mRNA_P-wetherbeei_contig21107.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21107.1.1
Unique NamemRNA_P-wetherbeei_contig21107.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig21107.1.1 vs. uniprot
Match: A0A4V3US21_9GAMM (LuxR family transcriptional regulator n=1 Tax=Panacagrimonas perspica TaxID=381431 RepID=A0A4V3US21_9GAMM)

HSP 1 Score: 259 bits (661), Expect = 5.000e-84
Identity = 131/235 (55.74%), Postives = 170/235 (72.34%), Query Frame = 1
Query:    1 TVFRNARSLDAALDALVDHATMLGFDAIDYGYMPRARRCDGGWNSPDIASRRFPPRWERGWTRYASEDPYLWICYQQNLPLDWNEVKNAAWLSATQRQAIAFIDELGFQDGISVPIHLSDGRFAFVSGVSHAAHGEWRTREQSV-EQLFVLAHAFHASVAQHVGVQGPGA-VTKLTPREREVLAHAAAGRNAPSTARAMHRALETVRRQRKSAMSKLSAQTIAQAVARALALGLI 699
            T F  ARS D ALD L +    LGFDA+DYG+M RAR  DG +N+PDIA R +P R   GW+R++  DP+L   Y + LPLDW  VK A WL+  Q++A+A+++  G +DG+SVPIHL DG FAFV+ V+H  H  WRT++  V +QLFV+AH FHA+VA   G++     VTKL+PRERE+L+HAAAG +AP TAR +HR++ETVRRQRKSAM KL A T+AQAVA A+  GL+
Sbjct:    5 TGFHRARSFDVALDRLAEATHALGFDAVDYGFMRRARTPDGQYNAPDIAWRNWPARVRTGWSRFSRVDPFLVASYPRTLPLDWQHVKGAGWLTPLQKEALAYVENFGIEDGLSVPIHLPDGGFAFVTAVAHEGHSAWRTQQARVTDQLFVMAHEFHAAVASRFGLRADTPRVTKLSPREREMLSHAAAGLSAPETARRVHRSVETVRRQRKSAMEKLGAHTVAQAVAHAMGQGLL 239          
BLAST of mRNA_P-wetherbeei_contig21107.1.1 vs. uniprot
Match: A0A4V3F785_9GAMM (LuxR family transcriptional regulator n=1 Tax=Panacagrimonas perspica TaxID=381431 RepID=A0A4V3F785_9GAMM)

HSP 1 Score: 219 bits (558), Expect = 1.940e-68
Identity = 122/238 (51.26%), Postives = 156/238 (65.55%), Query Frame = 1
Query:    7 FRNARSLDAALDALVDHATMLGFDAIDYGYMPRARRCDGGWNSPDIASRRFPPRWERGWTRYASEDPYLWICYQQNLPLDWNEVKNAAWLSATQRQAIAFIDELGFQDGISVPIHLSDGRFAFVSGVSHAAHGEWRTREQSV-EQLFVLAHAFHASVAQHVGVQGPGAVTKLTP------REREVLAHAAAGRNAPSTARAMHRALETVRRQRKSAMSKLSAQTIAQAVARALALGLI 699
            F  AR+ +AALD L      LGFDA+DYG+MPRAR  DG ++SP I SR FP RW RGW R+ +EDP L+  Y + LPLDW  +++AAWL+  QR+   FI ELGF DG++VPIHL    FAFV+  S   +G WR  + +V ++LF+LAH+FHA      G + P A ++++P      RE+ VLA  A G NAP  AR   R++ETVR QRKSAM KL   T A AVARA+ LGLI
Sbjct:    7 FEGARTFEAALDQLAGETRALGFDAVDYGFMPRARTPDGRYHSPAIVSRNFPQRWLRGWARFLNEDPLLYGAYPRTLPLDWRNIEDAAWLNPIQREVFGFIHELGFFDGVTVPIHLPGDAFAFVTVASRQRNGAWRASQTAVIDRLFLLAHSFHADQ----GSRSPFA-SRVSPEPLLSVREQAVLALCAEGLNAPGIARRCDRSVETVRLQRKSAMRKLGVHTSAHAVARAVELGLI 239          
BLAST of mRNA_P-wetherbeei_contig21107.1.1 vs. uniprot
Match: A0A2S6QZE5_9PROT (HTH-type quorum sensing-dependent transcriptional regulator RpaR n=1 Tax=Alphaproteobacteria bacterium MarineAlpha10_Bin2 TaxID=2013104 RepID=A0A2S6QZE5_9PROT)

