mRNA_P-wetherbeei_contig2117.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2117.2.1
Unique NamemRNA_P-wetherbeei_contig2117.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig2117.2.1 vs. uniprot
Match: A0A835YTQ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTQ6_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.330e-26
Identity = 71/142 (50.00%), Postives = 82/142 (57.75%), Query Frame = 1 
Query:  607 RPREDPSVSLKDLLRDHRVSRLEGGPL---VEDEVE---GDRLPDLFS--------VGRRGDGRYSGDSAGGPS--SPVKPLLREVRRRATEPSNGMDYFDYGLGGLVKLSVYGFIVLAILWELYLNSPFFERALPPAPIVF 984
            R +  PS  L  LLRD R+ RL G  +   +EDE E   G  LPDL          VG   D  Y      G    S  K LL+ +R+ ATEP    D+FDYGLGGLVK SVY    LA+LWE+YLNSPFFERALPPAP+VF
Sbjct:   24 RGKPTPSTDLPGLLRDRRIGRLSGVDVDRFIEDEAEQPIGTNLPDLSEYLEARQQFVGDESDEEYYRIQRPGQEEESINKALLKGLRKTATEPKRSSDWFDYGLGGLVKRSVYFLGFLAVLWEIYLNSPFFERALPPAPVVF 165
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BLAST of mRNA_P-wetherbeei_contig2117.2.1 vs. uniprot
Match: A0A7S2FXV4_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FXV4_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 4.540e-7
Identity = 38/128 (29.69%), Postives = 64/128 (50.00%), Query Frame = 1 
Query:  613 REDPSVSLKDLLRDHRVSRLEGGPLVEDEVEGD-----RLPDLFSVGRRGDGRYSGDSAGGPSSPVKPLLREVRRRATEPSNGMDYFDYG-LGGLVKLSVYGFIVLAILWELYLNSPFFERALPPAPI 978
            ++D    +  LLRD +  +      +E  +  D     +LPD   V ++       +  GG    V+  L +   + TE SN MD+F+ G +G ++K ++Y F +  +LW++Y+NSP FER   P  I
Sbjct:   69 KKDVDSGVNSLLRDRKAEKYNEDIEIEQFIVNDISPTTKLPDFEEVAKK----EKEEQEGGILDIVESFLPQ---KVTEGSNSMDFFEKGGVGSIIKNTIYAFSIGLVLWDVYINSPLFERKSAPMSI 189
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BLAST of mRNA_P-wetherbeei_contig2117.2.1 vs. uniprot
Match: A0A8J2X510_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X510_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 6.870e-7
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:  835 PSNGMDYFDYGLGGLVKLSVYGFIVLAILWELYLNSPFFERALP 966
            P++  D FDYG+GG+VK +VY     A++WE+Y+NSPFFERA P
Sbjct:  199 PADPTDSFDYGVGGIVKKAVYATAFAAVVWEVYINSPFFERAAP 242
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BLAST of mRNA_P-wetherbeei_contig2117.2.1 vs. uniprot
Match: F0YDV9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDV9_AURAN)

HSP 1 Score: 57.8 bits (138), Expect = 9.490e-6
Identity = 25/46 (54.35%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:  832 EPSNGMDYFDYGLGGLVKLSVYGFIVLAILWELYLNSPFFERALPP 969
            +P + +D FDYG+GG+VK SV+   + A +++LYLNSPFFERA  P
Sbjct:  183 KPDDPLDAFDYGIGGIVKRSVFFLGISAFVFDLYLNSPFFERAAEP 228
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BLAST of mRNA_P-wetherbeei_contig2117.2.1 vs. uniprot
Match: A0A1Z5KK17_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KK17_FISSO)

HSP 1 Score: 53.5 bits (127), Expect = 4.310e-5
Identity = 39/121 (32.23%), Postives = 56/121 (46.28%), Query Frame = 1 
Query:  631 SLKDLLRDHRVSRLEGGPLVEDEVEGDRLPDLFSVGRRG---DGRYSGDSAGGPSSPVKPLLREVRRRATEPSNGMDYFDYGLGGLVKLSVYGFIVLAILWELYLNSPFFERALPPAPIVF 984
