mRNA_P-wetherbeei_contig2120.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2120.2.1
Unique NamemRNA_P-wetherbeei_contig2120.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig2120.2.1 vs. uniprot
Match: A0A836CHB7_9STRA (Ribosomal protein S8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHB7_9STRA)

HSP 1 Score: 225 bits (574), Expect = 4.900e-74
Identity = 112/124 (90.32%), Postives = 117/124 (94.35%), Query Frame = 1 
Query:   37 MVRMSVLADTLKTISNAEKRGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRAGKVVIELTGRINKCGVISPRFDVTLNEFEGWVNNLLPAREFGHIVLTTTYGIMDHEEARRKHTGGK 408
            MVRMSVLADTLKT+SNAEKRGKRQVLIRPSSKVVVKFLQ MQKHGYIGEFEIVDDHRAGK+VIELTGRINKCGVISPRFDV L + E W+ NLLPAR FGHIVL+TTYGIMDHEEARRKHTGGK
Sbjct:    1 MVRMSVLADTLKTLSNAEKRGKRQVLIRPSSKVVVKFLQCMQKHGYIGEFEIVDDHRAGKIVIELTGRINKCGVISPRFDVPLADIEKWMVNLLPARGFGHIVLSTTYGIMDHEEARRKHTGGK 124
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BLAST of mRNA_P-wetherbeei_contig2120.2.1 vs. uniprot
Match: D7G3J4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3J4_ECTSI)

HSP 1 Score: 226 bits (577), Expect = 1.130e-73
Identity = 115/139 (82.73%), Postives = 124/139 (89.21%), Query Frame = 1 
Query:    1 FPIASERNGLP---QMVRMSVLADTLKTISNAEKRGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRAGKVVIELTGRINKCGVISPRFDVTLNEFEGWVNNLLPAREFGHIVLTTTYGIMDHEEARRKHTGGK 408
            F  AS R+ L    +MV+M VLADTLKTISNAEKRGKRQVLIRP SKVVVKFLQVMQK+GYIGEFEIVDDHRAGK+V+ELTGRINKCGVISPRFD+ L + E WVNNLLPAR FGHIVLTTT+GIMDHEEARRKHTGGK
Sbjct:   43 FSCASRRSLLQVSREMVKMGVLADTLKTISNAEKRGKRQVLIRPCSKVVVKFLQVMQKNGYIGEFEIVDDHRAGKIVVELTGRINKCGVISPRFDMPLQDVEKWVNNLLPARGFGHIVLTTTFGIMDHEEARRKHTGGK 181
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BLAST of mRNA_P-wetherbeei_contig2120.2.1 vs. uniprot
Match: A0A7S3PA85_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PA85_9STRA)

HSP 1 Score: 220 bits (560), Expect = 6.670e-72
Identity = 104/124 (83.87%), Postives = 115/124 (92.74%), Query Frame = 1 
Query:   37 MVRMSVLADTLKTISNAEKRGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRAGKVVIELTGRINKCGVISPRFDVTLNEFEGWVNNLLPAREFGHIVLTTTYGIMDHEEARRKHTGGK 408
            MVRMSVLAD LKT+SNAEKRGKRQVL+RPSSKV+VKFLQ MQKHGYIGEFEIVDDHR+GK+V+EL GRINKCGV+SPRFDV + + E WV NLLP+R+FGHIVLTT YGIMDHEEARRKHTGGK
Sbjct:    1 MVRMSVLADALKTMSNAEKRGKRQVLLRPSSKVIVKFLQCMQKHGYIGEFEIVDDHRSGKIVVELNGRINKCGVVSPRFDVQVKDMEKWVGNLLPSRQFGHIVLTTAYGIMDHEEARRKHTGGK 124
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BLAST of mRNA_P-wetherbeei_contig2120.2.1 vs. uniprot
Match: F0Y589_AURAN (Uncharacterized protein n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0Y589_AURAN)