HSP 1 Score: 130 bits (326), Expect = 3.850e-33
Identity = 75/229 (32.75%), Postives = 119/229 (51.97%), Query Frame = 1
Query:   19 RSLDAALDALVDHATMLGFDAIDYGYMPRARRCDGGWNSPDIASRRFPPRWERGWTRYASEDPYLWICYQQNLPLDWNEVKNAAWLSATQRQAIAFIDELGFQDGISVPIHLSDGRFAFVSGVSHAAHGEWRTR-EQSVEQLFVLAHAFHASVAQ-HVGVQGPGAVTKLTPREREVLAHAAAGRNAPSTARAMHRALETVRRQRKSAMSKLSAQTIAQAVARALALGLI 699
            R    A+DAL +    LGF    Y ++   R+ DG +N   +  R FP  W+R W RY   DPY   C+  +  +DW +V+  + L A Q++A  +++++G   GI+VPIH   G F+ VS +  ++  +W     Q+ E +FV AH F       +    G     KL+ RE EV+   A G+  P  A  + R+ ET++   K+A +KL A+    A+++A  LGL+
Sbjct:   48 RRFGEAMDALAEQMCSLGFPQTLYTHIETPRQPDGAFNPLPLTIRNFPKNWDRLWHRYCRMDPYYHACFNTSYVVDWQKVRAESKLCAVQQEACRYLEDIGMNQGITVPIHHHGGGFSAVSAICSSSEADWPVLFRQASELVFVTAHRFQNKYYDLYTSEHGENHGGKLSARESEVIRWVAYGKTVPEIAMILKRSPETIKYHVKNAYNKLGARNRGHAISQAAKLGLL 276          
BLAST of mRNA_P-wetherbeei_contig21107.1.1 vs. uniprot
Match: UPI001BA545BE (autoinducer binding domain-containing protein n=1 Tax=Bradyrhizobium tropiciagri TaxID=312253 RepID=UPI001BA545BE)

HSP 1 Score: 122 bits (306), Expect = 1.600e-30
Identity = 80/230 (34.78%), Postives = 122/230 (53.04%), Query Frame = 1
Query:   16 ARSLDAALDALVDHATMLGFDAIDYGYMPRARRCDGGWNSPDIASRRFPPRWERGWTRYASEDPYLWICYQQNLPLDWNEVKNAAWLSATQRQAIAFIDELGFQDGISVPIHLSDGRFAFVSGVSHAAHG-EWRTREQSVEQLFVLAHAF-HASVAQHVGVQGPGAVTKLTPREREVLAHAAAGRNAPSTARAMHRALETVRRQRKSAMSKLSAQTIAQAVARALALGLI 699
            A  L+AALDAL    + LGF +  YG     R  DG + SP + +R FP RW+R W+     DPY   C+   LPL W +V++   LS  +R  +  +++     GI++P+H+ +G FAFVS +S +A   E  +    V  LF L H F + S+ +    Q       L+ RE++ L+ AA G+ +   A  +  + ETVR   K A++ L+A     A+A+A+ L LI
Sbjct:   11 AADLEAALDALHQTLSGLGFSSFAYGMAGTPRAQDGSFTSPIVKTRGFPSRWDRHWSHLC--DPYYRFCFTTTLPLKWIDVQDNERLSTGERACVDHLNDKNLHYGITIPMHMPNGSFAFVSAISESATKYETGSAPTVVNGLFALCHQFQNTSLRRWSWNQAADGKAWLSTREKQCLSLAAQGKTSDDIALILGLSCETVRSHMKRAIAHLNASNRPHAIAKAIQLRLI 238          
BLAST of mRNA_P-wetherbeei_contig21107.1.1 vs. uniprot
Match: A0A2S6MMY6_9BRAD (HTH luxR-type domain-containing protein n=10 Tax=Bradyrhizobium TaxID=374 RepID=A0A2S6MMY6_9BRAD)

