mRNA_P-wetherbeei_contig21045.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21045.1.1
Unique NamemRNA_P-wetherbeei_contig21045.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21045.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21045contigP-wetherbeei_contig21045:57..1184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1041
Hectar predicted targeting categorysignal anchor
Exons2
Cds size1035
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186215.5068498-UTR-P-wetherbeei_contig21045:56..621683186215.5068498-UTR-P-wetherbeei_contig21045:56..62Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig21045 57..62 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186215.5166657-CDS-P-wetherbeei_contig21045:62..7311683186215.5166657-CDS-P-wetherbeei_contig21045:62..731Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21045 63..731 +
1683186215.525459-CDS-P-wetherbeei_contig21045:818..11841683186215.525459-CDS-P-wetherbeei_contig21045:818..1184Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21045 819..1184 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21045.1.1prot_P-wetherbeei_contig21045.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21045 63..1184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21045.1.1

>prot_P-wetherbeei_contig21045.1.1 ID=prot_P-wetherbeei_contig21045.1.1|Name=mRNA_P-wetherbeei_contig21045.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=345bp
MQSDSLAYLLQTRDARRERDRFPEKMFAIAAIAWLAVFLLLVALAPLHCG
LGEAARMVACTILIPVTAMVLIGLPLRQVTKDASIHASFFGGNCYQEILG
TLLRPRDILDQIARHSIRQGLKQSSPWVGLSALLWTILCPVGFFKILLAV
ILWAPLTALFIFGCTYMAQELAIWNSQLKDGLLNSLGAMVLGSLTVAPFV
VAGLVAATCLCNREYEAAATAALLGRKIVGHRRNPWVPIWSQNPIVVRER
TRDASRMPGGLLGALVFQLPLFFSTLLLMLPLACDATVNHDLYWFLMVIG
SIIQSTRAGRRCTGAIVGEIENKTLESMLNTRLHAREYVRGWLEV
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mRNA from alignment at P-wetherbeei_contig21045:57..1184+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21045.1.1 ID=mRNA_P-wetherbeei_contig21045.1.1|Name=mRNA_P-wetherbeei_contig21045.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1128bp|location=Sequence derived from alignment at P-wetherbeei_contig21045:57..1184+ (Phaeothamnion wetherbeei SAG_119_79)
AGAGAGATGCAAAGCGATTCTTTAGCCTACCTATTGCAGACGCGAGATGC
CCGCCGAGAGCGCGACCGATTCCCCGAGAAGATGTTCGCCATTGCGGCGA
TCGCGTGGCTGGCTGTGTTCCTTCTGCTGGTAGCCTTGGCACCTCTGCAC
TGCGGACTTGGCGAGGCCGCACGAATGGTCGCCTGCACAATTCTCATTCC
TGTCACCGCGATGGTGCTTATCGGCTTGCCTCTGCGCCAGGTCACAAAAG
ACGCTTCGATCCACGCCAGCTTTTTCGGCGGCAACTGCTATCAGGAGATC
CTGGGTACACTGTTGCGCCCACGTGATATCCTCGATCAAATCGCCCGCCA
TTCTATCCGGCAGGGCCTGAAGCAGAGCTCCCCCTGGGTCGGCCTCTCAG
CGCTCTTGTGGACCATCCTCTGCCCGGTCGGGTTCTTCAAGATTCTGCTG
GCTGTCATCTTGTGGGCACCGCTGACAGCACTGTTCATTTTTGGCTGCAC
CTATATGGCTCAAGAGCTGGCAATTTGGAACTCGCAGCTCAAAGATGGCC
TCCTCAATTCGCTCGGCGCGATGGTCCTCGGTTCCCTCACGGTAGCTCCC
TTCGTCGTGGCCGGACTTGTAGCCGCCACCTGTCTGTGCAACCGTGAGTA
CGAAGCGGCCGCCACCGCGGCTCTGGTCGTGGCCCTCACGATCCCCCTCT
GCCGCTACGTCTGCGTCCTGGGAATCGAGCGCCTGCCCCACGTTCGCCTC
AAGCTGCAACAGTTGGGCCGTAAAATTGTCGGCCACCGCCGCAACCCCTG
GGTCCCCATCTGGTCACAGAACCCCATCGTCGTGCGCGAGCGCACCCGAG
ATGCTAGCCGCATGCCCGGCGGCCTGCTGGGCGCCCTGGTGTTTCAGTTG
CCGCTCTTCTTCTCGACCCTCCTGCTCATGCTGCCGCTCGCCTGTGACGC
CACTGTGAACCACGACCTCTACTGGTTCCTGATGGTGATAGGCAGCATCA
TTCAGTCTACTCGCGCCGGGCGTCGCTGCACGGGCGCCATCGTGGGCGAA
ATCGAAAACAAGACCCTGGAATCCATGCTCAATACCCGCCTCCACGCTCG
CGAGTATGTGCGCGGGTGGCTCGAGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21045:57..1184+

>mRNA_P-wetherbeei_contig21045.1.1 ID=mRNA_P-wetherbeei_contig21045.1.1|Name=mRNA_P-wetherbeei_contig21045.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1035bp|location=Sequence derived from alignment at P-wetherbeei_contig21045:57..1184+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAAAGCGATTCTTTAGCCTACCTATTGCAGACGCGAGATGCCCGCCG
AGAGCGCGACCGATTCCCCGAGAAGATGTTCGCCATTGCGGCGATCGCGT
GGCTGGCTGTGTTCCTTCTGCTGGTAGCCTTGGCACCTCTGCACTGCGGA
CTTGGCGAGGCCGCACGAATGGTCGCCTGCACAATTCTCATTCCTGTCAC
CGCGATGGTGCTTATCGGCTTGCCTCTGCGCCAGGTCACAAAAGACGCTT
CGATCCACGCCAGCTTTTTCGGCGGCAACTGCTATCAGGAGATCCTGGGT
ACACTGTTGCGCCCACGTGATATCCTCGATCAAATCGCCCGCCATTCTAT
CCGGCAGGGCCTGAAGCAGAGCTCCCCCTGGGTCGGCCTCTCAGCGCTCT
TGTGGACCATCCTCTGCCCGGTCGGGTTCTTCAAGATTCTGCTGGCTGTC
ATCTTGTGGGCACCGCTGACAGCACTGTTCATTTTTGGCTGCACCTATAT
GGCTCAAGAGCTGGCAATTTGGAACTCGCAGCTCAAAGATGGCCTCCTCA
ATTCGCTCGGCGCGATGGTCCTCGGTTCCCTCACGGTAGCTCCCTTCGTC
GTGGCCGGACTTGTAGCCGCCACCTGTCTGTGCAACCGTGAGTACGAAGC
GGCCGCCACCGCGGCTCTGTTGGGCCGTAAAATTGTCGGCCACCGCCGCA
ACCCCTGGGTCCCCATCTGGTCACAGAACCCCATCGTCGTGCGCGAGCGC
ACCCGAGATGCTAGCCGCATGCCCGGCGGCCTGCTGGGCGCCCTGGTGTT
TCAGTTGCCGCTCTTCTTCTCGACCCTCCTGCTCATGCTGCCGCTCGCCT
GTGACGCCACTGTGAACCACGACCTCTACTGGTTCCTGATGGTGATAGGC
AGCATCATTCAGTCTACTCGCGCCGGGCGTCGCTGCACGGGCGCCATCGT
GGGCGAAATCGAAAACAAGACCCTGGAATCCATGCTCAATACCCGCCTCC
ACGCTCGCGAGTATGTGCGCGGGTGGCTCGAGGTG
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