mRNA_P-wetherbeei_contig21150.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21150.1.1
Unique NamemRNA_P-wetherbeei_contig21150.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig21150.1.1 vs. uniprot
Match: A0A7S3XZK9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZK9_HETAK)

HSP 1 Score: 72.8 bits (177), Expect = 4.720e-13
Identity = 38/88 (43.18%), Postives = 53/88 (60.23%), Query Frame = 1 
Query:    1 ELKPFFRALTAMLGLQDGLAGWRVNQGMSKLMIAMEDQSRFLRATEVGVEMVLRLAKAPAAGPAVRRWLRDHAETAAWIPPWLQARQA 264
             LKP +R    +LG+ D LA WRV   M KLM  +EDQ+ F++ATEV +E++LRLAK  A   A   WL +      W+  WLQ +++
Sbjct:  177 NLKPLYRGAMILLGIDDELANWRVRSMMPKLMKTIEDQAAFIKATEVSLELLLRLAKNCARAQA---WLVETRAEHRWVDQWLQDKKS 261
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BLAST of mRNA_P-wetherbeei_contig21150.1.1 vs. uniprot
Match: A0A8K1C2U9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C2U9_PYTOL)

HSP 1 Score: 71.6 bits (174), Expect = 1.440e-12
Identity = 35/91 (38.46%), Postives = 54/91 (59.34%), Query Frame = 1 
Query:    1 ELKPFFRALTAMLGLQDGLAGWRVNQGMSKLMIAMEDQSRFLRATEVGVEMVLRLAKAPAAGPAVRRWLRDHAETAAWIPPWLQARQARAG 273
            ++KP+FR L  +  ++D LA  RVN GM+KL+  M  Q R+ +ATEV ++M++RLAK   +   V  WL+ +  +  WI  WL   +   G
Sbjct: 2713 DVKPYFRTLNTLFKIKDSLASERVNDGMTKLIAVMASQQRYYKATEVSIDMLIRLAKRQTS---VVVWLQANRMSCTWIEKWLSGHRGNNG 2800
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BLAST of mRNA_P-wetherbeei_contig21150.1.1 vs. uniprot
Match: A0A485KJ25_9STRA (Aste57867_7942 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KJ25_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.270e-11
Identity = 36/91 (39.56%), Postives = 53/91 (58.24%), Query Frame = 1 
Query:    1 ELKPFFRALTAMLGLQDGLAGWRVNQGMSKLMIAMEDQSRFLRATEVGVEMVLRLAKAPAAGPAVRRWLRDHAETAAWIPPWLQARQARAG 273
            ELKP+FR L  +L ++D LA  R+   M+KL+  M  Q ++ +ATEV ++MVLR+AK     P V  WL ++    AW   WL + +   G
Sbjct: 2370 ELKPYFRTLRVLLSVEDSLAHDRLVDSMTKLIAIMASQQKYFKATEVTIDMVLRMAKR---NPQVCTWLYENQRAWAWTEKWLLSHRGTDG 2457
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BLAST of mRNA_P-wetherbeei_contig21150.1.1 vs. uniprot
Match: I2CRD3_NANGC (Ubiquitin carboxyl-terminal hydrolase 7 n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRD3_NANGC)