            S+ +LLRD  + R        DE   + +PDL  + R G     +     A       KP+  E  R   E +N      +    +++   +  I L I WE+Y+NSPFFERA P APIV+
Sbjct:   12 SIDELLRDRSLER----KFEFDEPVDESIPDLVDLARAGPTVSRKEQRRQAAVARDAAKPVEAEPLRLPFEMTNAKGEIQFNK--VLEAGAWLGIFLLIGWEIYINSPFFERAAPMAPIVY 126
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BLAST of mRNA_P-wetherbeei_contig2117.2.1 vs. uniprot
Match: A0A7S3K5P3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K5P3_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 5.260e-5
Identity = 28/64 (43.75%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:  793 VKPLLREVRRR-ATEPSNGMDYFDYGLGGLVKLSVYGFIVLAILWELYLNSPFFERALPPAPIV 981
            V+ L + V  R    P +  D FDYG G LVK +VY      I++++Y+NSPFFERA P +P++
Sbjct:  105 VETLKKGVEDRFGKRPQDASDAFDYGFGNLVKQTVYLLAGALIIFDIYINSPFFERAAP-SPVI 167
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2117.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835YTQ6_9STRA1.330e-2650.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2FXV4_9STRA4.540e-729.69Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A8J2X510_9STRA6.870e-756.82Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
F0YDV9_AURAN9.490e-654.35Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A1Z5KK17_FISSO4.310e-532.23Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S3K5P3_9STRA5.260e-543.75Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2117contigP-wetherbeei_contig2117:1941..3358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0SIC5
Model size1418
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categorysignal peptide
Exons1
Evalue0.000294
EggNOG OGs2EXUM@1|root,2SZF9@2759|Eukaryota,2XDPA@2836|Bacillariophyta
Cds size675
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186218.1789424-UTR-P-wetherbeei_contig2117:1940..22521683186218.1789424-UTR-P-wetherbeei_contig2117:1940..2252Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2117 1941..2252 +
1683186218.1996396-UTR-P-wetherbeei_contig2117:2927..33581683186218.1996396-UTR-P-wetherbeei_contig2117:2927..3358Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2117 2928..3358 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186218.1919584-CDS-P-wetherbeei_contig2117:2252..29271683186218.1919584-CDS-P-wetherbeei_contig2117:2252..2927Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2117 2253..2927 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2117.2.1prot_P-wetherbeei_contig2117.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2117 2253..2927 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2117.2.1

>prot_P-wetherbeei_contig2117.2.1 ID=prot_P-wetherbeei_contig2117.2.1|Name=mRNA_P-wetherbeei_contig2117.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=225bp
MRRTTVLPPLGLLLGWVPLTASWWNPSAIPATMTRARCVPTKPKHHHTKT
TSIRQRRPPTTLWQSDGGGSDDDGNDRGAGGSSFVEEEEEHERSRPSLRP
REDPSVSLKDLLRDHRVSRLEGGPLVEDEVEGDRLPDLFSVGRRGDGRYS
GDSAGGPSSPVKPLLREVRRRATEPSNGMDYFDYGLGGLVKLSVYGFIVL
