mRNA_P-wetherbeei_contig21107.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig21107.1.1 vs. uniprot
Match: A0A4V3US21_9GAMM (LuxR family transcriptional regulator n=1 Tax=Panacagrimonas perspica TaxID=381431 RepID=A0A4V3US21_9GAMM) HSP 1 Score: 259 bits (661), Expect = 5.000e-84 Identity = 131/235 (55.74%), Postives = 170/235 (72.34%), Query Frame = 1
Query: 1 TVFRNARSLDAALDALVDHATMLGFDAIDYGYMPRARRCDGGWNSPDIASRRFPPRWERGWTRYASEDPYLWICYQQNLPLDWNEVKNAAWLSATQRQAIAFIDELGFQDGISVPIHLSDGRFAFVSGVSHAAHGEWRTREQSV-EQLFVLAHAFHASVAQHVGVQGPGA-VTKLTPREREVLAHAAAGRNAPSTARAMHRALETVRRQRKSAMSKLSAQTIAQAVARALALGLI 699
T F ARS D ALD L + LGFDA+DYG+M RAR DG +N+PDIA R +P R GW+R++ DP+L Y + LPLDW VK A WL+ Q++A+A+++ G +DG+SVPIHL DG FAFV+ V+H H WRT++ V +QLFV+AH FHA+VA G++ VTKL+PRERE+L+HAAAG +AP TAR +HR++ETVRRQRKSAM KL A T+AQAVA A+ GL+
Sbjct: 5 TGFHRARSFDVALDRLAEATHALGFDAVDYGFMRRARTPDGQYNAPDIAWRNWPARVRTGWSRFSRVDPFLVASYPRTLPLDWQHVKGAGWLTPLQKEALAYVENFGIEDGLSVPIHLPDGGFAFVTAVAHEGHSAWRTQQARVTDQLFVMAHEFHAAVASRFGLRADTPRVTKLSPREREMLSHAAAGLSAPETARRVHRSVETVRRQRKSAMEKLGAHTVAQAVAHAMGQGLL 239
BLAST of mRNA_P-wetherbeei_contig21107.1.1 vs. uniprot
Match: A0A4V3F785_9GAMM (LuxR family transcriptional regulator n=1 Tax=Panacagrimonas perspica TaxID=381431 RepID=A0A4V3F785_9GAMM) HSP 1 Score: 219 bits (558), Expect = 1.940e-68 Identity = 122/238 (51.26%), Postives = 156/238 (65.55%), Query Frame = 1
Query: 7 FRNARSLDAALDALVDHATMLGFDAIDYGYMPRARRCDGGWNSPDIASRRFPPRWERGWTRYASEDPYLWICYQQNLPLDWNEVKNAAWLSATQRQAIAFIDELGFQDGISVPIHLSDGRFAFVSGVSHAAHGEWRTREQSV-EQLFVLAHAFHASVAQHVGVQGPGAVTKLTP------REREVLAHAAAGRNAPSTARAMHRALETVRRQRKSAMSKLSAQTIAQAVARALALGLI 699
F AR+ +AALD L LGFDA+DYG+MPRAR DG ++SP I SR FP RW RGW R+ +EDP L+ Y + LPLDW +++AAWL+ QR+ FI ELGF DG++VPIHL FAFV+ S +G WR + +V ++LF+LAH+FHA G + P A ++++P RE+ VLA A G NAP AR R++ETVR QRKSAM KL T A AVARA+ LGLI
Sbjct: 7 FEGARTFEAALDQLAGETRALGFDAVDYGFMPRARTPDGRYHSPAIVSRNFPQRWLRGWARFLNEDPLLYGAYPRTLPLDWRNIEDAAWLNPIQREVFGFIHELGFFDGVTVPIHLPGDAFAFVTVASRQRNGAWRASQTAVIDRLFLLAHSFHADQ----GSRSPFA-SRVSPEPLLSVREQAVLALCAEGLNAPGIARRCDRSVETVRLQRKSAMRKLGVHTSAHAVARAVELGLI 239
BLAST of mRNA_P-wetherbeei_contig21107.1.1 vs. uniprot