HSP 1 Score: 51.6 bits (122), Expect = 1.570e-5
Identity = 31/89 (34.83%), Postives = 51/89 (57.30%), Query Frame = 1 
Query:    4 LKPFFRALTAMLGLQDGLAGWRVNQGMSKLMIAMEDQSRFLRATEVGVEMVLRLAKAPAAGPAVRRWLRDHAETAAWIPPWLQARQARA 270
            +KP FR+L  +LG++D L   RV+  + +++ A++ Q    RATE+G+ M++RLA+       VR+W  D A   A  P     R+ +A
Sbjct:  999 IKPVFRSLMLVLGVKDSLREERVSLSLPRILAALKTQKSRQRATELGLWMLMRLARE---NMLVRQWFHDGAVVLASTPVASPERREKA 1084
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BLAST of mRNA_P-wetherbeei_contig21150.1.1 vs. uniprot
Match: A0A4D9CLS1_9STRA (USP domain-containing protein n=5 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CLS1_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.600e-5
Identity = 31/89 (34.83%), Postives = 51/89 (57.30%), Query Frame = 1 
Query:    4 LKPFFRALTAMLGLQDGLAGWRVNQGMSKLMIAMEDQSRFLRATEVGVEMVLRLAKAPAAGPAVRRWLRDHAETAAWIPPWLQARQARA 270
            +KP FR+L  +LG++D L   RV+  + +++ A++ Q    RATE+G+ M++RLA+       VR+W  D A   A  P     R+ +A
Sbjct: 3033 IKPVFRSLMLVLGVKDSLREERVSLSLPRILAALKTQKSRQRATELGLWMLMRLARE---NMLVRQWFHDGAVVLASTPVASPERREKA 3118
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BLAST of mRNA_P-wetherbeei_contig21150.1.1 vs. uniprot
Match: A0A7S1UHV9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHV9_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 2.770e-5
Identity = 24/57 (42.11%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    1 ELKPFFRALTAMLGLQDGLAGWRVNQGMSKLMIAMEDQSRFLRATEVGVEMVLRLAK 171
            +LK  FR L A++ L+D L  WRV Q +  ++  + +  R++RATEV +EM+ RL K
Sbjct:  198 DLKKPFRCLFALVALEDSLRAWRVRQVLYNVLEEVYNSVRYMRATEVNLEMLFRLVK 254
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21150.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S3XZK9_HETAK4.720e-1343.18Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8K1C2U9_PYTOL1.440e-1238.46Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A485KJ25_9STRA1.270e-1139.56Aste57867_7942 protein n=1 Tax=Aphanomyces stellat... [more]
I2CRD3_NANGC1.570e-534.83Ubiquitin carboxyl-terminal hydrolase 7 n=2 Tax=Na... [more]
A0A4D9CLS1_9STRA1.600e-534.83USP domain-containing protein n=5 Tax=Monodopsidac... [more]
A0A7S1UHV9_9STRA2.770e-542.11Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21150contigP-wetherbeei_contig21150:87..684 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4787.PITG_19472T0
PFAMsUCH
Model size273
Max annot lvl4776|Peronosporales
KEGG koko:K11853
Hectar predicted targeting categoryother localisation
Exons2
Evalue3e-15
EggNOG OGsCOG5077@1|root,KOG1866@2759|Eukaryota,3QBEJ@4776|Peronosporales
EC3.4.19.12
Descriptionubiquitinyl hydrolase activity
Cds size273
COG categoryO
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186217.8743472-CDS-P-wetherbeei_contig21150:86..1641683186217.8743472-CDS-P-wetherbeei_contig21150:86..164Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21150 87..164 +
1683186217.8892927-CDS-P-wetherbeei_contig21150:489..6841683186217.8892927-CDS-P-wetherbeei_contig21150:489..684Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21150 490..684 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21150.1.1prot_P-wetherbeei_contig21150.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21150 87..684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21150.1.1

>prot_P-wetherbeei_contig21150.1.1 ID=prot_P-wetherbeei_contig21150.1.1|Name=mRNA_P-wetherbeei_contig21150.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
ELKPFFRALTAMLGLQDGLAGWRVNQGMSKLMIAMEDQSRFLRATEVGVE
MVLRLAKAPAAGPAVRRWLRDHAETAAWIPPWLQARQARAG
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mRNA from alignment at P-wetherbeei_contig21150:87..684+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21150.1.1 ID=mRNA_P-wetherbeei_contig21150.1.1|Name=mRNA_P-wetherbeei_contig21150.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=598bp|location=Sequence derived from alignment at P-wetherbeei_contig21150:87..684+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCTGAAGCCGTTCTTCCGCGCGCTGACGGCCATGCTCGGCCTGCAGGA
TGGCCTCGCTGGCTGGCGCGTCAACCAGGTGCTTCCCGCGTTGCTGCCAC
TTGTCTCACTCGCCCTGGATGCCATGTGTCGTTGGAATGTGGGGCAATTA
TAGACATTGCCTTTCTCTTTGCGTTTTTCCCTGTGTTCGGTGGGCATCTT
ATCGTTCCGGAACTCTCTGCGCCGTCCATTCTCACTCCAGAGGAAACGCT
TTGGACCCTTCCATGTGTTTTTAAGCCACTTGTGTCACGTCTTGCCGTGT
CATGCCGCTGCTTCCCCGCGACTGACCACCTCGATGCCGCCGGCCGGTCG
TGCCGCCCACCTTTCCCCTCTCTGCGTCCCTACCTTTCCGTCTTCACAAA
CAGGGCATGAGCAAGCTGATGATCGCGATGGAGGACCAGAGCCGCTTCCT
GCGGGCCACCGAGGTCGGCGTTGAGATGGTGCTTCGCCTCGCCAAGGCGC
CCGCGGCCGGTCCCGCCGTCCGCCGCTGGCTGCGCGACCACGCCGAAACC
GCCGCCTGGATTCCGCCATGGCTGCAAGCCCGCCAGGCGCGCGCCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21150:87..684+

>mRNA_P-wetherbeei_contig21150.1.1 ID=mRNA_P-wetherbeei_contig21150.1.1|Name=mRNA_P-wetherbeei_contig21150.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig21150:87..684+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCTGAAGCCGTTCTTCCGCGCGCTGACGGCCATGCTCGGCCTGCAGGA
TGGCCTCGCTGGCTGGCGCGTCAACCAGGGCATGAGCAAGCTGATGATCG
CGATGGAGGACCAGAGCCGCTTCCTGCGGGCCACCGAGGTCGGCGTTGAG
ATGGTGCTTCGCCTCGCCAAGGCGCCCGCGGCCGGTCCCGCCGTCCGCCG
CTGGCTGCGCGACCACGCCGAAACCGCCGCCTGGATTCCGCCATGGCTGC
AAGCCCGCCAGGCGCGCGCCGGC
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