HSP 1 Score: 219 bits (558), Expect = 1.350e-71
Identity = 104/124 (83.87%), Postives = 116/124 (93.55%), Query Frame = 1 
Query:   37 MVRMSVLADTLKTISNAEKRGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRAGKVVIELTGRINKCGVISPRFDVTLNEFEGWVNNLLPAREFGHIVLTTTYGIMDHEEARRKHTGGK 408
            MVRMSVLAD LK+ISNAEKRGKRQVLIRP SKV+VKFLQ MQKHGYIGEFEIVDDHR+GK+VIELTGRINKCGVISPRFDV + + E W+NNLLP+R+FGH+VL+TT+GIMDHEEARRK TGGK
Sbjct:    1 MVRMSVLADCLKSISNAEKRGKRQVLIRPCSKVIVKFLQTMQKHGYIGEFEIVDDHRSGKIVIELTGRINKCGVISPRFDVEIKDMESWINNLLPSRQFGHLVLSTTFGIMDHEEARRKRTGGK 124
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BLAST of mRNA_P-wetherbeei_contig2120.2.1 vs. uniprot
Match: A0A812JFE9_9DINO (RPS15A protein n=2 Tax=Sar TaxID=2698737 RepID=A0A812JFE9_9DINO)

HSP 1 Score: 218 bits (554), Expect = 5.480e-71
Identity = 103/124 (83.06%), Postives = 118/124 (95.16%), Query Frame = 1 
Query:   37 MVRMSVLADTLKTISNAEKRGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRAGKVVIELTGRINKCGVISPRFDVTLNEFEGWVNNLLPAREFGHIVLTTTYGIMDHEEARRKHTGGK 408
            MVRMSVLAD LKTI NAEKRGKRQVL+RP+SKV+VKFLQVMQKHGYIG+FE+VDDHRAGK+V++LTGRINKCGVISPRFDVT+ E E W+++LLP+R+FGHIVLTT+ GIMDHEEARRKHTGGK
Sbjct:    1 MVRMSVLADCLKTIYNAEKRGKRQVLVRPASKVIVKFLQVMQKHGYIGDFELVDDHRAGKIVVQLTGRINKCGVISPRFDVTVPEIEKWISSLLPSRQFGHIVLTTSAGIMDHEEARRKHTGGK 124
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BLAST of mRNA_P-wetherbeei_contig2120.2.1 vs. uniprot
Match: A0A7S1TD80_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TD80_9RHOD)

HSP 1 Score: 217 bits (552), Expect = 1.110e-70
Identity = 100/124 (80.65%), Postives = 117/124 (94.35%), Query Frame = 1 
Query:   37 MVRMSVLADTLKTISNAEKRGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRAGKVVIELTGRINKCGVISPRFDVTLNEFEGWVNNLLPAREFGHIVLTTTYGIMDHEEARRKHTGGK 408
            MVRMSVLAD L+T+SNAEKRGKRQV++RPSSKV++KFLQVMQKHGY+GEFEIVDDHRAGK+V+ LTGRINKCG ISPR+D+ + E E WVNNLLP+R+FG+I+LTT+YGIMDHEEARRKHTGGK
Sbjct:    1 MVRMSVLADALRTMSNAEKRGKRQVMLRPSSKVLIKFLQVMQKHGYLGEFEIVDDHRAGKIVVHLTGRINKCGAISPRYDIKVGEIEKWVNNLLPSRQFGYIMLTTSYGIMDHEEARRKHTGGK 124
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BLAST of mRNA_P-wetherbeei_contig2120.2.1 vs. uniprot
Match: A0A7S0C637_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C637_9STRA)