Match: A0A2S6QZE5_9PROT (HTH-type quorum sensing-dependent transcriptional regulator RpaR n=1 Tax=Alphaproteobacteria bacterium MarineAlpha10_Bin2 TaxID=2013104 RepID=A0A2S6QZE5_9PROT) HSP 1 Score: 130 bits (326), Expect = 3.850e-33 Identity = 75/229 (32.75%), Postives = 119/229 (51.97%), Query Frame = 1
Query: 19 RSLDAALDALVDHATMLGFDAIDYGYMPRARRCDGGWNSPDIASRRFPPRWERGWTRYASEDPYLWICYQQNLPLDWNEVKNAAWLSATQRQAIAFIDELGFQDGISVPIHLSDGRFAFVSGVSHAAHGEWRTR-EQSVEQLFVLAHAFHASVAQ-HVGVQGPGAVTKLTPREREVLAHAAAGRNAPSTARAMHRALETVRRQRKSAMSKLSAQTIAQAVARALALGLI 699
R A+DAL + LGF Y ++ R+ DG +N + R FP W+R W RY DPY C+ + +DW +V+ + L A Q++A +++++G GI+VPIH G F+ VS + ++ +W Q+ E +FV AH F + G KL+ RE EV+ A G+ P A + R+ ET++ K+A +KL A+ A+++A LGL+
Sbjct: 48 RRFGEAMDALAEQMCSLGFPQTLYTHIETPRQPDGAFNPLPLTIRNFPKNWDRLWHRYCRMDPYYHACFNTSYVVDWQKVRAESKLCAVQQEACRYLEDIGMNQGITVPIHHHGGGFSAVSAICSSSEADWPVLFRQASELVFVTAHRFQNKYYDLYTSEHGENHGGKLSARESEVIRWVAYGKTVPEIAMILKRSPETIKYHVKNAYNKLGARNRGHAISQAAKLGLL 276
BLAST of mRNA_P-wetherbeei_contig21107.1.1 vs. uniprot
Match: UPI001BA545BE (autoinducer binding domain-containing protein n=1 Tax=Bradyrhizobium tropiciagri TaxID=312253 RepID=UPI001BA545BE) HSP 1 Score: 122 bits (306), Expect = 1.600e-30 Identity = 80/230 (34.78%), Postives = 122/230 (53.04%), Query Frame = 1
Query: 16 ARSLDAALDALVDHATMLGFDAIDYGYMPRARRCDGGWNSPDIASRRFPPRWERGWTRYASEDPYLWICYQQNLPLDWNEVKNAAWLSATQRQAIAFIDELGFQDGISVPIHLSDGRFAFVSGVSHAAHG-EWRTREQSVEQLFVLAHAF-HASVAQHVGVQGPGAVTKLTPREREVLAHAAAGRNAPSTARAMHRALETVRRQRKSAMSKLSAQTIAQAVARALALGLI 699
A L+AALDAL + LGF + YG R DG + SP + +R FP RW+R W+ DPY C+ LPL W +V++ LS +R + +++ GI++P+H+ +G FAFVS +S +A E + V LF L H F + S+ + Q L+ RE++ L+ AA G+ + A + + ETVR K A++ L+A A+A+A+ L LI
Sbjct: 11 AADLEAALDALHQTLSGLGFSSFAYGMAGTPRAQDGSFTSPIVKTRGFPSRWDRHWSHLC--DPYYRFCFTTTLPLKWIDVQDNERLSTGERACVDHLNDKNLHYGITIPMHMPNGSFAFVSAISESATKYETGSAPTVVNGLFALCHQFQNTSLRRWSWNQAADGKAWLSTREKQCLSLAAQGKTSDDIALILGLSCETVRSHMKRAIAHLNASNRPHAIAKAIQLRLI 238
BLAST of mRNA_P-wetherbeei_contig21107.1.1 vs. uniprot
Match: A0A2S6MMY6_9BRAD (HTH luxR-type domain-containing protein n=10 Tax=Bradyrhizobium TaxID=374 RepID=A0A2S6MMY6_9BRAD) HSP 1 Score: 121 bits (304), Expect = 7.300e-30 Identity = 81/230 (35.22%), Postives = 122/230 (53.04%), Query Frame = 1
