mRNA_P-wetherbeei_contig2109.2.4 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2109.2.4
Unique NamemRNA_P-wetherbeei_contig2109.2.4
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig2109.2.4 vs. uniprot
Match: A0A836CC18_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC18_9STRA)

HSP 1 Score: 233 bits (593), Expect = 8.480e-68
Identity = 183/453 (40.40%), Postives = 240/453 (52.98%), Query Frame = 1
Query:    1 RIHVGSLHYALQEADIRAVFSPFGTIKKVSMTIDQATGRHKGFCFLEFETPESAETALTSMNGFELAGRQITVGRPHDSSQAPAQPAAIGNVAATASAMLAAGGMLPI----------------GAG---GAAAAVGAG--------PRFVPVGNTKVYIGNVAPVVTAEMLRAVFQPFGLVIGCEMVSDPANPGQHRGFGFVQFLEEKLAKVALETMNGFDLAGRSLRVAWATDQHKPLPLLPGVVLPNQPPA---QPVSAADAVAAALRGAPNVPMPTVSSIAPPAPAAAPXXXXXXXXXXXXXXXXXXXXXXSLPFGKSPASPLPLPPPTNGAPAATAAQIAPAATPAXXXAGAAAPERSPCVVLDNMVGPEDLEDPSLKDEIGEECAKYGPVERVEAVLRPPPSIGEA--RVFVLFATDADAAAAVSRLHERYFGGRVVQARLYDAAAF 1263
            RI++GSL+Y LQE+DI A+F  FG I+ V M+ D ATG+HKGFCF+E+  P SAE AL SMNGFELAGR I VGRP+  S A            T  A +A  GM                   G G      AA+ A         P+   VG TK+++GNV   + A+ ++ +F PFG V+ CE+V+DP NPG+HRG+GF+QF  E +A  A++ M GF+LAGR LRV+WAT Q K           +  PA   QP+    A+AAAL  A              APA A XXXXXXXXXXXXX                      + PP+                               CV+L N+V  E++ DP LKDE+ EE A+YG VE +E + +   ++GE   RVFVL+A +  A AA+++L++RYFGG VV+A LYD  AF
Sbjct:  120 RIYIGSLYYELQESDILAIFGAFGQIRAVDMSKDPATGKHKGFCFIEYMEPASAEAALNSMNGFELAGRPIKVGRPNTGSTA------------TPGAGMAMPGMTXXXXXXXXXXXXXXXXXXGMGVSPSIEAALQAALTPPAPQQPQVQLVGQTKLFVGNVDLSIPADAIKQIFSPFGQVLTCELVADPENPGKHRGYGFIQFTSEPIASSAMQAMEGFELAGRPLRVSWATSQPK-----------STAPAGTGQPIDIQAALAAALGQA--------------APAVAAXXXXXXXXXXXXXTA--------------------MKPPSR------------------------------CVLLRNLVSAEEVGDPDLKDEVLEEAARYGQVESLEIIAQSG-TVGETGVRVFVLYANEVQARAAIAKLNKRYFGGNVVKATLYDVDAF 484          
BLAST of mRNA_P-wetherbeei_contig2109.2.4 vs. uniprot
Match: D7FWX1_ECTSI (RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWX1_ECTSI)

HSP 1 Score: 219 bits (558), Expect = 6.160e-61
Identity = 177/442 (40.05%), Postives = 234/442 (52.94%), Query Frame = 1
Query:    1 RIHVGSLHYALQEADIRAVFSPFGTIKKVSMTIDQATGRHKGFCFLEFETPESAETALTSMNGFELAGRQITVGRPHDSSQAPAQ-------PAAI---GNVAATAS-AMLAAGGMLPIGAGGAAAAVGAGPRFVPVGNTKVYIGNVAPVVTAEMLRAVFQPFGLVIGCEMVSDPANPGQHRGFGFVQFLEEKLAKVALETMNGFDLAGRSLRVAWATDQHKPLPLLPGVVLPNQPPAQPVSAADAVAAALRGAPNVPMPTVSSIAPPAPAAAPXXXXXXXXXXXXXXXXXXXXXXSLPFGKSPASPLPLPPPTNGAPAATAAQIAPAATPAXXXAGAAA--PERSPCVVLDNMVGPEDLEDPSLKDEIGEECAKYGPVERVEAVLR--PPPSIGEARVFVLFATDADAAAAVSRLHERYFGGRVVQARLYDAAAFLRGDLD 1281
            RI+VGSLHY L+E+DI ++F+ FG +K V M+ D +TGRHKGFCF+E+   +SA+ AL +MNGFELAGR I VGRP ++    A        PAA+   G  A  A  +  AAGG    G          G    P   TK+Y+GNV P +T EM++ VF+PFG+V+G EMV DP+NPG H+GFGF+Q+ +E +A+  ++TM+ F+LAGR+LRVAWA DQ KP        L   PP   +SAA A                            XXXXXXXXXXXXXXX           G    +        NG+          A        G A   P  S C+ L NM+GPED +D   K EI EE    G V ++    +     ++   RVFV+F+   +   A+ ++H R+F GR VQA  YD   F +G LD