AILWELYLNSPFFERALPPAPIVF*
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mRNA from alignment at P-wetherbeei_contig2117:1941..3358+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2117.2.1 ID=mRNA_P-wetherbeei_contig2117.2.1|Name=mRNA_P-wetherbeei_contig2117.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1418bp|location=Sequence derived from alignment at P-wetherbeei_contig2117:1941..3358+ (Phaeothamnion wetherbeei SAG_119_79)
GCATCCCTCACCCCAGCAACGAACAGTGGCGACCATTTCAACCACAATCT
GTGGTTAGTCTATTTACCCCATGATTCCCAAGTCAGAGTCCTCCGCTTTT
GAGACACATTTCCCCAACCGAAGGAATATTGTTTATCGTAGCCTTGACTT
CAACGAGAGTACTCGCCTTTTAAAACTTGTTGGGTCCCCTTGTGCTCTGT
CATCAGCTCGTACAACTCACGCTCCTTTCCTCCATCTTCACGGACGACGT
TTCCAATACTGCAGAAGTCTGCTGAAGGGAATCAATCTTCCAAAGACTTC
GACTTCATTAAAATGAGAAGAACGACGGTGCTGCCGCCGTTGGGGCTTCT
GCTGGGATGGGTGCCATTGACAGCCTCGTGGTGGAATCCTTCTGCGATAC
CGGCAACCATGACAAGAGCGCGGTGTGTTCCTACAAAGCCAAAACACCAC
CACACGAAGACGACTTCAATACGCCAAAGACGACCGCCAACAACGCTCTG
GCAGTCGGATGGTGGCGGCAGCGACGACGACGGAAACGATCGGGGCGCCG
GCGGCAGCAGCTTCGTCGAGGAGGAGGAAGAGCACGAACGGTCGAGGCCG
TCGCTGCGTCCGAGAGAAGACCCGTCTGTATCCTTAAAGGACCTGCTGCG
CGATCACCGTGTCTCGCGGCTCGAGGGCGGCCCGCTCGTTGAGGACGAGG
TCGAAGGGGACCGCCTGCCGGACCTCTTTTCCGTCGGCCGTCGCGGCGAC
GGACGTTACAGTGGCGACAGTGCAGGCGGGCCGTCGTCGCCGGTCAAGCC
GCTGCTGCGCGAGGTACGGCGACGCGCGACGGAGCCGTCGAATGGAATGG
ACTACTTCGACTACGGCCTCGGCGGGTTGGTCAAGCTGTCCGTATACGGG
TTCATCGTTCTGGCGATCCTCTGGGAGCTGTACCTGAACTCGCCGTTCTT
TGAACGGGCGCTGCCGCCGGCGCCGATCGTCTTTTGATCGTTCGTCGCGG
AAGGTGATGGGAAGGTAAACGGTAAGAGCGGCGGAGCCAGCCTGGCCTTT
GGAAGGGTGAAGGGAGAACGAGGCAGGTAGTAAACGTGGGAAGGAAGAGG
TAGCGATGCCGTTGACTAGTGAGGGTGGCACGATCCGATCCAACGCGTCA
ATTCTGTCCTCTGGTTTGTTTGCCTTGGGCAAGATGGTGCGGGGCCGGCT
ACTGCAGTGGAAAAAGAAGTGACAGAAGATGGCGAGCCAGGTAGAAGGTA
GCAGTTTCTTTCCTCCCATCCGTCGTGACATGGCGACAACGACGGTGTCA
CTGGTTATTTCTCCTCTTTCTGCTGGCTGTGTCGAGGAAGATCCATGTCG
ATGAACGTCGTTTCGACGATTACGGTCCTTGCCTACATTCCTCCTCAATA
AGAGCCGCTTTAAGATCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2117:1941..3358+

>mRNA_P-wetherbeei_contig2117.2.1 ID=mRNA_P-wetherbeei_contig2117.2.1|Name=mRNA_P-wetherbeei_contig2117.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=675bp|location=Sequence derived from alignment at P-wetherbeei_contig2117:1941..3358+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGAAGAACGACGGTGCTGCCGCCGTTGGGGCTTCTGCTGGGATGGGT
GCCATTGACAGCCTCGTGGTGGAATCCTTCTGCGATACCGGCAACCATGA
CAAGAGCGCGGTGTGTTCCTACAAAGCCAAAACACCACCACACGAAGACG
ACTTCAATACGCCAAAGACGACCGCCAACAACGCTCTGGCAGTCGGATGG
TGGCGGCAGCGACGACGACGGAAACGATCGGGGCGCCGGCGGCAGCAGCT
TCGTCGAGGAGGAGGAAGAGCACGAACGGTCGAGGCCGTCGCTGCGTCCG
AGAGAAGACCCGTCTGTATCCTTAAAGGACCTGCTGCGCGATCACCGTGT
CTCGCGGCTCGAGGGCGGCCCGCTCGTTGAGGACGAGGTCGAAGGGGACC
GCCTGCCGGACCTCTTTTCCGTCGGCCGTCGCGGCGACGGACGTTACAGT
GGCGACAGTGCAGGCGGGCCGTCGTCGCCGGTCAAGCCGCTGCTGCGCGA
GGTACGGCGACGCGCGACGGAGCCGTCGAATGGAATGGACTACTTCGACT
ACGGCCTCGGCGGGTTGGTCAAGCTGTCCGTATACGGGTTCATCGTTCTG
GCGATCCTCTGGGAGCTGTACCTGAACTCGCCGTTCTTTGAACGGGCGCT
GCCGCCGGCGCCGATCGTCTTTTGA
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