mRNA_P-wetherbeei_contig21148.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21148.1.1
Unique NamemRNA_P-wetherbeei_contig21148.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig21148.1.1 vs. uniprot
Match: A0A836CKL8_9STRA (DHC_N1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKL8_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 5.310e-20
Identity = 43/62 (69.35%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:    1 MQGKLMEINSEGVLVVNYSERLVKLLRESRQLAELGHTVPANIAKVVADAERFYRYGVMLKK 186
            ++G+LMEI+  GVL VN+SE+LV LLRE RQLAELGHTVP  I+K  ++AERFYRYG+MLKK
Sbjct:  575 LRGRLMEISKAGVLDVNFSEKLVTLLREVRQLAELGHTVPPRISKAASEAERFYRYGIMLKK 636
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BLAST of mRNA_P-wetherbeei_contig21148.1.1 vs. uniprot
Match: A0A8J2SHJ0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SHJ0_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 6.940e-17
Identity = 39/61 (63.93%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:    4 QGKLMEINSEGVLVVNYSERLVKLLRESRQLAELGHTVPANIAKVVADAERFYRYGVMLKK 186
            +GKLMEI+ EG+L+VNYS RLV+LLRE RQL ELG TVP +I +   D E++YR+GV+LKK
Sbjct:  564 KGKLMEISQEGLLIVNYSSRLVQLLREVRQLTELGVTVPDSIKQAAKDGEQYYRFGVVLKK 624
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BLAST of mRNA_P-wetherbeei_contig21148.1.1 vs. uniprot
Match: A0A7S1CH85_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CH85_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.120e-15
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:    1 MQGKLMEINSEGVLVVNYSERLVKLLRESRQLAELGHTVPANIAKVVADAERFYRYGVMLKK 186
            M G+LME + +G ++VNYSE LV LLRE RQL+ELG T+P  +A+   DAE +YRYGV LKK
Sbjct:   99 MTGRLMEFDVDGNMIVNYSESLVILLREVRQLSELGMTLPPKVARAARDAETYYRYGVQLKK 160
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BLAST of mRNA_P-wetherbeei_contig21148.1.1 vs. uniprot
Match: A0A2C9LQ20_BIOGL (DHC_N1 domain-containing protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9LQ20_BIOGL)

HSP 1 Score: 73.6 bits (179), Expect = 2.510e-15
Identity = 37/61 (60.66%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    7 GKLMEIN-SEGVLVVNYSERLVKLLRESRQLAELGHTVPANIAKVVADAERFYRYGVMLKK 186
            GKLME+N  +G L VNYS+RLV LLRE RQL+ +G +VPA I +V   A++FYRYGV+LK+
Sbjct:   64 GKLMELNHKDGKLRVNYSDRLVTLLREVRQLSSIGFSVPAKIQQVAETAQKFYRYGVILKQ 124
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BLAST of mRNA_P-wetherbeei_contig21148.1.1 vs. uniprot
Match: A0A7S4JX84_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JX84_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 3.500e-14
Identity = 34/62 (54.84%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:    1 MQGKLMEINSEGVLVVNYSERLVKLLRESRQLAELGHTVPANIAKVVADAERFYRYGVMLKK 186
            + G+L+EIN +G+L VNYS+RLV L+R+ RQ +ELG ++P +I++ VADA+RF  +GV LKK
Sbjct:  595 LTGELIEINKDGLLQVNYSDRLVMLIRQERQFSELGFSLPTDISRSVADAQRFLGHGVTLKK 656
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BLAST of mRNA_P-wetherbeei_contig21148.1.1 vs. uniprot
Match: A0A6G0UUH7_9BILA (Cytoplasmic dynein 2 heavy chain 1 n=1 Tax=Halicephalobus sp. NKZ332 TaxID=2598192 RepID=A0A6G0UUH7_9BILA)