Sbjct:  288 RIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKSADAALRAMNGFELAGRAIKVGRPLNTDSGVAGGIEGMGLPAAMQLPGMAAFMAQHSTSAAGGAQGSGVAAEQLKAAMGMTTAPA-QTKIYVGNVEPHITTEMIKTVFEPFGMVVGAEMVQDPSNPGNHKGFGFIQYAQESVARTVIDTMSSFELAGRTLRVAWAQDQSKP-------ALSVLPPG--LSAAGAAXXXXXXXXXX-----------------XXXXXXXXXXXXXXXRLTAASRLQGLGNGGVA-------NNGSNGGVGVVGGSAGRMQGGGVGGATGVPGVSRCMCLVNMLGPEDADDEDTKAEILEEFGTCGTVLQLHVHKQRGSDGAVWAVRVFVVFSDPNETVTAIRKMHGRFFAGRQVQAAAYDHGMFSQGLLD 695          
BLAST of mRNA_P-wetherbeei_contig2109.2.4 vs. uniprot
Match: A0A0U9HK97_KLENI (Putative RNA recognition motif containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HK97_KLENI)

HSP 1 Score: 181 bits (460), Expect = 2.100e-48
Identity = 155/469 (33.05%), Postives = 216/469 (46.06%), Query Frame = 1
Query:    1 RIHVGSLHYALQEADIRAVFSPFGTIKKVSMTIDQATGRHKGFCFLEFETPESAETALTSMNGFELAGRQITVGRPHD------------SSQAPAQPAAIGNVAATASAM---------------------------LAAGGMLPIGAGGAAAAVGAGPRFVPVGNTKVYIGNVAPVVTAEMLRAVFQPFGLVIGCEMVSDPANPGQHRGFGFVQFLEEKLAKVALETMNGFDLAGRSLRVAWATDQHKPLPLLPGVVLPNQPPAQPVSAADAVAAALRGAPNVPMPTVSSIAPPAPAAAPXXXXXXXXXXXXXXXXXXXXXXSLPFGKSPASPLPLPPPTNGAPAATAAQIAPAATPAXXXAGAAAPERSPCVVLDNMVGPEDLEDPSLKDEIGEECAKYGPVERV----EAVLRPPPSIGEARVFVLFATDADAAAAVSRLHERYFGGRVVQARLYDAAAFLRGDL 1278
            RI+VGS++Y L E+DI   FS FG+I K+ M  D AT +HKGFCF+EF + E+AE AL +MN F LAGR++ VGRPH+            +   P   AA       A A+                           L A G+LP     A  A+    R     + ++Y+G++   ++ E ++AVFQ FG V  C ++ +P   G+H+G+GF++F + + AK A+++MNGFDL GR L+V WA              LP  PP                 PN  +P +    PP PA  P                         F  +P  P                         XXX     P R  CV+L NMVGPE++ D  L+ E+ EEC+K+G VERV    E        I + ++FVLF T ++A  A   L +R+FGGR ++A  YD A F R DL
Sbjct:   89 RIYVGSIYYELNESDIILAFSAFGSIHKIDMPRDAATAKHKGFCFIEFHSSEAAENALNTMNEFVLAGRKLKVGRPHNIAGMPGGIVVSTTPPTPQAQAAFKQAQQQAQAISAQLSLRQQQQXXLLIAQQQQALENPHLVAQGLLPPPNPAAIQALLNPSRP----DARIYVGSIYYEISEEDIKAVFQAFGQVKSCNLIPNPET-GKHKGYGFIEFEQPEAAKAAIDSMNGFDLGGRQLKVGWAAAN---------AGLPTPPPL----------------PNPNLPNMPFGMPPMPAVLPPVT----------------------FSPNPFQPX-----------XXXXXXXXXXXXXXXXXXGLKPTR--CVLLKNMVGPEEV-DADLEGEVTEECSKHGEVERVVIYQEQASARKDDI-QVKIFVLFRTVSEAQRAHRSLDKRWFGGRQIEANFYDEARFKRQDL 490          
BLAST of mRNA_P-wetherbeei_contig2109.2.4 vs. uniprot
Match: A0A7S3GHK6_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GHK6_9EUKA)

HSP 1 Score: 176 bits (445), Expect = 4.500e-46
Identity = 140/432 (32.41%), Postives = 204/432 (47.22%), Query Frame = 1
Query:    1 RIHVGSLHYALQEADIRAVFSPFGTIKKVSMTIDQATGRHKGFCFLEFETPESAETALTSMNGFELAGRQITVGRPHDSSQAPAQPAAIGNVAATASAMLAAGGMLPIGAGGAAAAVGAGPRFVPVGNTKVYIGNVAPVVTAEMLRAVFQPFGLVIGCEMVSDPANPGQHRGFGFVQFLEEKLAKVALETMNGFDLAGRSLRVAWATDQHKPLPLLPGVVLP---NQPPAQPVSAADAVAAA-LRGAPNVPMPTVSSIAPPAPAAAPXXXXXXXXXXXXXXXXXXXXXXSLPFGKSPASPLPLPPPTNGAPAATAAQIAPAATPAXXXAGAAAPERSPCVVLDNMVGPEDLEDPSLKDEIGEECAKYGPVERVEAVLRPPPSIGE-ARVFVLFATDADAAAAVSRLHERYFGGRVVQARLYDAAAFLRGDLD 1281
            R++VGS+H+AL EADIRA F   G I    M  D AT RHKG+CF+E+ T E A+TA+ +M+GFELAGR I VGRPHD++   + P +    AA A+AM              A      P      +++VY+GN+   +    LRAVF  FG ++  +++ +    G+H+G+GF++F     A+ A++TMNGF+LAGRSLRV++ T    P  +  G  +     Q   Q +  A A+AAA +  A      T  S+                                L  G                                  AG    + + C+ + NM+G  +  D  L+ E+ +EC+K+G VE V    R  P  G   +VFVLF T   A  A+  L  R+F GR ++A+L+  A F +G  D