HSP 1 Score: 216 bits (550), Expect = 2.230e-70
Identity = 99/124 (79.84%), Postives = 116/124 (93.55%), Query Frame = 1 
Query:   37 MVRMSVLADTLKTISNAEKRGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRAGKVVIELTGRINKCGVISPRFDVTLNEFEGWVNNLLPAREFGHIVLTTTYGIMDHEEARRKHTGGK 408
            M RMSVLAD LKTI+NAEKRGKRQVLIRPSSKV+VKFLQVMQ+HGY+GEFEI+DDHR+GK+V+ELTGR+NKCGVISPRFDV  ++ EGW+ NLLP+R+FGH++LTTTYGIM HEEARR+ TGGK
Sbjct:    1 MTRMSVLADCLKTITNAEKRGKRQVLIRPSSKVIVKFLQVMQQHGYVGEFEIIDDHRSGKIVVELTGRLNKCGVISPRFDVPYDDIEGWITNLLPSRQFGHVILTTTYGIMTHEEARRRKTGGK 124
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BLAST of mRNA_P-wetherbeei_contig2120.2.1 vs. uniprot
Match: A0A7S4SDW0_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4SDW0_9DINO)

HSP 1 Score: 216 bits (550), Expect = 2.230e-70
Identity = 103/124 (83.06%), Postives = 116/124 (93.55%), Query Frame = 1 
Query:   37 MVRMSVLADTLKTISNAEKRGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRAGKVVIELTGRINKCGVISPRFDVTLNEFEGWVNNLLPAREFGHIVLTTTYGIMDHEEARRKHTGGK 408
            MVRMSVLAD LK ISNAEKRGKRQVLIRP SKV+VKFLQVMQKHGYIGEFEI+DDHRAGK+VIELTGR+NKCGVISPRFDV LN+ E W  ++LP+R+FGH+VL+TT+GIMDHEEARRK+TGGK
Sbjct:    1 MVRMSVLADCLKNISNAEKRGKRQVLIRPCSKVIVKFLQVMQKHGYIGEFEIIDDHRAGKIVIELTGRLNKCGVISPRFDVPLNKLESWTVDILPSRQFGHLVLSTTFGIMDHEEARRKNTGGK 124
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BLAST of mRNA_P-wetherbeei_contig2120.2.1 vs. uniprot
Match: A0A7S1D1S7_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D1S7_CYCTE)

HSP 1 Score: 215 bits (548), Expect = 4.500e-70
Identity = 104/124 (83.87%), Postives = 117/124 (94.35%), Query Frame = 1 
Query:   37 MVRMSVLADTLKTISNAEKRGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRAGKVVIELTGRINKCGVISPRFDVTLNEFEGWVNNLLPAREFGHIVLTTTYGIMDHEEARRKHTGGK 408
            MVRMSVLAD LK+I+NAEKRGKRQVLIRP+SKVVVKFLQVMQKHGYIGEFE+VDDHR+GK+V++LTGRINKCGVISPRFDVT+ + E WV NLLP+R+FGHIVLTT+ GIMDHEEARRKH GGK
Sbjct:    1 MVRMSVLADCLKSIANAEKRGKRQVLIRPASKVVVKFLQVMQKHGYIGEFELVDDHRSGKIVVQLTGRINKCGVISPRFDVTVADVEKWVANLLPSRQFGHIVLTTSAGIMDHEEARRKHIGGK 124
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BLAST of mRNA_P-wetherbeei_contig2120.2.1 vs. uniprot
Match: A0A485KLL4_9STRA (Aste57867_8878 protein n=32 Tax=Eukaryota TaxID=2759 RepID=A0A485KLL4_9STRA)

