mRNA_P-wetherbeei_contig21103.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21103.1.1
Unique NamemRNA_P-wetherbeei_contig21103.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig21103.1.1 vs. uniprot
Match: A0A2W2ATG7_9HYPH (Sel1 repeat family protein n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=A0A2W2ATG7_9HYPH)

HSP 1 Score: 69.7 bits (169), Expect = 1.210e-10
Identity = 46/118 (38.98%), Postives = 60/118 (50.85%), Query Frame = 1 
Query:   37 AASFAVAQTLEEIPFDKQLKLAEVGDEEAQMAVASAYEQGVKPTKKNIVEAARWYREAALKGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMNAIGQAYQNGVGVK 390
            AA+ A AQ+LEE+PFDKQ+ LA+VGD +AQ  V  AYE G K    +  EAARW+R+AAL+GN                                       +M+A+GQAYQ G G +
Sbjct:   14 AAAPAAAQSLEELPFDKQMTLAKVGDVDAQYQVGLAYETG-KGVAVDEAEAARWFRQAALQGNVEAQYHLARLVSRGAKGLKQDYPTALKLYQDAAAKGFAPAMDALGQAYQQGRGAE 130
[Close]
BLAST of mRNA_P-wetherbeei_contig21103.1.1 vs. uniprot
Match: A0A3N5HVI6_9HYPH (Sel1 repeat family protein n=2 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A3N5HVI6_9HYPH)

HSP 1 Score: 65.5 bits (158), Expect = 4.020e-9
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:    7 RFLVFILLQFAASFAVAQTLEEIPFDKQLKLAEVGDEEAQMAVASAYEQGVKPTKKNIVEAARWYREAALKG 222
            R L+ + L F  +   AQTLE +PFDKQL+LA+VGD +AQ AV  AYE G +  + +  EAA+WYR+AAL+G
Sbjct:    5 RALLVLSLLFVPAQLTAQTLETVPFDKQLQLAKVGDVDAQFAVGLAYETG-RSGQPDEAEAAKWYRQAALQG 75
[Close]
BLAST of mRNA_P-wetherbeei_contig21103.1.1 vs. uniprot
Match: UPI0019072524 (sel1 repeat family protein n=1 Tax=Aestuariivirga sp. YIM B02566 TaxID=2800327 RepID=UPI0019072524)

HSP 1 Score: 65.9 bits (159), Expect = 5.850e-9
Identity = 35/62 (56.45%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:   40 ASFAVAQTLEEIPFDKQLKLAEVGDEEAQMAVASAYEQGVKPTKKNIVEAARWYREAALKGN 225
            AS A AQTL+ +PF K+L LA+ GDEEAQ+AVA AYE+G +  K++ +EA++WY +AA +GN
Sbjct:   18 ASLAAAQTLDTLPFSKKLALAKAGDEEAQIAVAMAYEKG-EGAKESKLEASKWYGKAADQGN 78
[Close]
BLAST of mRNA_P-wetherbeei_contig21103.1.1 vs. uniprot
Match: A0A6G6X1I7_9HYPH (Uncharacterized protein n=1 Tax=Nordella sp. HKS 07 TaxID=2712222 RepID=A0A6G6X1I7_9HYPH)

HSP 1 Score: 62.4 bits (150), Expect = 9.210e-8
Identity = 32/59 (54.24%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:   49 AVAQTLEEIPFDKQLKLAEVGDEEAQMAVASAYEQGVKPTKKNIVEAARWYREAALKGN 225
            A AQTL+ +PF K++ LA+ GDEEAQ+AVA AYE+G +  K++ +EA++WY +AA +GN
Sbjct:   22 AFAQTLDTLPFSKKMALAKAGDEEAQIAVAQAYEKG-EGAKESKLEASKWYGKAADQGN 79
[Close]
BLAST of mRNA_P-wetherbeei_contig21103.1.1 vs. uniprot
Match: A0A847ZVD2_9HYPH (Sel1 repeat family protein n=1 Tax=Phyllobacteriaceae bacterium TaxID=1871068 RepID=A0A847ZVD2_9HYPH)

HSP 1 Score: 60.5 bits (145), Expect = 2.880e-7
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 1 
Query:   10 FLVFILLQFAASFAVAQT--LEEIPFDKQLKLAEVGDEEAQMAVASAYEQGVKPTKKNIVEAARWYREAALKGN 225
            F+V +   F A+ A+AQ   LE +   K++KLA+ GD+ AQ+AV   YE G++  KK+  +AARWYREA LKGN
Sbjct:   10 FIVLVAWCFGAALAIAQVMPLEGLSLAKKMKLAKAGDDTAQLAVGMHYELGLE-AKKDAQQAARWYREATLKGN 82
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21103.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2W2ATG7_9HYPH1.210e-1038.98Sel1 repeat family protein n=1 Tax=Aestuariivirga ... [more]
A0A3N5HVI6_9HYPH4.020e-952.78Sel1 repeat family protein n=2 Tax=Hyphomicrobiale... [more]
UPI00190725245.850e-956.45sel1 repeat family protein n=1 Tax=Aestuariivirga ... [more]
A0A6G6X1I7_9HYPH9.210e-854.24Uncharacterized protein n=1 Tax=Nordella sp. HKS 0... [more]
A0A847ZVD2_9HYPH2.880e-748.65Sel1 repeat family protein n=1 Tax=Phyllobacteriac... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21103contigP-wetherbeei_contig21103:311..1042 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size732
Hectar predicted targeting categorysignal peptide
Exons1
Cds size732
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186216.50957-CDS-P-wetherbeei_contig21103:310..10421683186216.50957-CDS-P-wetherbeei_contig21103:310..1042Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21103 311..1042 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21103.1.1prot_P-wetherbeei_contig21103.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21103 311..1042 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21103.1.1