HSP 1 Score: 72.4 bits (176), Expect = 2.310e-13
Identity = 35/62 (56.45%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:    4 QGKLMEINSE-GVLVVNYSERLVKLLRESRQLAELGHTVPANIAKVVADAERFYRYGVMLKK 186
            +GKLM +  E G+L VNYS+RLV+LLRE RQ+  LG+TVPA I + V   E+FYR+G++LK+
Sbjct:  541 RGKLMVLEKEEGILKVNYSDRLVRLLREVRQIQSLGYTVPAKIQQCVQTGEQFYRHGILLKQ 602
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BLAST of mRNA_P-wetherbeei_contig21148.1.1 vs. uniprot
Match: A0A485LI71_9STRA (Aste57867_21689 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LI71_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.310e-13
Identity = 37/66 (56.06%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:    1 MQGKLMEINSEGVLVVNYSERLVKLLRESRQLAELGHT----VPANIAKVVADAERFYRYGVMLKK 186
            + G+LMEI+  G L VNYSE LV LLR+ RQL ELGH     VP  + +V  +AE++YRYGV LKK
Sbjct:  547 LSGRLMEIDKSGNLTVNYSEFLVTLLRDVRQLMELGHESGKWVPPRVLEVATEAEKYYRYGVTLKK 612
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BLAST of mRNA_P-wetherbeei_contig21148.1.1 vs. uniprot
Match: A0A2T7PP94_POMCA (Cytoplasmic dynein 2 heavy chain 1 n=5 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PP94_POMCA)

HSP 1 Score: 71.2 bits (173), Expect = 5.900e-13
Identity = 35/61 (57.38%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    7 GKLMEIN-SEGVLVVNYSERLVKLLRESRQLAELGHTVPANIAKVVADAERFYRYGVMLKK 186
            G+LME+N  +G + VNYSERLV LLRE RQL  LG ++P+ I  V A A++FYR+GV+LK+
Sbjct:  556 GRLMELNHKDGKMKVNYSERLVTLLREVRQLGSLGFSIPSKIQTVAATAQKFYRHGVILKQ 616
[Close]
BLAST of mRNA_P-wetherbeei_contig21148.1.1 vs. uniprot
Match: A0A3S0ZB75_ELYCH (Cytoplasmic dynein 2 heavy chain 1 n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S0ZB75_ELYCH)

HSP 1 Score: 70.5 bits (171), Expect = 1.100e-12
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    7 GKLMEIN-SEGVLVVNYSERLVKLLRESRQLAELGHTVPANIAKVVADAERFYRYGVMLKK 186
            GKLME+N  +G L VNYSERLV LLRE RQL+ +G  VPA I  V   A++FYR+GV+LK+
Sbjct:  556 GKLMELNHKDGKLRVNYSERLVTLLREVRQLSSIGFAVPAKIQHVADVAQKFYRHGVILKQ 616
[Close]
BLAST of mRNA_P-wetherbeei_contig21148.1.1 vs. uniprot
Match: UPI001B8896A3 (cytoplasmic dynein 2 heavy chain 1-like isoform X2 n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B8896A3)