HSP 1 Score: 215 bits (547), Expect = 6.400e-70
Identity = 102/124 (82.26%), Postives = 113/124 (91.13%), Query Frame = 1 
Query:   37 MVRMSVLADTLKTISNAEKRGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRAGKVVIELTGRINKCGVISPRFDVTLNEFEGWVNNLLPAREFGHIVLTTTYGIMDHEEARRKHTGGK 408
            MVRMSVLAD LKTI NAEKRGKRQVL+RPSSKV+VKFLQ MQK+GYIGEFEIVDDHR GK+V+EL GRINKCGVISPRFD+   + E W+NNLLP+R+FGHIVL+TTYGIMDH EARRKHTGGK
Sbjct:    1 MVRMSVLADCLKTIYNAEKRGKRQVLVRPSSKVIVKFLQTMQKNGYIGEFEIVDDHRGGKIVVELRGRINKCGVISPRFDIKQQDMEKWINNLLPSRQFGHIVLSTTYGIMDHNEARRKHTGGK 124
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2120.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CHB7_9STRA4.900e-7490.32Ribosomal protein S8 n=1 Tax=Tribonema minus TaxID... [more]
D7G3J4_ECTSI1.130e-7382.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3PA85_9STRA6.670e-7283.87Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
F0Y589_AURAN1.350e-7183.87Uncharacterized protein n=2 Tax=Pelagomonadales Ta... [more]
A0A812JFE9_9DINO5.480e-7183.06RPS15A protein n=2 Tax=Sar TaxID=2698737 RepID=A0A... [more]
A0A7S1TD80_9RHOD1.110e-7080.65Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S0C637_9STRA2.230e-7079.84Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S4SDW0_9DINO2.230e-7083.06Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A7S1D1S7_CYCTE4.500e-7083.87Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A485KLL4_9STRA6.400e-7082.26Aste57867_8878 protein n=32 Tax=Eukaryota TaxID=27... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2120contigP-wetherbeei_contig2120:3285..4631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G3J4
Preferred namerps15a
PFAMsRibosomal_S8
Model size411
Max annot lvl2759|Eukaryota
KEGG koko:K02957
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0009058,GO:0009059,GO:0009987,GO:0010259,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0048856,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons4
Evalue1.86e-74
EggNOG OGsCOG0096@1|root,KOG1754@2759|Eukaryota
Descriptionstructural constituent of ribosome
Cds size411
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186219.0269568-CDS-P-wetherbeei_contig2120:3284..34531683186219.0269568-CDS-P-wetherbeei_contig2120:3284..3453Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2120 3285..3453 +
1683186219.0385404-CDS-P-wetherbeei_contig2120:3601..36601683186219.0385404-CDS-P-wetherbeei_contig2120:3601..3660Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2120 3602..3660 +
1683186219.0482106-CDS-P-wetherbeei_contig2120:3918..40201683186219.0482106-CDS-P-wetherbeei_contig2120:3918..4020Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2120 3919..4020 +
1683186219.0629184-CDS-P-wetherbeei_contig2120:4550..46311683186219.0629184-CDS-P-wetherbeei_contig2120:4550..4631Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2120 4551..4631 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2120.2.1prot_P-wetherbeei_contig2120.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2120 3285..4631 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2120.2.1