HSP 1 Score: 121 bits (304), Expect = 7.300e-30
Identity = 81/230 (35.22%), Postives = 122/230 (53.04%), Query Frame = 1
Query:   16 ARSLDAALDALVDHATMLGFDAIDYGYMPRARRCDGGWNSPDIASRRFPPRWERGWTRYASEDPYLWICYQQNLPLDWNEVKNAAWLSATQRQAIAFIDELGFQDGISVPIHLSDGRFAFVSGVSHAA-HGEWRTREQSVEQLFVLAHAF-HASVAQHVGVQGPGAVTKLTPREREVLAHAAAGRNAPSTARAMHRALETVRRQRKSAMSKLSAQTIAQAVARALALGLI 699
            A  L++ALDAL    + LGF +  YG     R  DG + SP + +R FP RW+R W+     DPY   C+   LP+ W +V+    LSA +R  +  +++     GI+VP+H+ +G FAFVS +S +A   E  +    V  LF L H F + S+ + +  Q       L+ RE+E L+ AA G+ +   A  +  + ETVR   K A+  L+A     A+A+A+ L LI
Sbjct:   47 AGDLESALDALHQTLSGLGFSSFAYGMASTPRAQDGSFASPIVKTRAFPSRWDRHWSHLC--DPYYRFCFTTTLPVRWVDVQAHERLSAGERACVDHLNDKNLHYGITVPMHMPNGSFAFVSAISESATRYETGSSPTIVNALFALCHQFQNISLRRWLWHQAADTKAWLSTREKECLSLAAQGKTSDDIALILGLSCETVRSHMKRAIVHLNASNRPHAIAKAIQLRLI 274          
BLAST of mRNA_P-wetherbeei_contig21107.1.1 vs. uniprot
Match: UPI001BA5DCFE (autoinducer binding domain-containing protein n=2 Tax=Bradyrhizobium jicamae TaxID=280332 RepID=UPI001BA5DCFE)

HSP 1 Score: 118 bits (296), Expect = 7.030e-29
Identity = 80/230 (34.78%), Postives = 119/230 (51.74%), Query Frame = 1
Query:   16 ARSLDAALDALVDHATMLGFDAIDYGYMPRARRCDGGWNSPDIASRRFPPRWERGWTRYASEDPYLWICYQQNLPLDWNEVKNAAWLSATQRQAIAFIDELGFQDGISVPIHLSDGRFAFVSGVS-HAAHGEWRTREQSVEQLFVLAHAFHASVAQHVGVQGPGAVTK-LTPREREVLAHAAAGRNAPSTARAMHRALETVRRQRKSAMSKLSAQTIAQAVARALALGLI 699
            A +LD+ALDAL      LGF +  YG     R  DG   SP + +R FP RW+R W+     DPY   C    LPL W +V+    LSA +R  +  +++     GI++P+H+ +G FAFVS +S ++   +  +   +V  LF L H F  ++ +        A    L+ RERE L+ AA G+ +   A  +  + ETVR   K A+  L+A   A A+A+A+ L  I
Sbjct:   27 ATNLDSALDALHQALVDLGFSSFAYGRTAMPRLPDGSLASPLVKTRAFPSRWDRHWSHLC--DPYYRFCLNTTLPLKWIDVQTGERLSAGERACVEHLNDKNLHYGITIPLHMPNGSFAFVSAISENSTTYQDGSSPPAVNALFTLCHHFQNTLLRKWPWNDSTATKAWLSARERECLSLAAQGKTSDDIALILGLSCETVRSHVKRAIMHLNASNRAHAIAKAIQLRFI 254          
BLAST of mRNA_P-wetherbeei_contig21107.1.1 vs. uniprot
Match: A0A1T5CUS2_9SPHN (DNA-binding transcriptional regulator, CsgD family n=2 Tax=Rhizorhabdus histidinilytica TaxID=439228 RepID=A0A1T5CUS2_9SPHN)