Query: 16 ARSLDAALDALVDHATMLGFDAIDYGYMPRARRCDGGWNSPDIASRRFPPRWERGWTRYASEDPYLWICYQQNLPLDWNEVKNAAWLSATQRQAIAFIDELGFQDGISVPIHLSDGRFAFVSGVSHAA-HGEWRTREQSVEQLFVLAHAF-HASVAQHVGVQGPGAVTKLTPREREVLAHAAAGRNAPSTARAMHRALETVRRQRKSAMSKLSAQTIAQAVARALALGLI 699
A L++ALDAL + LGF + YG R DG + SP + +R FP RW+R W+ DPY C+ LP+ W +V+ LSA +R + +++ GI+VP+H+ +G FAFVS +S +A E + V LF L H F + S+ + + Q L+ RE+E L+ AA G+ + A + + ETVR K A+ L+A A+A+A+ L LI
Sbjct: 47 AGDLESALDALHQTLSGLGFSSFAYGMASTPRAQDGSFASPIVKTRAFPSRWDRHWSHLC--DPYYRFCFTTTLPVRWVDVQAHERLSAGERACVDHLNDKNLHYGITVPMHMPNGSFAFVSAISESATRYETGSSPTIVNALFALCHQFQNISLRRWLWHQAADTKAWLSTREKECLSLAAQGKTSDDIALILGLSCETVRSHMKRAIVHLNASNRPHAIAKAIQLRLI 274
BLAST of mRNA_P-wetherbeei_contig21107.1.1 vs. uniprot
Match: UPI001BA5DCFE (autoinducer binding domain-containing protein n=2 Tax=Bradyrhizobium jicamae TaxID=280332 RepID=UPI001BA5DCFE) HSP 1 Score: 118 bits (296), Expect = 7.030e-29 Identity = 80/230 (34.78%), Postives = 119/230 (51.74%), Query Frame = 1
Query: 16 ARSLDAALDALVDHATMLGFDAIDYGYMPRARRCDGGWNSPDIASRRFPPRWERGWTRYASEDPYLWICYQQNLPLDWNEVKNAAWLSATQRQAIAFIDELGFQDGISVPIHLSDGRFAFVSGVS-HAAHGEWRTREQSVEQLFVLAHAFHASVAQHVGVQGPGAVTK-LTPREREVLAHAAAGRNAPSTARAMHRALETVRRQRKSAMSKLSAQTIAQAVARALALGLI 699
A +LD+ALDAL LGF + YG R DG SP + +R FP RW+R W+ DPY C LPL W +V+ LSA +R + +++ GI++P+H+ +G FAFVS +S ++ + + +V LF L H F ++ + A L+ RERE L+ AA G+ + A + + ETVR K A+ L+A A A+A+A+ L I
Sbjct: 27 ATNLDSALDALHQALVDLGFSSFAYGRTAMPRLPDGSLASPLVKTRAFPSRWDRHWSHLC--DPYYRFCLNTTLPLKWIDVQTGERLSAGERACVEHLNDKNLHYGITIPLHMPNGSFAFVSAISENSTTYQDGSSPPAVNALFTLCHHFQNTLLRKWPWNDSTATKAWLSARERECLSLAAQGKTSDDIALILGLSCETVRSHVKRAIMHLNASNRAHAIAKAIQLRFI 254
BLAST of mRNA_P-wetherbeei_contig21107.1.1 vs. uniprot
Match: A0A1T5CUS2_9SPHN (DNA-binding transcriptional regulator, CsgD family n=2 Tax=Rhizorhabdus histidinilytica TaxID=439228 RepID=A0A1T5CUS2_9SPHN) HSP 1 Score: 96.3 bits (238), Expect = 4.400e-20 Identity = 68/231 (29.44%), Postives = 112/231 (48.48%), Query Frame = 1
