mRNA_P-wetherbeei_contig21089.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21089.1.1
Unique NamemRNA_P-wetherbeei_contig21089.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig21089.1.1 vs. uniprot
Match: A0A7V5YYP3_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7V5YYP3_9CHLR)

HSP 1 Score: 55.5 bits (132), Expect = 1.860e-6
Identity = 37/121 (30.58%), Postives = 59/121 (48.76%), Query Frame = 1 
Query:    4 ALVALASLDVAYFHCRFNPTLNPSELTPLSPALASLQAALAGEEKGMWRVERQLAAPYDTGTPYGLNLVGGYESVYPKRVAQVAALCQQAPLNM----RFLGFSSFDSPILESLATRYVIS 354
            AL+AL +LD   +   F P ++P+ LT     +  L+         ++  + +   P +T   +GL+ V GY+S+ PK  A+V +  Q   L      R     + DSPIL+ L  RYV+S
Sbjct:  570 ALLALLALDPWLWFHDFMPAVDPAPLTQTPGVVQFLRQQPGPYRIAVYDTQSRKPLPPNTNMLFGLSSVSGYDSIIPKWYAEVMSAVQPQELEYNQISRLTRPEALDSPILDLLNVRYVLS 690
[Close]
BLAST of mRNA_P-wetherbeei_contig21089.1.1 vs. uniprot
Match: A0A7C5QPS3_9CHLR (Polysacc_synt_C domain-containing protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C5QPS3_9CHLR)

HSP 1 Score: 51.6 bits (122), Expect = 4.270e-5
Identity = 41/126 (32.54%), Postives = 62/126 (49.21%), Query Frame = 1 
Query:    4 ALVALASLDVAYFHCRFNPTLNPSELTPLSPALASLQAALAGEEKGMWRV-----ERQLAAPYDTGTPYGLNLVGGYESVYPKRVAQVAALCQQAPLNM----RFLGFSSFDSPILESLATRYVIS 354
            AL+AL +LD   +   F P  +P+   PLS A   +Q     ++ G +R+     +     P +T   +GL+ V GY+S+ PK  A+V +  Q   L      R     + DSPIL+ L  RYV+S
Sbjct:  563 ALLALLALDPWLWFHDFMPAADPA---PLSEAPEVVQ--FLRQQPGPFRIVVYDTQSHKPLPPNTNMLFGLSSVSGYDSIIPKWYAEVMSAIQPQELEYNQISRLTRPEALDSPILDLLNVRYVLS 683
[Close]
BLAST of mRNA_P-wetherbeei_contig21089.1.1 vs. uniprot
Match: A0A7C1J1D5_9CHLR (Polysacc_synt_C domain-containing protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C1J1D5_9CHLR)

HSP 1 Score: 50.8 bits (120), Expect = 7.940e-5
Identity = 39/121 (32.23%), Postives = 56/121 (46.28%), Query Frame = 1 
Query:    4 ALVALASLDVAYFHCRFNPTLNPSELTPLSPALASLQAALAGEEKGMWRVERQLAAPYDTGTPYGLNLVGGYESVYPKRVAQVAALC--QQAPLNM--RFLGFSSFDSPILESLATRYVIS 354
            AL+A+  LD A +     P      LT  SPA+  LQ         ++        P +T   YGL  V GY+S+ P++  +V  L   Q+   N   R    +S DSPIL+ L  RYV++
Sbjct:  552 ALLAVLFLDPAAWFRGLMPATGAETLTMRSPAIEYLQQQPQPFRITVFDTRSTKPLPANTNMLYGLQDVRGYDSIIPRQYCEVMELVGPQELLYNQIARLTREASLDSPILDLLNVRYVLT 672
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21089.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7V5YYP3_9CHLR1.860e-630.58Uncharacterized protein (Fragment) n=1 Tax=Anaerol... [more]
A0A7C5QPS3_9CHLR4.270e-532.54Polysacc_synt_C domain-containing protein n=1 Tax=... [more]
A0A7C1J1D5_9CHLR7.940e-532.23Polysacc_synt_C domain-containing protein n=1 Tax=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21089contigP-wetherbeei_contig21089:103..462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size360
Hectar predicted targeting categoryother localisation
Exons1
Cds size360
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186216.1572554-CDS-P-wetherbeei_contig21089:102..4621683186216.1572554-CDS-P-wetherbeei_contig21089:102..462Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21089 103..462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21089.1.1prot_P-wetherbeei_contig21089.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21089 103..462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21089.1.1

>prot_P-wetherbeei_contig21089.1.1 ID=prot_P-wetherbeei_contig21089.1.1|Name=mRNA_P-wetherbeei_contig21089.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=120bp
WALVALASLDVAYFHCRFNPTLNPSELTPLSPALASLQAALAGEEKGMWR
VERQLAAPYDTGTPYGLNLVGGYESVYPKRVAQVAALCQQAPLNMRFLGF
SSFDSPILESLATRYVISAP
back to top

mRNA from alignment at P-wetherbeei_contig21089:103..462-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21089.1.1 ID=mRNA_P-wetherbeei_contig21089.1.1|Name=mRNA_P-wetherbeei_contig21089.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig21089:103..462- (Phaeothamnion wetherbeei SAG_119_79)
TGGGCGCTGGTAGCTCTGGCCAGCCTCGACGTGGCCTACTTCCACTGTCG
ATTCAACCCAACTCTGAACCCGTCGGAGTTGACGCCGCTCAGTCCCGCCC
TGGCATCTCTACAGGCAGCCCTGGCTGGGGAAGAAAAGGGGATGTGGCGC
GTCGAGCGGCAGTTAGCGGCACCCTATGACACAGGTACGCCCTATGGCTT
GAACCTGGTAGGAGGCTACGAGTCGGTTTATCCCAAGCGAGTCGCCCAGG
TCGCGGCACTCTGCCAGCAAGCGCCCCTGAATATGCGATTCCTCGGTTTC
AGCAGCTTTGACTCGCCCATTTTGGAGTCTCTCGCAACCCGATACGTGAT
CTCCGCCCCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig21089:103..462-

>mRNA_P-wetherbeei_contig21089.1.1 ID=mRNA_P-wetherbeei_contig21089.1.1|Name=mRNA_P-wetherbeei_contig21089.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig21089:103..462- (Phaeothamnion wetherbeei SAG_119_79)
TGGGCGCTGGTAGCTCTGGCCAGCCTCGACGTGGCCTACTTCCACTGTCG
ATTCAACCCAACTCTGAACCCGTCGGAGTTGACGCCGCTCAGTCCCGCCC
TGGCATCTCTACAGGCAGCCCTGGCTGGGGAAGAAAAGGGGATGTGGCGC
GTCGAGCGGCAGTTAGCGGCACCCTATGACACAGGTACGCCCTATGGCTT
GAACCTGGTAGGAGGCTACGAGTCGGTTTATCCCAAGCGAGTCGCCCAGG
TCGCGGCACTCTGCCAGCAAGCGCCCCTGAATATGCGATTCCTCGGTTTC
AGCAGCTTTGACTCGCCCATTTTGGAGTCTCTCGCAACCCGATACGTGAT
CTCCGCCCCG
back to top