HSP 1 Score: 96.3 bits (238), Expect = 4.400e-20
Identity = 68/231 (29.44%), Postives = 112/231 (48.48%), Query Frame = 1
Query:   16 ARSLDAALDALVDHATMLGFDAIDYGYMPRARRCDGGWNSPDIASRRFPPRWERGWTRYASEDPYLWICYQQNLPLDWNEVKNAA-WLSATQRQAIAFIDELGFQDGISVPIHLSDGRFAFVSGVSHAAHGEW-RTREQSVEQLFVLAHAFHASVAQHVGVQGPGAVTK-LTPREREVLAHAAAGRNAPSTARAMHRALETVRRQRKSAMSKLSAQTIAQAVARALALGLI 699
            ++S+D A+D L      LGF  + YG +  A    G W    +  R FP RW+R W R+ + DPY    + +    +W  V+N A  L   Q   I++I++LG   G++VP+ +    + F++ V       W    +++   L ++A+ F     +  G  GP   ++ L+ RE E L  +A G+     A  +  + +TVR   K    KL A   + AVA+A+ LG+I
Sbjct:   70 SKSMDEAMDVLHGAIIELGFPRVVYGCVSIAHLPSGTWVPAPLQVRGFPDRWDRDWPRHRAHDPYAHTAFLKMESTNWTVVQNNADLLDPAQVDCISYINDLGLNPGLTVPLFIPGHHYGFITAVGDGGLEGWDAAADRAGPTLAMIANYFDNFAIRRFG--GPPKESQSLSKRELECLTWSARGKTVEDIAVILDLSADTVRVYLKRVNQKLDAVNRSHAVAKAMCLGMI 298          
BLAST of mRNA_P-wetherbeei_contig21107.1.1 vs. uniprot
Match: A0A1G7FP82_9RHOB (LuxR family transcriptional regulator n=8 Tax=Rhodobacterales TaxID=204455 RepID=A0A1G7FP82_9RHOB)

HSP 1 Score: 79.0 bits (193), Expect = 5.370e-14
Identity = 63/227 (27.75%), Postives = 101/227 (44.49%), Query Frame = 1
Query:   25 LDAALDALVDHATMLGFDAIDYGYMPRARRCDGGWNSPDIASRR-FPPRWERGWTR--YASEDPYLWICYQQNLPLDWNEVKNA-----AWLSATQRQAIAFIDELGFQDGISVPIHLSDGRFAFVSGVSHAAHGEWR-TREQSVEQLFVLAHAFHASVAQHVGVQGPGAV--TKLTPREREVLAHAAAGRNAPSTARAMHRALETVRRQRKSAMSKLSAQTIAQAV 672
            L   +DA       +GFD + Y Y P           P +  +R       + W+   Y   DP   +  +   P  W+   +        L+      ++++ E     G++VPIHL +G FA V+GVS      W  +  +++  L ++AH F+ S  + +G          +LTPRERE L +A+ G +A  TAR + R++ TV     +AM KL A+    AV
Sbjct:   18 LGQRVDAAFRQMQGVGFDGMIYDYTPMVSGLGADVPIPSVFEQRNLGDEMRQHWSEDEYIRLDPVQRVAMRSAAPFCWSYDSDIDSIIRPMLTPDIEPVMSYLREREVFSGVTVPIHLPNGDFATVTGVSLGRRQNWSGSTSRAIADLSLIAHLFNQSAVELLGFDHEDGTQEVRLTPRERECLTYASLGNSAKETARIIDRSVPTVVMHLNAAMRKLGARNRTHAV 244          
BLAST of mRNA_P-wetherbeei_contig21107.1.1 vs. uniprot
Match: A0A4Q0R4I4_9BRAD (LuxR family transcriptional regulator n=5 Tax=Bradyrhizobium TaxID=374 RepID=A0A4Q0R4I4_9BRAD)

HSP 1 Score: 75.5 bits (184), Expect = 1.210e-12
Identity = 69/236 (29.24%), Postives = 105/236 (44.49%), Query Frame = 1
Query:   13 NARSLDAALDALVDHATMLGFDAIDYG---YMPRARRCDGGWNSPDIASRRFPPRWERGWTR--YASEDPYLWICYQQNLPLDWNEVKNAAWLSATQRQAIAFIDELGFQDGISVPIHLSDGRFAFVSGVSHAAHGEWRTREQSVEQLFVLAHAFHASVAQHVGVQGPGAVTKLT--PREREVLAHAAAGRNAPSTARAMHRALETVRRQRKSAMSKLSAQTIAQAVARALALGLI 699
            N +SL      LV  A  LGF ++ Y    Y P  R  +    +P IAS  FP  W + +    Y + DP +    + + P+ W E+     L   +++A+ F    GF+ GISVP+  + G    VS    A+  +    + S+  L  LA  FH        +        +T  PRE+E+L HAA GR++    R +H +  +V    K+ M K+   T   A+  A   GLI
Sbjct:   11 NTQSLSPLFQMLVSKAGKLGFGSVAYAAVTYAPPKRLRESP--APMIASN-FPSHWSKPYAEHEYGNIDPAIHRSRRFSRPICWEELSARCRLLPEEQRALDFYKIAGFKRGISVPLFAAQGH---VSVALFASESDRADPKGSLLHLAALASQFHIGYGLIAPLPDENRYLNVTFTPREKEILLHAAEGRSSWHIGRLLHISGNSVDFHMKNIMRKMGTSTRTVAIREAYRAGLI 240          
BLAST of mRNA_P-wetherbeei_contig21107.1.1 vs. uniprot
Match: A0A6H0J0R8_9GAMM (LuxR family transcriptional regulator n=1 Tax=Aquisalimonas sp. 2447 TaxID=2740807 RepID=A0A6H0J0R8_9GAMM)

