCTCCTCCTGTTCCACC
GACTGCCGCACCCGATGACGGACGCCGAGCGCGGGGCGCTGGCGTTGCTG
GTCGGCGCGAGCGATGACGGGTCGGGCGCAGCGGTGGCCGCCGTGGCGCA
CCAGCCGGACGTGTCGGCGCCAGCACGCGGCGTCCGGCCGTACGGCTACT
GGACGACGCGCTTTTGGCGTTTCCTGCGGGGGCTGACGGAGCTGAAGCGG
TGCCCCGGGCAGAAGGAGGCGGATTTGCAGTGGGTGTTGGCGGTGCGCGC
GCCGCCACGGCCGGTGTCTGCACTGCCGTCGCCGTCGTTGCCGCCGGGGC
CGGCGGCATTTGAGCCATGTTCAGAACGGCGCGGAGGCTGCCATGCTCAG
GGCGGCGCGGTCGTCGGCGGGATCATGGATGGTGCCATTCCTCCTGTGCC
GGAAGGTGGATAAATGGCAGGGAAGGGGCTCCAAGCTGTCTCTTCCGGCC
GGCGAGGACGTGTCTTCTTGTGGCGCTTTGCTGCCAGGCTGTGAAATAAG
CGTTGTACCTGGGAGATGTCATAAGG back to topCoding sequence (CDS) from alignment at P-wetherbeei_contig2121:521..3246- >mRNA_P-wetherbeei_contig2121.1.2 ID=mRNA_P-wetherbeei_contig2121.1.2|Name=mRNA_P-wetherbeei_contig2121.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1575bp|location=Sequence derived from alignment at P-wetherbeei_contig2121:521..3246- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGCAATGCTTTCGCAGTCCCTATCTCCCGTTGCGACGGGAATATCTT
CTTGATGCTTTTGCCGGATATACGTTGTGATTTGTGGGAACCGACGTGTC
GGAGAGCTCTTAAGTTCTCAAGCCTTTGCAATCACCTTCCTCTAGGCCGT
TACTGGTTTGCTCACTGCTGCCGTAACTGCCGCCGCCGCTGTTTCCGCTG
CTGCCACCGCCGCTATCAGGTGGCTTCGGGAGCGCTCGCCGACATGCACC
AACTCGTGGAGCGGGCCTTCAATGCCCTCCAGCCGCAGCATCGAGCGTGG
CGCGCCCCTGCGGATCCGCCGCCGGGAGCCGCCGTCATCGCGGCAGGCAG
CAGCATTATAGATAGCCCTGCTGCGCCGAAAGAGGTGGAGGATTTCGTGG
ATGCAGCTGAGACGTGGCTGGGGCTATACCGCGGAATCGTTCGTTTCGTC
CTCTCGCGGCAGGCGGAGTTCCCTTCGGTAACGCCGCCTGCGTCGGGAGA
AGCTTCGGAAGGCGAGGACAGCGGTGGCGGCGACGTCCCAAGCGGCGGCA
GCGGAACAACAGCAGCCAGAGGCGGGAATGATGACGTCGACTTCGTGCCC
AGCCAGCCCGGTCAAGACGCTTCGGACCCCGGTGCTCGGCCGAAGGGTCA
TGCGATGCCCGAATGGCTATCCGTCCTCATCGCTCGCTACGAACACGAGC
ATGCACACAGCACATCGCCGCCGTGCCACCGCTCGCTGGATCTTCACGGC
GGCAATGGCAACGGCGAGAGCGGCGACGCTACTGACAGAGGCGGCGACGG
CATCGGCGGCGGCGGTGGCAGCGGTGGAGATTTGGGGGGGGGCGGCGGCG
GCGGTGGTGCATCGTCTGGAGCTTTTTCTGGCGGCGTCGCGGAAGGAACA
CCACAGCCGTGGCAAGGTGGCGACGACGCTTTACAGCTGTCGCCGCCGTC
GTCACATTCGCGGGAAACGTCACCAGCGTTATTGGCGCTGCGGCTGCCGC
CGCGATCGCCGCCGCGGTCCCCGCCCAGAGCAGGAGACGCGGTGGCCGCC
GGAATCGGAGGAGCGCAGGCGCCGCCCCGCCCGCCGGCCACGCGCGGCAC
CGACTTTCCGATCGATAACCTCGCCGTCTTCTCGCGGTTCCTGGCGCTCC
TCCTGTTCCACCGACTGCCGCACCCGATGACGGACGCCGAGCGCGGGGCG
CTGGCGTTGCTGGTCGGCGCGAGCGATGACGGGTCGGGCGCAGCGGTGGC
CGCCGTGGCGCACCAGCCGGACGTGTCGGCGCCAGCACGCGGCGTCCGGC
CGTACGGCTACTGGACGACGCGCTTTTGGCGTTTCCTGCGGGGGCTGACG
GAGCTGAAGCGGTGCCCCGGGCAGAAGGAGGCGGATTTGCAGTGGGTGTT
GGCGGTGCGCGCGCCGCCACGGCCGGTGTCTGCACTGCCGTCGCCGTCGT
TGCCGCCGGGGCCGGCGGCATTTGAGCCATGTTCAGAACGGCGCGGAGGC
TGCCATGCTCAGGGCGGCGCGGTCGTCGGCGGGATCATGGATGGTGCCAT
TCCTCCTGTGCCGGAAGGTGGATAA back to top
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