>prot_P-wetherbeei_contig2120.2.1 ID=prot_P-wetherbeei_contig2120.2.1|Name=mRNA_P-wetherbeei_contig2120.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=137bp
FPIASERNGLPQMVRMSVLADTLKTISNAEKRGKRQVLIRPSSKVVVKFL
QVMQKHGYIGEFEIVDDHRAGKVVIELTGRINKCGVISPRFDVTLNEFEG
WVNNLLPAREFGHIVLTTTYGIMDHEEARRKHTGGKS
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mRNA from alignment at P-wetherbeei_contig2120:3285..4631+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2120.2.1 ID=mRNA_P-wetherbeei_contig2120.2.1|Name=mRNA_P-wetherbeei_contig2120.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1347bp|location=Sequence derived from alignment at P-wetherbeei_contig2120:3285..4631+ (Phaeothamnion wetherbeei SAG_119_79)
TTCCCAATTGCTTCCGAACGAAATGGTCTTCCGCAGATGGTGCGCATGAG
CGTGCTTGCGGATACCTTGAAGACCATCTCCAACGCGGAGAAGCGGGGAA
AGCGGCAGGTGCTTATCCGACCTTCTTCCAAGGTCGTGGTCAAGTTCCTG
CAGGTCATGCAGAAGCACGGTGAGTTCCTGTAGACCGCTCATTTATGATG
ATTAAAACAAGCTAAGCTCGATCAAAAACCTGTTTCAGCCAATATGAAGA
TGCATTATTCTCATCAGACCACGCGTTGTCCTGTCGGGCAATCGGTGATC
ATTAACGGTATTTGCAGGCTATATCGGCGAGTTCGAGATCGTCGACGACC
ACCGAGCGGGGAAGGTCGTCATCGAGGTGCGCCGAATGTTTGTGTTTGCG
AGTATTGTCTTGACGCGAGATTGCTTGCCGCCACCGTGTTGTAACCCAAC
TGTGGGGATAGTCGATTATCTGCTGTAACGTGGATGGAATTAGGTTTCTT
CGGCTTGTCACCTCACCGAGATTTGCCCTCTTGATCGGCGCCTCCTCTGT
GGGCCGAATTGCCGCTGTCGCCGTCGTGCGACTGTGAGGCTGCTCTGCAT
CATGGTCACTCGACCGGCCATGCGGAATATGCAGCTGACGGGGCGAATCA
ACAAGTGCGGCGTCATCTCGCCGCGCTTCGACGTGACTCTCAACGAGTTT
GAGGGATGGGTAAACAACCTCTTGCCAGCCCGTGAGGTGAGCCAAGGAGA
AGAGAAACTAAAGAAGGAAAGAGAATACTTCTTTAGATTTGCGTTCTATT
GCCGGGACTACGCTGTTCTTCTCTCGGCGGCGTTGTGCCTGAGTTGTTGA
GAGGTTTGTGGATCCTAGTGTGAGTACGATGTGAAGGGGGATAAGTGATG
AAAAAGCACCAGTTTTCTGACACCTCTTGTTTGACGGCACGGCCGCGAAA
TAGCGTAACCGGGCCGATGAACGTACACTCTGGTCTGATATCCCCAATCT
TCAGACGTTGCTGTTCGGGTGTTGGCGGCATCTTTGAAAGTTGGATAAAA
GTTGTGGCGTTCAGAATCTGTTCAGAGTGCCGCCGCCGCATCTTGCTCTC
GCTCACCGCCGCCGCATCGGCGATCAAACTTGAGGGTAATGACCGCATAC
CTGGTCGCTGCGCGCCCCATCAATCTCTTTCCCCCTCCGCCGGCGATCGA
ACGCGGCCGTCCCCATCCCTCGCGGTCCGTCCATCCATCCGTCCCTTCGT
TTCTGCATTCATTCAGTTCGGACACATCGTCCTGACGACGACGTACGGCA
TCATGGACCACGAGGAGGCTCGCCGCAAGCACACCGGAGGAAAGAGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2120:3285..4631+

>mRNA_P-wetherbeei_contig2120.2.1 ID=mRNA_P-wetherbeei_contig2120.2.1|Name=mRNA_P-wetherbeei_contig2120.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig2120:3285..4631+ (Phaeothamnion wetherbeei SAG_119_79)
TTCCCAATTGCTTCCGAACGAAATGGTCTTCCGCAGATGGTGCGCATGAG
CGTGCTTGCGGATACCTTGAAGACCATCTCCAACGCGGAGAAGCGGGGAA
AGCGGCAGGTGCTTATCCGACCTTCTTCCAAGGTCGTGGTCAAGTTCCTG
CAGGTCATGCAGAAGCACGGCTATATCGGCGAGTTCGAGATCGTCGACGA
CCACCGAGCGGGGAAGGTCGTCATCGAGCTGACGGGGCGAATCAACAAGT
GCGGCGTCATCTCGCCGCGCTTCGACGTGACTCTCAACGAGTTTGAGGGA
TGGGTAAACAACCTCTTGCCAGCCCGTGAGTTCGGACACATCGTCCTGAC
GACGACGTACGGCATCATGGACCACGAGGAGGCTCGCCGCAAGCACACCG
GAGGAAAGAGT
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