HSP 1 Score: 70.5 bits (171), Expect = 5.070e-11
Identity = 57/166 (34.34%), Postives = 81/166 (48.80%), Query Frame = 1
Query:  202 DPYLWICYQQNLPLDWNEVKNAAWLSATQRQAIAFIDELGFQDGISVPIHLSDGRFAFVSGVSHAAHGEWRTREQSVEQLFVLAHAFHASVAQHVGVQGPGAVTKLTPREREVLAHAAAGRNAPSTARAMHRALETVRRQRKSAMSKLSAQTIAQAVARALALGLI 699
            DP L  CY+Q  P+ W+E    A       + +  I  LG ++G+S       G FA +S  +     E  +R + +    +LA A+    A  +    P A   LTPRERE L   A G +AP+ A  +  A  TV     +A+ KL A T  QAVARA+ALG++
Sbjct:   61 DPVLLQCYEQAAPVFWHEAFARARRGTAPARYVEAIRALGLRNGVSCGFRGVQGEFAILSLGTGRDDRETHSRLRGIAPQAMLAGAWLKDAASRMVCADPSA--GLTPRERECLLWCAEGCSAPAIALRLGIAERTVVFHLSNAVGKLGASTRQQAVARAVALGVV 224          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21107.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4V3US21_9GAMM5.000e-8455.74LuxR family transcriptional regulator n=1 Tax=Pana... [more]
A0A4V3F785_9GAMM1.940e-6851.26LuxR family transcriptional regulator n=1 Tax=Pana... [more]
A0A2S6QZE5_9PROT3.850e-3332.75HTH-type quorum sensing-dependent transcriptional ... [more]
UPI001BA545BE1.600e-3034.78autoinducer binding domain-containing protein n=1 ... [more]
A0A2S6MMY6_9BRAD7.300e-3035.22HTH luxR-type domain-containing protein n=10 Tax=B... [more]
UPI001BA5DCFE7.030e-2934.78autoinducer binding domain-containing protein n=2 ... [more]
A0A1T5CUS2_9SPHN4.400e-2029.44DNA-binding transcriptional regulator, CsgD family... [more]
A0A1G7FP82_9RHOB5.370e-1427.75LuxR family transcriptional regulator n=8 Tax=Rhod... [more]
A0A4Q0R4I4_9BRAD1.210e-1229.24LuxR family transcriptional regulator n=5 Tax=Brad... [more]
A0A6H0J0R8_9GAMM5.070e-1134.34LuxR family transcriptional regulator n=1 Tax=Aqui... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21107contigP-wetherbeei_contig21107:161..862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1120792.JAFV01000001_gene33
PFAMsAutoind_bind,GerE
Model size702
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K07782,ko:K19731
KEGG Pathwayko02020,ko02024,ko02026,map02020,map02024,map02026
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.65e-38
EggNOG OGsCOG2197@1|root,COG2197@2|Bacteria,1R4TP@1224|Proteobacteria,2TVYE@28211|Alphaproteobacteria,370N5@31993|Methylocystaceae
DescriptionAutoinducer binding domain
Cds size702
COG categoryKT
BRITEko00000,ko00001,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186216.5380657-CDS-P-wetherbeei_contig21107:160..8621683186216.5380657-CDS-P-wetherbeei_contig21107:160..862Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21107 161..862 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21107.1.1prot_P-wetherbeei_contig21107.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21107 161..862 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21107.1.1