Query: 16 ARSLDAALDALVDHATMLGFDAIDYGYMPRARRCDGGWNSPDIASRRFPPRWERGWTRYASEDPYLWICYQQNLPLDWNEVKNAA-WLSATQRQAIAFIDELGFQDGISVPIHLSDGRFAFVSGVSHAAHGEW-RTREQSVEQLFVLAHAFHASVAQHVGVQGPGAVTK-LTPREREVLAHAAAGRNAPSTARAMHRALETVRRQRKSAMSKLSAQTIAQAVARALALGLI 699
++S+D A+D L LGF + YG + A G W + R FP RW+R W R+ + DPY + + +W V+N A L Q I++I++LG G++VP+ + + F++ V W +++ L ++A+ F + G GP ++ L+ RE E L +A G+ A + + +TVR K KL A + AVA+A+ LG+I
Sbjct: 70 SKSMDEAMDVLHGAIIELGFPRVVYGCVSIAHLPSGTWVPAPLQVRGFPDRWDRDWPRHRAHDPYAHTAFLKMESTNWTVVQNNADLLDPAQVDCISYINDLGLNPGLTVPLFIPGHHYGFITAVGDGGLEGWDAAADRAGPTLAMIANYFDNFAIRRFG--GPPKESQSLSKRELECLTWSARGKTVEDIAVILDLSADTVRVYLKRVNQKLDAVNRSHAVAKAMCLGMI 298
BLAST of mRNA_P-wetherbeei_contig21107.1.1 vs. uniprot
Match: A0A1G7FP82_9RHOB (LuxR family transcriptional regulator n=8 Tax=Rhodobacterales TaxID=204455 RepID=A0A1G7FP82_9RHOB) HSP 1 Score: 79.0 bits (193), Expect = 5.370e-14 Identity = 63/227 (27.75%), Postives = 101/227 (44.49%), Query Frame = 1
Query: 25 LDAALDALVDHATMLGFDAIDYGYMPRARRCDGGWNSPDIASRR-FPPRWERGWTR--YASEDPYLWICYQQNLPLDWNEVKNA-----AWLSATQRQAIAFIDELGFQDGISVPIHLSDGRFAFVSGVSHAAHGEWR-TREQSVEQLFVLAHAFHASVAQHVGVQGPGAV--TKLTPREREVLAHAAAGRNAPSTARAMHRALETVRRQRKSAMSKLSAQTIAQAV 672
L +DA +GFD + Y Y P P + +R + W+ Y DP + + P W+ + L+ ++++ E G++VPIHL +G FA V+GVS W + +++ L ++AH F+ S + +G +LTPRERE L +A+ G +A TAR + R++ TV +AM KL A+ AV
Sbjct: 18 LGQRVDAAFRQMQGVGFDGMIYDYTPMVSGLGADVPIPSVFEQRNLGDEMRQHWSEDEYIRLDPVQRVAMRSAAPFCWSYDSDIDSIIRPMLTPDIEPVMSYLREREVFSGVTVPIHLPNGDFATVTGVSLGRRQNWSGSTSRAIADLSLIAHLFNQSAVELLGFDHEDGTQEVRLTPRERECLTYASLGNSAKETARIIDRSVPTVVMHLNAAMRKLGARNRTHAV 244
BLAST of mRNA_P-wetherbeei_contig21107.1.1 vs. uniprot
Match: A0A4Q0R4I4_9BRAD (LuxR family transcriptional regulator n=5 Tax=Bradyrhizobium TaxID=374 RepID=A0A4Q0R4I4_9BRAD) HSP 1 Score: 75.5 bits (184), Expect = 1.210e-12 Identity = 69/236 (29.24%), Postives = 105/236 (44.49%), Query Frame = 1
Query: 13 NARSLDAALDALVDHATMLGFDAIDYG---YMPRARRCDGGWNSPDIASRRFPPRWERGWTR--YASEDPYLWICYQQNLPLDWNEVKNAAWLSATQRQAIAFIDELGFQDGISVPIHLSDGRFAFVSGVSHAAHGEWRTREQSVEQLFVLAHAFHASVAQHVGVQGPGAVTKLT--PREREVLAHAAAGRNAPSTARAMHRALETVRRQRKSAMSKLSAQTIAQAVARALALGLI 699
N +SL LV A LGF ++ Y Y P R + +P IAS FP W + + Y + DP + + + P+ W E+ L +++A+ F GF+ GISVP+ + G VS A+ + + S+ L LA FH + +T PRE+E+L HAA GR++ R +H + +V K+ M K+ T A+ A GLI