Sbjct:  146 RVYVGSIHFALTEADIRACFETLGKIVSTEMPKDPATMRHKGYCFVEYSTVEEADTAIKTMSGFELAGRPIRVGRPHDATINDSAPVSAAAEAAKAAAM--------------AINQQISPAKPITNSSRVYVGNIFWNIGEPELRAVFATFGEIVSVQLIPNHET-GKHKGYGFIEFTSAASAEEAIKTMNGFELAGRSLRVSYPTGGGAPATVGGGGAMNAMGGQAGQQNLGLAGAIAAAAVFKAQQAMSDTAQSL-------------QDEEDMEIKADQRYALMQKLRAG----------------------------------AGLGG-DMAKCIAISNMLGSLNDIDDDLQMEVKQECSKFGEVEEVRVHHRQDPVKGFIGKVFVLFKTPQGANTAIPALTGRFFDGRRIEAQLFSEALFKKGQFD 514          
BLAST of mRNA_P-wetherbeei_contig2109.2.4 vs. uniprot
Match: A0A7S2AH99_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AH99_9STRA)

HSP 1 Score: 175 bits (444), Expect = 8.100e-46
Identity = 159/463 (34.34%), Postives = 216/463 (46.65%), Query Frame = 1
Query:    1 RIHVGSLHYALQEADIRAVFSPFGTIKKVSMTIDQATGRHKGFCFLEFETPESAETALTSMNGFELAGRQITVGRPHDSSQAPAQPAAIGNVAATA--------------SAMLAAGGMLPIGAGGAAAAVGA---------GPRFVPVG---------NTKVYIGNVAPVVTAEMLRAVFQPFGLVIGCEMVSDPANPGQHRGFGFVQFLEEKLAKVALETMNGFDLAGRSLRVAWA-----TDQHKPLPLLPGVVLPNQPPAQPVSAADAVAAALRGAPNVPMPTVSSIAPPAPAAAPXXXXXXXXXXXXXXXXXXXXXXSLPFGKSPASPLPLPPPTNGAPAATAAQIAPAATPAXXXAGAAAPERSP-CVVLDNMVGPEDLEDPSLKDEIGEECAKYGPVERVEAVLRPPPSIGEARVFVLFATDADAAAAVSRLHERYFGGRVVQARLYDAAAFLRGD 1275
            RI+VGSLHY L E DIR VF  FG I +V+M+ + ATG+ KG+CF+E+E P SA  AL +MNGFELAGRQI VG+P D +       A G+++                 +AML A  ++    G A  A  A         G      G           ++Y+GN++  +  E L+ VF+PFG +   +++ DPA   +HRG+GF+Q+   + A  A+  MN F+L GR L+V WA     T     +     V+ P     Q  + A  +AA      N                             XXXXXXXXXX SLP   S                + A          XXX      ++ P CV+L NMV  E+  D  L  EI EE  KYG VE V+  +     +    +F+L+   + AA A S LH RYFGGR++ A LYD   F+ GD
Sbjct:  112 RIYVGSLHYDLAEHDIRGVFEAFGKITEVTMSYEPATGKSKGYCFIEYENPNSANQALQAMNGFELAGRQIKVGKP-DGAPGAGMMGASGSLSFATPTNSGPAIQAVDRNTAMLQAHALVQAALGKAQPATNALTLMDKASTGTDTAAAGVVANQSSDTRNRIYVGNISTDIGPEALQTVFEPFGRITDVQILPDPAGVAKHRGYGFIQYETNRAAIEAVSQMNDFELLGRRLKVNWANSATTTLNQSQVSASTAVLTPQMLAFQQSTVAQQLAALRTATGNT----------------------------XXXXXXXXXXPSLPDQDS----------------SPAVSXXXXXXXXXXXXXXXXDQQLPRCVLLKNMVSEEEAADSELAGEIEEEGTKYGKVESVKVHMAEKQGV---LIFLLYEAASSAARAQSTLHRRYFGGRIISAELYDHGKFIAGD 526          
BLAST of mRNA_P-wetherbeei_contig2109.2.4 vs. uniprot
Match: A0A6P5WD02_9EIME (poly(U)-binding-splicing factor PUF60 n=1 Tax=Cyclospora cayetanensis TaxID=88456 RepID=A0A6P5WD02_9EIME)

HSP 1 Score: 168 bits (426), Expect = 3.450e-43
Identity = 168/480 (35.00%), Postives = 244/480 (50.83%), Query Frame = 1
Query:    1 RIHVGSLHYALQEADIRAVFSPFGTIKKVSMTIDQATGRHKGFCFLEFETPESAETALTSMNGFELAGRQITVGRPH-----DSSQAPAQP------------AAIGNVAATASAMLAAGGMLPIGAG-------GAAAAVGAGPRFVPV-------GNTKVYIGNVAPVVTAEMLRAVFQPFGLVIGCEMVSDPANPGQHRGFGFVQFLEEKLAKVALETMNGFDLAGRSLRVAWATDQHKPL--------------PLLPGVVLPNQ------PPAQPVSAADAVAAALRGAPNV-PMPTVSSIAPPAPAAAPXXXXXXXXXXXXXXXXXXXXXXSLPFGKSPASPLPLPPPTNGAPAATAAQIAPAATPAXXXAGAAAPERSPCVVLDNMVGPEDLEDPSLKDEIGEECAKYGPVERVEAVLRPPPSIGEARVFVLFATDADAAAAVSRLHERYFGGRVVQARLYDAAAFLRGDLDL 1284
            RI+VGSL Y L E +I++VF  FGT+  V M   +   R KGFCF+E+ +PE+A+ AL++M+ F L GR I VGRP         Q  A+P            AA  N++  +SA   A     I AG       G  A++ +  +  P        G+ ++Y+GNV    ++E L+ +F  FG ++ C+++    NP QHRG+GF++F     AK+A++TMNGF++ G+ L+V +AT                    PL+ G   P        P  Q  + A+ V    + AP   P+   S++ PPA AA  XXXXXXXXXXXXXXXXXXXXXX  PF + P+                                   P  S  ++L N V PE+++D  LK+E+ EEC ++G V+ V+  +      G+ R+FV F     AAAA  +LH R+FGGR ++ R Y+ AA+  G+  L