>prot_P-wetherbeei_contig21107.1.1 ID=prot_P-wetherbeei_contig21107.1.1|Name=mRNA_P-wetherbeei_contig21107.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=234bp
TVFRNARSLDAALDALVDHATMLGFDAIDYGYMPRARRCDGGWNSPDIAS
RRFPPRWERGWTRYASEDPYLWICYQQNLPLDWNEVKNAAWLSATQRQAI
AFIDELGFQDGISVPIHLSDGRFAFVSGVSHAAHGEWRTREQSVEQLFVL
AHAFHASVAQHVGVQGPGAVTKLTPREREVLAHAAAGRNAPSTARAMHRA
LETVRRQRKSAMSKLSAQTIAQAVARALALGLI*
back to top

mRNA from alignment at P-wetherbeei_contig21107:161..862-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21107.1.1 ID=mRNA_P-wetherbeei_contig21107.1.1|Name=mRNA_P-wetherbeei_contig21107.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=702bp|location=Sequence derived from alignment at P-wetherbeei_contig21107:161..862- (Phaeothamnion wetherbeei SAG_119_79)
ACTGTTTTCCGCAATGCGCGCTCGCTCGATGCCGCACTCGATGCGCTGGT CGACCATGCGACCATGCTTGGTTTCGACGCCATCGACTACGGCTATATGC CGCGTGCGCGGCGCTGCGATGGCGGCTGGAACTCACCTGACATCGCATCG CGGCGCTTCCCACCGCGCTGGGAGCGTGGTTGGACGCGCTATGCCAGCGA AGATCCTTACCTGTGGATCTGCTACCAACAGAATCTGCCGCTGGACTGGA ACGAGGTGAAAAACGCGGCGTGGCTGTCGGCGACCCAGCGTCAGGCCATT GCTTTCATTGACGAGTTGGGCTTTCAAGACGGTATCTCGGTGCCCATCCA TCTTTCGGATGGGCGCTTCGCATTTGTCAGCGGCGTCAGTCATGCCGCGC ATGGCGAGTGGCGAACGCGCGAGCAGAGTGTCGAGCAACTGTTCGTGCTC GCCCATGCATTCCATGCTTCCGTAGCACAGCACGTCGGTGTGCAAGGGCC AGGCGCCGTCACAAAACTCACACCGCGCGAGCGAGAAGTGCTGGCCCACG CCGCGGCCGGCCGCAATGCGCCAAGCACGGCAAGGGCCATGCATCGTGCA CTGGAGACCGTACGCCGTCAGCGCAAATCCGCCATGAGCAAGCTCAGCGC GCAAACCATCGCGCAAGCGGTAGCCCGCGCCCTTGCCTTGGGGCTGATCT GA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig21107:161..862-

>mRNA_P-wetherbeei_contig21107.1.1 ID=mRNA_P-wetherbeei_contig21107.1.1|Name=mRNA_P-wetherbeei_contig21107.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=702bp|location=Sequence derived from alignment at P-wetherbeei_contig21107:161..862- (Phaeothamnion wetherbeei SAG_119_79)
ACTGTTTTCCGCAATGCGCGCTCGCTCGATGCCGCACTCGATGCGCTGGT
CGACCATGCGACCATGCTTGGTTTCGACGCCATCGACTACGGCTATATGC
CGCGTGCGCGGCGCTGCGATGGCGGCTGGAACTCACCTGACATCGCATCG
CGGCGCTTCCCACCGCGCTGGGAGCGTGGTTGGACGCGCTATGCCAGCGA
AGATCCTTACCTGTGGATCTGCTACCAACAGAATCTGCCGCTGGACTGGA
ACGAGGTGAAAAACGCGGCGTGGCTGTCGGCGACCCAGCGTCAGGCCATT
GCTTTCATTGACGAGTTGGGCTTTCAAGACGGTATCTCGGTGCCCATCCA
TCTTTCGGATGGGCGCTTCGCATTTGTCAGCGGCGTCAGTCATGCCGCGC
ATGGCGAGTGGCGAACGCGCGAGCAGAGTGTCGAGCAACTGTTCGTGCTC
GCCCATGCATTCCATGCTTCCGTAGCACAGCACGTCGGTGTGCAAGGGCC
AGGCGCCGTCACAAAACTCACACCGCGCGAGCGAGAAGTGCTGGCCCACG
CCGCGGCCGGCCGCAATGCGCCAAGCACGGCAAGGGCCATGCATCGTGCA
CTGGAGACCGTACGCCGTCAGCGCAAATCCGCCATGAGCAAGCTCAGCGC
GCAAACCATCGCGCAAGCGGTAGCCCGCGCCCTTGCCTTGGGGCTGATCT
GA
back to top