>prot_P-wetherbeei_contig21103.1.1 ID=prot_P-wetherbeei_contig21103.1.1|Name=mRNA_P-wetherbeei_contig21103.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=244bp
MKRFLVFILLQFAASFAVAQTLEEIPFDKQLKLAEVGDEEAQMAVASAYE
QGVKPTKKNIVEAARWYREAALKGNVEAEFRLARLVSKGAKGLTKDLPTA
AKLYEAAANSGHLESMNAIGQAYQNGVGVKADEAKAIEWYRKAAEGKLAA
AQNNLGILYLNGKGVERNVGEAFKFFEMAANQGDGWGLNNLGGMYEMGWG
VAKDRAKAAGFYKQAAEKGIESAQANLVRLAPAAAPVAPVTLN*
back to top

mRNA from alignment at P-wetherbeei_contig21103:311..1042-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21103.1.1 ID=mRNA_P-wetherbeei_contig21103.1.1|Name=mRNA_P-wetherbeei_contig21103.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=732bp|location=Sequence derived from alignment at P-wetherbeei_contig21103:311..1042- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAACGTTTTCTTGTATTCATCCTTTTGCAATTCGCGGCCTCGTTTGC
GGTGGCTCAGACGCTGGAGGAGATTCCCTTCGACAAGCAGTTGAAGCTTG
CCGAAGTCGGCGATGAAGAGGCCCAGATGGCGGTGGCCAGTGCCTATGAG
CAGGGCGTCAAGCCCACGAAAAAGAACATCGTAGAGGCGGCGCGGTGGTA
CCGGGAAGCCGCCCTCAAGGGCAACGTCGAAGCGGAATTCCGCCTGGCCC
GGCTGGTCAGCAAGGGCGCCAAGGGCCTGACCAAGGATTTGCCGACGGCG
GCCAAGCTTTACGAGGCGGCGGCTAACAGCGGCCACCTGGAATCGATGAA
TGCCATTGGCCAAGCCTACCAGAACGGAGTTGGCGTCAAGGCCGATGAAG
CCAAGGCAATCGAATGGTACCGCAAGGCTGCAGAAGGGAAACTTGCTGCT
GCGCAAAACAACTTGGGCATTCTCTATCTCAATGGCAAGGGTGTGGAACG
GAACGTGGGCGAGGCCTTCAAGTTTTTCGAAATGGCGGCCAACCAAGGTG
ATGGCTGGGGCCTGAACAATCTCGGCGGCATGTATGAAATGGGCTGGGGC
GTGGCCAAGGACCGTGCAAAGGCCGCTGGTTTCTACAAGCAGGCGGCTGA
AAAGGGCATTGAGTCCGCCCAAGCCAATTTGGTGCGGCTTGCGCCGGCAG
CGGCCCCGGTTGCGCCGGTCACGTTAAATTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig21103:311..1042-

>mRNA_P-wetherbeei_contig21103.1.1 ID=mRNA_P-wetherbeei_contig21103.1.1|Name=mRNA_P-wetherbeei_contig21103.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=732bp|location=Sequence derived from alignment at P-wetherbeei_contig21103:311..1042- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAACGTTTTCTTGTATTCATCCTTTTGCAATTCGCGGCCTCGTTTGC
GGTGGCTCAGACGCTGGAGGAGATTCCCTTCGACAAGCAGTTGAAGCTTG
CCGAAGTCGGCGATGAAGAGGCCCAGATGGCGGTGGCCAGTGCCTATGAG
CAGGGCGTCAAGCCCACGAAAAAGAACATCGTAGAGGCGGCGCGGTGGTA
CCGGGAAGCCGCCCTCAAGGGCAACGTCGAAGCGGAATTCCGCCTGGCCC
GGCTGGTCAGCAAGGGCGCCAAGGGCCTGACCAAGGATTTGCCGACGGCG
GCCAAGCTTTACGAGGCGGCGGCTAACAGCGGCCACCTGGAATCGATGAA
TGCCATTGGCCAAGCCTACCAGAACGGAGTTGGCGTCAAGGCCGATGAAG
CCAAGGCAATCGAATGGTACCGCAAGGCTGCAGAAGGGAAACTTGCTGCT
GCGCAAAACAACTTGGGCATTCTCTATCTCAATGGCAAGGGTGTGGAACG
GAACGTGGGCGAGGCCTTCAAGTTTTTCGAAATGGCGGCCAACCAAGGTG
ATGGCTGGGGCCTGAACAATCTCGGCGGCATGTATGAAATGGGCTGGGGC
GTGGCCAAGGACCGTGCAAAGGCCGCTGGTTTCTACAAGCAGGCGGCTGA
AAAGGGCATTGAGTCCGCCCAAGCCAATTTGGTGCGGCTTGCGCCGGCAG
CGGCCCCGGTTGCGCCGGTCACGTTAAATTAG
back to top