Sbjct:  101 RIYVGSLDYYLTELEIKSVFQAFGTVTSVDMP--KEGDRSKGFCFVEYASPEAAQMALSTMHNFVLKGRTIKVGRPTAVGAGQPQQLLARPLGGYEMNMGGGAAATPNMSLVSSAQAGAAAATAILAGRAGQTPQGDMASIVSLGQLTPEKQQEAQPGSNRIYVGNVPFGFSSEDLKKIFVCFGSILTCQLLPSQENPQQHRGYGFIEFASPDAAKLAIDTMNGFEVVGKQLKVNYATALRSAAVAGSLGVGMGAQLTPLMAGSGTPGSIEGSAAPVMQGGTGANTVPLGFQPAPPASPLGPPSAVVPPA-AAPSXXXXXXXXXXXXXXXXXXXXXXXXPFPEKPSG---------------------------------EPGSSSVLLLTNTVAPEEVDD-DLKEEMREECRRFGDVDAVQVEIIK----GDVRIFVAFKEAGAAAAAAPQLHGRWFGGRQIKVRYYEKAAYEAGNFVL 539          
BLAST of mRNA_P-wetherbeei_contig2109.2.4 vs. uniprot
Match: A0A397VNL8_9GLOM (Uncharacterized protein n=3 Tax=Gigaspora TaxID=4873 RepID=A0A397VNL8_9GLOM)

HSP 1 Score: 163 bits (412), Expect = 3.420e-41
Identity = 137/438 (31.28%), Postives = 194/438 (44.29%), Query Frame = 1
Query:    1 RIHVGSLHYALQEADIRAVFSPFGTIKKVSMTIDQATGRHKGFCFLEFETPESAETALTSMNGFELAGRQITVGRPHDSSQAPAQPAAIGNVAATASAMLAAGGMLPIGAGGAAAAVGAGPRFVPVGNTKVYIGNVAPVVTAEMLRAVFQPFGLVIGCEMVSDPANPGQHRGFGFVQFLEEKLAKVALETMNGFDLAGRSLRVAWAT---------DQHKPLPLLPGVVLPNQPPAQPVSAADAVAAALRGAPNVPMPTVSSIAPPAPAAAPXXXXXXXXXXXXXXXXXXXXXXSLPFGKSPASPLPLPPPTNGAPAATAAQIAPAATPAXXXAGAAAPERSPCVVLDNMVGPEDLEDPSLKDEIGEECAKYGPVERVEAVLRPPPSI----GEARVFVLFATDADAAAAVSRLHERYFGGRVVQARLYDAAAFLRGD 1275
            RI+VGS+++ L E  +R VF  FG+IK VSM++D  TG+HKGFCF+EFETPE A  AL SMNG EL GRQ+ VGRP++              AATA+ +L                        P   T++Y+ NV   V+ + L ++F+ FG +I C ++ D     +H+G+GF++F +E  A  A+ +MN F+L G  L V  A             + LP LP  V P  PP    S + +       A N      + +A    AA                                               A   ++A A             E SP V + N V P +++D +L+DE  EEC+ YG V +V   +          G  ++FV F   ADA  A  +L  R+FGGR + A L+D   F  GD
Sbjct:  184 RIYVGSINFELTEQHLRVVFGQFGSIKSVSMSLDPLTGKHKGFCFIEFETPEGASLALESMNGAELGGRQLKVGRPNN------------YTAATAAGLL------------------------PPPKTRIYVSNVNEYVSEDDLLSIFESFGKIIHCALLPDLITR-KHKGYGFIEFYDESAATTAVSSMNNFELGGLILHVGKAVIGGPLSEGMKAIEKLPPLPVGVTP--PPTLVASPSVSAXXXXXKAQNAAAKIAADLAARGQAAVESVAQEENMSISASQRY-----------------------------AIMQKLARA-------------ESSPVVCIRNAVAPSEVDD-TLEDEFQEECSNYGNVCKVVVHVDLEEGFEGERGLVKIFVQFEEGADAVKAKEKLDGRWFGGRRINATLFDLKKFQTGD 539          
BLAST of mRNA_P-wetherbeei_contig2109.2.4 vs. uniprot
Match: A0A0G4ER37_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ER37_VITBC)

HSP 1 Score: 162 bits (411), Expect = 6.870e-41
Identity = 159/464 (34.27%), Postives = 230/464 (49.57%), Query Frame = 1
Query:    1 RIHVGSLHYALQEADIRAVFSPFGTIKKVSMTIDQATGRHKGFCFLEFETPESAETALTSMNGFELAGRQITVGRPHDSSQAPAQPAA------IGNVAATASAMLAAGGMLPIG------------------------AGGAAAAVGAGPRFVPVGNTKVYIGNVAPVVTAEMLRAVFQPFGLVIGCEMVSDPANPGQHRGFGFVQFLEEKLAKVALETMNGFDLAGRSLRVAWATDQHKPL-------PLLPGVVLPNQPPAQPVSAADAVAAALRGAPNVPMPTVSSIAPPAPAAAPXXXXXXXXXXXXXXXXXXXXXXSLPFGKSPASPLPLPPPTNGAPAATAAQIAPAATPAXXXAGAAAPERSPCVVLDNMVGPEDLEDPSLKDEIGEECAKYGPVERVEAVLRPPPSIGEARVFVLFATDADAAAAVSRLHERYFGGRVVQARLYDAAAFLRGDLD 1281