Sbjct: 11 NTQSLSPLFQMLVSKAGKLGFGSVAYAAVTYAPPKRLRESP--APMIASN-FPSHWSKPYAEHEYGNIDPAIHRSRRFSRPICWEELSARCRLLPEEQRALDFYKIAGFKRGISVPLFAAQGH---VSVALFASESDRADPKGSLLHLAALASQFHIGYGLIAPLPDENRYLNVTFTPREKEILLHAAEGRSSWHIGRLLHISGNSVDFHMKNIMRKMGTSTRTVAIREAYRAGLI 240
BLAST of mRNA_P-wetherbeei_contig21107.1.1 vs. uniprot
Match: A0A6H0J0R8_9GAMM (LuxR family transcriptional regulator n=1 Tax=Aquisalimonas sp. 2447 TaxID=2740807 RepID=A0A6H0J0R8_9GAMM) HSP 1 Score: 70.5 bits (171), Expect = 5.070e-11 Identity = 57/166 (34.34%), Postives = 81/166 (48.80%), Query Frame = 1
Query: 202 DPYLWICYQQNLPLDWNEVKNAAWLSATQRQAIAFIDELGFQDGISVPIHLSDGRFAFVSGVSHAAHGEWRTREQSVEQLFVLAHAFHASVAQHVGVQGPGAVTKLTPREREVLAHAAAGRNAPSTARAMHRALETVRRQRKSAMSKLSAQTIAQAVARALALGLI 699
DP L CY+Q P+ W+E A + + I LG ++G+S G FA +S + E +R + + +LA A+ A + P A LTPRERE L A G +AP+ A + A TV +A+ KL A T QAVARA+ALG++
Sbjct: 61 DPVLLQCYEQAAPVFWHEAFARARRGTAPARYVEAIRALGLRNGVSCGFRGVQGEFAILSLGTGRDDRETHSRLRGIAPQAMLAGAWLKDAASRMVCADPSA--GLTPRERECLLWCAEGCSAPAIALRLGIAERTVVFHLSNAVGKLGASTRQQAVARAVALGVV 224 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21107.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig21107.1.1 >prot_P-wetherbeei_contig21107.1.1 ID=prot_P-wetherbeei_contig21107.1.1|Name=mRNA_P-wetherbeei_contig21107.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=234bp TVFRNARSLDAALDALVDHATMLGFDAIDYGYMPRARRCDGGWNSPDIASback to top mRNA from alignment at P-wetherbeei_contig21107:161..862- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig21107.1.1 ID=mRNA_P-wetherbeei_contig21107.1.1|Name=mRNA_P-wetherbeei_contig21107.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=702bp|location=Sequence derived from alignment at P-wetherbeei_contig21107:161..862- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig21107:161..862- >mRNA_P-wetherbeei_contig21107.1.1 ID=mRNA_P-wetherbeei_contig21107.1.1|Name=mRNA_P-wetherbeei_contig21107.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=702bp|location=Sequence derived from alignment at P-wetherbeei_contig21107:161..862- (Phaeothamnion wetherbeei SAG_119_79)back to top |