HSP 1 Score: 69.7 bits (169), Expect = 2.060e-12
Identity = 35/61 (57.38%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    7 GKLMEIN-SEGVLVVNYSERLVKLLRESRQLAELGHTVPANIAKVVADAERFYRYGVMLKK 186
            G+LM++N  +G L VNYS+RLV LLRE RQL+ +G  VPA I +V   A+RFYR+GV+LK+
Sbjct:  557 GRLMDLNHKDGKLRVNYSDRLVTLLREVRQLSSIGFAVPAKIQQVANTAQRFYRHGVILKQ 617
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21148.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CKL8_9STRA5.310e-2069.35DHC_N1 domain-containing protein n=1 Tax=Tribonema... [more]
A0A8J2SHJ0_9STRA6.940e-1763.93Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1CH85_9STRA2.120e-1559.68Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A2C9LQ20_BIOGL2.510e-1560.66DHC_N1 domain-containing protein n=1 Tax=Biomphala... [more]
A0A7S4JX84_9STRA3.500e-1454.84Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A6G0UUH7_9BILA2.310e-1356.45Cytoplasmic dynein 2 heavy chain 1 n=1 Tax=Halicep... [more]
A0A485LI71_9STRA2.310e-1356.06Aste57867_21689 protein n=1 Tax=Aphanomyces stella... [more]
A0A2T7PP94_POMCA5.900e-1357.38Cytoplasmic dynein 2 heavy chain 1 n=5 Tax=Pomacea... [more]
A0A3S0ZB75_ELYCH1.100e-1260.66Cytoplasmic dynein 2 heavy chain 1 n=1 Tax=Elysia ... [more]
UPI001B8896A32.060e-1257.38cytoplasmic dynein 2 heavy chain 1-like isoform X2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21148contigP-wetherbeei_contig21148:41..419 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog27923.ML019114a-PA
PFAMsAAA_5,AAA_6,AAA_7,AAA_8,AAA_9,DHC_N1,DHC_N2,Dynein_heavy,MT
Model size186
Max annot lvl33208|Metazoa
KEGG koko:K10414
KEGG Pathwayko04145,ko04962,ko05132,map04145,map04962,map05132
Hectar predicted targeting categoryother localisation
GOsGO:0002119,GO:0002164,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005929,GO:0006996,GO:0007275,GO:0007610,GO:0007635,GO:0008104,GO:0008150,GO:0009791,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017015,GO:0017111,GO:0022607,GO:0022611,GO:0023051,GO:0023057,GO:0030030,GO:0030031,GO:0030512,GO:0032501,GO:0032502,GO:0033036,GO:0040024,GO:0042221,GO:0042995,GO:0043053,GO:0043226,GO:0044085,GO:0044464,GO:0044782,GO:0048518,GO:0048519,GO:0048523,GO:0048580,GO:0048582,GO:0048583,GO:0048585,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051179,GO:0051239,GO:0051240,GO:0051959,GO:0055115,GO:0060271,GO:0061062,GO:0061063,GO:0061065,GO:0061066,GO:0065007,GO:0070925,GO:0071840,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0097730,GO:0120025,GO:0120031,GO:0120036,GO:1903844,GO:1903845,GO:1905515,GO:2000026
Exons2
Evalue1.79e-13
EggNOG OGsCOG5245@1|root,KOG3595@2759|Eukaryota,38EDS@33154|Opisthokonta,3B9T7@33208|Metazoa
Descriptioncytoplasmic dynein 2 heavy chain
Cds size186
COG categoryZ
BRITEko00000,ko00001,ko03036,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186217.7593076-CDS-P-wetherbeei_contig21148:40..911683186217.7593076-CDS-P-wetherbeei_contig21148:40..91Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21148 41..91 -
1683186217.769089-CDS-P-wetherbeei_contig21148:284..4191683186217.769089-CDS-P-wetherbeei_contig21148:284..419Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21148 285..419 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21148.1.1prot_P-wetherbeei_contig21148.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21148 41..419 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21148.1.1

>prot_P-wetherbeei_contig21148.1.1 ID=prot_P-wetherbeei_contig21148.1.1|Name=mRNA_P-wetherbeei_contig21148.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=62bp
MQGKLMEINSEGVLVVNYSERLVKLLRESRQLAELGHTVPANIAKVVADA
ERFYRYGVMLKK
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mRNA from alignment at P-wetherbeei_contig21148:41..419-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21148.1.1 ID=mRNA_P-wetherbeei_contig21148.1.1|Name=mRNA_P-wetherbeei_contig21148.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=379bp|location=Sequence derived from alignment at P-wetherbeei_contig21148:41..419- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGGGCAAGCTGATGGAGATTAACTCCGAGGGGGTCCTCGTGGTGAA
CTACTCGGAGCGGCTCGTCAAGCTGCTGCGGGAGAGCCGCCAGTTAGCCG
AGCTCGGACATACCGTCCCCGCCAACATCGCCAAGGTTAGTCAACCGACT
CCTGTGCCTATTTGAGGAAGGCGCAGCGCCGCCGCGTTCATCAGTTCTGG
TCTCAGGAGCTCGCAGCCTTAAAGTCGAAGTTTGGTTATCTGTAGTCCTT
GTTGCATTGTCTCTGTTTTTACAAATGCTGATGTAATGTCCTTTCCCTCC
ATATATGCTCATAATGCGCTTACCTCAGGTGGTTGCCGATGCAGAGCGTT
TCTACCGCTACGGAGTCATGCTGAAGAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21148:41..419-

>mRNA_P-wetherbeei_contig21148.1.1 ID=mRNA_P-wetherbeei_contig21148.1.1|Name=mRNA_P-wetherbeei_contig21148.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=186bp|location=Sequence derived from alignment at P-wetherbeei_contig21148:41..419- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGGGCAAGCTGATGGAGATTAACTCCGAGGGGGTCCTCGTGGTGAA
CTACTCGGAGCGGCTCGTCAAGCTGCTGCGGGAGAGCCGCCAGTTAGCCG
AGCTCGGACATACCGTCCCCGCCAACATCGCCAAGGTGGTTGCCGATGCA
GAGCGTTTCTACCGCTACGGAGTCATGCTGAAGAAG
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