            RI+VG+L Y L E DI+ VF  FG I  + M   +  GR KGFCF+EF+ PE AE AL +M GF++ GR + +GRP   +     P A      +G  AA A A+                                  AGG A +     +   +   ++Y+G +     A+ ++ +FQ FG ++ CE++       QHRG+GF++F  ++ A++A++TMNGF++AG++L+V WAT Q KP        PLL  + +P         A    AAA+ GA N               A  XXXXXXXXXXXXXXXXXXXXXX       P+               T A +APAA+          PE +  + + +MV P++++D  L+DEI +EC  YG V  V+  +       +  +FV FA   +A  AV  L+ R+FGG+ +   +YD AAF RG  +
Sbjct:  148 RIYVGNLDYTLTEMDIKQVFMAFGGITSIDMP--KEGGRSKGFCFIEFQKPEMAEQALAAMQGFQIKGRTVRLGRPSPQAGDATAPTAASLSGGLGANAAQAGALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGAVSPS---QAADLAMKRIYVGFIPYQFNADDVKQIFQVFGQIVACELIPSLDKKEQHRGYGFIEFATQEQAELAIKTMNGFEVAGKTLKVNWATAQAKPTGTIPAANPLLANLAIPGPLGNGAAPALGDAAAAVAGAVNG-------------LAGSXXXXXXXXXXXXXXXXXXXXXXXXXVANQPSX--------------TPAPLAPAAS---------LPEGT-LIAMTDMVAPDEVDD-DLEDEIRQECGNYGTVMTVKTHVNRDSD--KVVIFVAFAQPDEAKKAVPELNGRWFGGKQIHCAIYDVAAFARGSYE 566          
BLAST of mRNA_P-wetherbeei_contig2109.2.4 vs. uniprot
Match: A0A6A7GAW0_9CRUS (RNA recognition motif containing protein (Fragment) n=2 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7GAW0_9CRUS)

HSP 1 Score: 164 bits (415), Expect = 1.070e-40
Identity = 149/449 (33.18%), Postives = 206/449 (45.88%), Query Frame = 1
Query:    1 RIHVGSLHYALQEADIRAVFSPFGTIKKVSMTIDQATGRHKGFCFLEFETPESAETALTSMNGFELAGRQITVGRPHDSSQA------PAQP--AAIGNVAATASAMLAAGGMLPIGAGG-----AAAAVGAGPRFVPV-GNTKVYIGNVAPVVTAEMLRAVFQPFGLVIGCEMVSDPANPGQHRGFGFVQFLEEKLAKVALETMNGFDLAGRSLRVAWATDQHKPLPLLPGVVLPNQPPAQPVSAADAVAAALRGAPNVPM------PTVSSIAPPAPAAAPXXXXXXXXXXXXXXXXXXXXXXSLPFGKSPASPLPLPPPTNGAPAATAAQIAPAATPAXXXAGAAAPERSPCVVLDNMVGPEDLEDPSLKDEIGEECAKYGPVERVEAVLRPPPSIGEA-------RVFVLFATDADAAAAVSRLHERYFGGRVVQARLYDAAAFL 1266
            RI+VGSL Y L E DIR  F  FG I  + M   +  GR KGFCF+EF TPESA+ A+ +MNGF L GR I VGRP     A      PA P   A+G VA +  A    G +L           A A   +G +  P   N ++Y+G++   + A  ++ +F+ FG +  C+++ +P   G+HRG+GFV+F++EK A+ A+++MNGF+L GR L+V  A           G   P  P                G+P V +      PT ++I PP                             +P    P S L        A A TA                     S C+VL NMV PED+ D  L  E+ EEC  YGPVE V   +    S   A       +++ L+ + +DA    S L ER+FGG+VV+A  +D   FL
Sbjct:  381 RIYVGSLSYELAEDDIRMAFQSFGGIIALDMP-KEYPGRSKGFCFMEFSTPESAQRAVDTMNGFVLGGRSIKVGRPTAIQGASAMAPRPAMPNMIALGGVANSYGAAATTGSILNQSVINQHVQQAIAQARSGIKPAPATANRRIYVGSIPWDMDAGNIKQIFEAFGPISSCQLLQNPET-GKHRGYGFVEFMDEKSARDAVQSMNGFELCGRQLKVGPAK----------GASTPTGP---------------LGSPGVGLGELGMVPTTAAIPPPV----------------------------IPSVPKPPSIL------QKAKAFTA--------------------ESRCIVLLNMVSPEDI-DADLALEVQEECENYGPVESVIVHMSSDASAAAADQEVTAVQIYTLYKSVSDAVKGRSALDERWFGGKVVKALFFDENKFL 747          
BLAST of mRNA_P-wetherbeei_contig2109.2.4 vs. uniprot
Match: G4LVJ1_SCHMA (Fuse-binding protein-interacting repressor siahbp1, putative n=7 Tax=Schistosoma TaxID=6181 RepID=G4LVJ1_SCHMA)

HSP 1 Score: 159 bits (401), Expect = 9.010e-40
Identity = 147/466 (31.55%), Postives = 207/466 (44.42%), Query Frame = 1
Query:    1 RIHVGSLHYALQEADIRAVFSPFGTIKKVSMTIDQATGRHKGFCFLEFETPESAETALTSMNGFELAGRQITVGRPHDSSQAPAQPAAIGNVAATASAMLAAGGMLPIGAGGAAAAVGAGPRFVPVGNTKVYIGNVAPVVTAEMLRAVFQPFGLVIGCEMVSDPANPGQHRGFGFVQFLEEKLAKVALETMNGFDLAGRSLRVAWA-TDQHKPLPL-LPGVVLPNQPPAQP-------------------VSAADAVAAALRGAPNVPMPTVSSIAPPAPAA-----------APXXXXXXXXXXXXXXXXXXXXXXSLPFGKSPASPLPLPPPTNGAPAATA-------AQIAPAATPAXXXAGAAAPERSPCVVLDNMVGPEDLEDPSLKDEIGEECAKYGPVERVEAVLRPPPSIGEARVFVLFATDADAAAAVSRLHERYFGGRVVQARLYDAAAFLRGDLD 1281
            RI+VGS+ + + E +IR  FSPFG IK V+++ D    +HKGF F+EFE PE+A  AL  MNG+ LAGR + VGRP ++ Q  A  A +                         A V   PR        VYI +V P +T   ++ VF+ FG V  C +  DP   G+HRGFG++ F  E+ A  A+ +MN FDLAG+ LRV  A T +  PLP  L      N     P                   +SA +  + +L GA N P  T +  + PA AA                                   +  +     S +P+P  +   P  +         ++                  S  ++L+NMVG  +++D  L++E+ EEC  YG V RV   +     +   R+F+ F    DA AA   L++RYF GRVVQARLYD   F   +LD
Sbjct:   94 RIYVGSISFEIGEEEIRKTFSPFGPIKSVALSWDTVLQKHKGFAFVEFEVPEAASLALDQMNGYTLAGRNLKVGRPSNAPQTAALEAEL------------------------RAEVSTKPR--------VYIASVHPELTESDIQTVFEAFGKVNSCSLYPDPKCSGRHRGFGYIDFESEEAAIAAVSSMNCFDLAGQQLRVGRALTPKGVPLPFELNANKSLNTISTNPXXXXXXXXXXXXXXAKVMTLSAEEISSNSLNGA-NRPT-TSTGFSGPAAAAQNLPPPGVFIPTSVGDNVTSTSEEKQIEDVISVTTASVWDDDDDSAIPVPTASEEIPEISTEDQVGEHTEVTAHLNDVEDSQDVFTISMSRVLLLENMVGVNEVDD-ELQEEVMEECGNYGSVLRVLIHIMTSQDV---RIFIQFDRSDDAKAACCALNQRYFAGRVVQARLYDEERFQLHELD 521          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2109.2.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CC18_9STRA8.480e-6840.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FWX1_ECTSI6.160e-6140.05RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxI... [more]
A0A0U9HK97_KLENI2.100e-4833.05Putative RNA recognition motif containing protein ... [more]
A0A7S3GHK6_9EUKA4.500e-4632.41Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A7S2AH99_9STRA8.100e-4634.34Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6P5WD02_9EIME3.450e-4335.00poly(U)-binding-splicing factor PUF60 n=1 Tax=Cycl... [more]
A0A397VNL8_9GLOM3.420e-4131.28Uncharacterized protein n=3 Tax=Gigaspora TaxID=48... [more]
A0A0G4ER37_VITBC6.870e-4134.27Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A6A7GAW0_9CRUS1.070e-4033.18RNA recognition motif containing protein (Fragment... [more]
G4LVJ1_SCHMA9.010e-4031.55Fuse-binding protein-interacting repressor siahbp1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2109contigP-wetherbeei_contig2109:2257..4244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FWX1
Preferred namePUF60
PFAMsRRM_1
Model size1287
Max annot lvl2759|Eukaryota
KEGG koko:K11798,ko:K12811,ko:K12838
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000245,GO:0000375,GO:0000377,GO:0000380,GO:0000381,GO:0000398,GO:0001558,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006366,GO:0006376,GO:0006396,GO:0006397,GO:0006401,GO:0006417,GO:0006725,GO:0006807,GO:0007276,GO:0007281,GO:0007282,GO:0007623,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008285,GO:0008356,GO:0008380,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009299,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010638,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030154,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031974,GO:0031981,GO:0032204,GO:0032206,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0042127,GO:0042162,GO:0042752,GO:0042789,GO:0042802,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0043487,GO:0043488,GO:0043565,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045727,GO:0045893,GO:0045926,GO:0045935,GO:0046483,GO:0046700,GO:0048024,GO:0048468,GO:0048511,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050684,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051054,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051301,GO:0051338,GO:0051347,GO:0051704,GO:0051972,GO:0051973,GO:0060255,GO:0061013,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097167,GO:0097659,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902680,GO:1903311,GO:1903506,GO:1903508,GO:1904353,GO:1904355,GO:1905661,GO:1905663,GO:1990904,GO:2000112,GO:2000278,GO:2000573,GO:2001141,GO:2001252
Exons3
Evalue1.01e-61
EggNOG OGsKOG0124@1|root,KOG0124@2759|Eukaryota
EC3.6.4.13
DescriptionRNA splicing
Cds size1287
COG categoryS
BRITEko00000,ko00001,ko01000,ko03041,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186216.2689092-CDS-P-wetherbeei_contig2109:2256..34041683186216.2689092-CDS-P-wetherbeei_contig2109:2256..3404Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2109 2257..3404 -
1683186216.2804875-CDS-P-wetherbeei_contig2109:3747..38501683186216.2804875-CDS-P-wetherbeei_contig2109:3747..3850Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2109 3748..3850 -
1683186216.28867-CDS-P-wetherbeei_contig2109:4208..42441683186216.28867-CDS-P-wetherbeei_contig2109:4208..4244Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2109 4209..4244 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2109.2.4prot_P-wetherbeei_contig2109.2.4Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2109 2257..4244 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2109.2.4

>prot_P-wetherbeei_contig2109.2.4 ID=prot_P-wetherbeei_contig2109.2.4|Name=mRNA_P-wetherbeei_contig2109.2.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=429bp
RIHVGSLHYALQEADIRAVFSPFGTIKKVSMTIDQATGRHKGFCFLEFET
PESAETALTSMNGFELAGRQITVGRPHDSSQAPAQPAAIGNVAATASAML
AAGGMLPIGAGGAAAAVGAGPRFVPVGNTKVYIGNVAPVVTAEMLRAVFQ
PFGLVIGCEMVSDPANPGQHRGFGFVQFLEEKLAKVALETMNGFDLAGRS
LRVAWATDQHKPLPLLPGVVLPNQPPAQPVSAADAVAAALRGAPNVPMPT
VSSIAPPAPAAAPVPPPPAPATTSPPPPAAAASPPSLPFGKSPASPLPLP
PPTNGAPAATAAQIAPAATPAAAAAGAAAPERSPCVVLDNMVGPEDLEDP
SLKDEIGEECAKYGPVERVEAVLRPPPSIGEARVFVLFATDADAAAAVSR
LHERYFGGRVVQARLYDAAAFLRGDLDL*
back to top

mRNA from alignment at P-wetherbeei_contig2109:2257..4244-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2109.2.4 ID=mRNA_P-wetherbeei_contig2109.2.4|Name=mRNA_P-wetherbeei_contig2109.2.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1988bp|location=Sequence derived from alignment at P-wetherbeei_contig2109:2257..4244- (Phaeothamnion wetherbeei SAG_119_79)
CGTATCCACGTCGGCAGCCTTCATTACGCGTTGCAGGTGCGTCGTACGTC GTCATCGTATTCTTAGAGCGCAGAGCGAGCGCCTGCTGGTTCACTTCTCC GCCCCGCGTGCTAATGGGAGAGATCGGAGGACGTTTTATCTGCTAGAACT ATTATTTACTGGTTTCTTGTGCTTGGTTTTGGTTTTCGCGCTGCAACGCT TTCGGTCTCAGGTGTTTGCAGAGAAAGCCTTTTCCCGAGTTTCGTGTAGA CTGCTCTTTCTGGCTTCTGTCCCGTTAGAATGTTTGCTGCCTATAATAAT AGTGCCGTTTGACTCACCGCGTTCCTTCCGCCGCTGCCGCCGCCACCATC ACCATGACTGCGCCGCTGGATGCCTTCGGGACGCCTGCTCACAGGAGGCG GATATCCGCGCGGTGTTCAGTCCATTTGGCACTATCAAGAAGGTGTCGAT GACCATCGATCAGGCCACAGGCCGCCACAAGGGCTTCTGCTTCCTCGGTG AGCGGCCGTCCGCGGCCATGGCAGCAGTCGGAACCCACAGTCGGCGGTCC GAGTAGACCAGGCGCTCTTCGGACCACGGTTTGCTTTAGCGTGCACATCT GCAGGGATCCTTGGCGCCGTGCTTTTGGGGGGTTAGGGTAAGGAATCATT GTCTATCTCTACAATTTCAATTACCGTCAGCTTTGACCGCTAGATTTCTT GATCGTCCCTCACAGGGCGGCTGTGTACGGCGGTACTGGCAGCGGTGTCG ACAGCACATTCGAAGGCACTGGCATTGAACCTCTTCACTCAATCAAGCAC CTTATGATGCCACCTTTTTCCTTTCTCGCGCTCCTGGCAGAGTTTGAGAC TCCCGAGTCGGCCGAGACGGCGCTGACCAGCATGAACGGCTTCGAGCTCG CCGGCCGCCAGATCACCGTCGGCCGCCCCCATGACTCGTCGCAAGCGCCC GCCCAGCCCGCCGCCATCGGCAACGTCGCCGCGACCGCCAGCGCCATGCT CGCCGCCGGCGGCATGCTGCCGATTGGCGCCGGCGGTGCGGCGGCGGCGG TGGGGGCAGGCCCACGGTTCGTGCCCGTGGGCAACACCAAGGTGTACATC GGTAACGTGGCGCCCGTCGTGACGGCGGAGATGCTGCGGGCGGTGTTCCA GCCGTTCGGGCTCGTCATCGGCTGCGAGATGGTCAGCGACCCGGCCAATC CAGGGCAGCATCGTGGCTTCGGCTTCGTGCAGTTTCTGGAAGAAAAGCTC GCAAAAGTGGCGCTCGAGACGATGAATGGCTTCGATTTGGCCGGGCGGTC GCTGCGGGTGGCGTGGGCGACTGACCAGCACAAGCCACTGCCGCTTCTGC CAGGCGTCGTGCTGCCGAACCAGCCACCCGCCCAGCCCGTGTCGGCGGCC GACGCCGTTGCCGCCGCGCTGCGGGGCGCGCCCAACGTGCCTATGCCCAC CGTCTCGTCTATCGCACCGCCAGCGCCGGCCGCTGCACCGGTACCGCCAC CGCCCGCGCCCGCCACGACGTCGCCGCCGCCGCCCGCTGCTGCGGCATCA CCGCCATCGCTGCCGTTCGGAAAGTCGCCGGCGTCGCCACTGCCGCTACC TCCGCCCACGAACGGCGCTCCTGCAGCAACGGCTGCGCAGATCGCACCGG CCGCGACACCGGCAGCGGCGGCGGCGGGTGCTGCGGCGCCGGAGCGGTCG CCGTGCGTGGTTCTGGACAACATGGTGGGGCCGGAGGACCTCGAGGACCC GTCCCTGAAGGACGAGATCGGCGAGGAGTGCGCCAAGTACGGACCCGTCG AACGCGTCGAAGCGGTGCTGCGGCCTCCGCCGTCCATTGGGGAGGCGCGT GTCTTCGTGCTGTTCGCCACCGATGCGGACGCCGCGGCGGCTGTGTCGCG GCTCCACGAGCGCTACTTTGGGGGCCGCGTGGTGCAGGCGCGGCTCTACG ATGCAGCGGCGTTCCTGCGGGGCGACTTGGACCTCTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig2109:2257..4244-

>mRNA_P-wetherbeei_contig2109.2.4 ID=mRNA_P-wetherbeei_contig2109.2.4|Name=mRNA_P-wetherbeei_contig2109.2.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1287bp|location=Sequence derived from alignment at P-wetherbeei_contig2109:2257..4244- (Phaeothamnion wetherbeei SAG_119_79)
CGTATCCACGTCGGCAGCCTTCATTACGCGTTGCAGGAGGCGGATATCCG
CGCGGTGTTCAGTCCATTTGGCACTATCAAGAAGGTGTCGATGACCATCG
ATCAGGCCACAGGCCGCCACAAGGGCTTCTGCTTCCTCGAGTTTGAGACT
CCCGAGTCGGCCGAGACGGCGCTGACCAGCATGAACGGCTTCGAGCTCGC
CGGCCGCCAGATCACCGTCGGCCGCCCCCATGACTCGTCGCAAGCGCCCG
CCCAGCCCGCCGCCATCGGCAACGTCGCCGCGACCGCCAGCGCCATGCTC
GCCGCCGGCGGCATGCTGCCGATTGGCGCCGGCGGTGCGGCGGCGGCGGT
GGGGGCAGGCCCACGGTTCGTGCCCGTGGGCAACACCAAGGTGTACATCG
GTAACGTGGCGCCCGTCGTGACGGCGGAGATGCTGCGGGCGGTGTTCCAG
CCGTTCGGGCTCGTCATCGGCTGCGAGATGGTCAGCGACCCGGCCAATCC
AGGGCAGCATCGTGGCTTCGGCTTCGTGCAGTTTCTGGAAGAAAAGCTCG
CAAAAGTGGCGCTCGAGACGATGAATGGCTTCGATTTGGCCGGGCGGTCG
CTGCGGGTGGCGTGGGCGACTGACCAGCACAAGCCACTGCCGCTTCTGCC
AGGCGTCGTGCTGCCGAACCAGCCACCCGCCCAGCCCGTGTCGGCGGCCG
ACGCCGTTGCCGCCGCGCTGCGGGGCGCGCCCAACGTGCCTATGCCCACC
GTCTCGTCTATCGCACCGCCAGCGCCGGCCGCTGCACCGGTACCGCCACC
GCCCGCGCCCGCCACGACGTCGCCGCCGCCGCCCGCTGCTGCGGCATCAC
CGCCATCGCTGCCGTTCGGAAAGTCGCCGGCGTCGCCACTGCCGCTACCT
CCGCCCACGAACGGCGCTCCTGCAGCAACGGCTGCGCAGATCGCACCGGC
CGCGACACCGGCAGCGGCGGCGGCGGGTGCTGCGGCGCCGGAGCGGTCGC
CGTGCGTGGTTCTGGACAACATGGTGGGGCCGGAGGACCTCGAGGACCCG
TCCCTGAAGGACGAGATCGGCGAGGAGTGCGCCAAGTACGGACCCGTCGA
ACGCGTCGAAGCGGTGCTGCGGCCTCCGCCGTCCATTGGGGAGGCGCGTG
TCTTCGTGCTGTTCGCCACCGATGCGGACGCCGCGGCGGCTGTGTCGCGG
CTCCACGAGCGCTACTTTGGGGGCCGCGTGGTGCAGGCGCGGCTCTACGA
TGCAGCGGCGTTCCTGCGGGGCGACTTGGACCTCTGA
back to top