mRNA_P-wetherbeei_contig21033.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21033.1.1
Unique NamemRNA_P-wetherbeei_contig21033.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig21033.1.1 vs. uniprot
Match: D8LJX9_ECTSI (Atx10homo_assoc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJX9_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 9.220e-20
Identity = 45/80 (56.25%), Postives = 61/80 (76.25%), Query Frame = 1 
Query:  397 PEAAAPAGRKSDVVRVLANLCFRCQPAQEAVRTLDALPLVLGQCGLDVANPMLREWALLAVRNLCEGNEENQRAIAVLRP 636
            P+ A PAGRK ++++V+ N CFRC+ +Q+ VR    LPLVL  C +D ANP+LRE+ALLA+RNLCEGN  NQ +I+ L+P
Sbjct:  510 PDGAVPAGRKVELLKVIGNACFRCRRSQDLVREEGGLPLVLNHCKVDEANPLLREYALLALRNLCEGNAANQASISSLQP 589
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BLAST of mRNA_P-wetherbeei_contig21033.1.1 vs. uniprot
Match: A0A835ZAD7_9STRA (Spinocerebellar ataxia type 10 protein domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAD7_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.550e-19
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 1 
Query:  400 EAAAPAGRKSDVVRVLANLCFRCQPAQEAVRTLDALPLVLGQCGLDVANPMLREWALLAVRNLCEGNEENQRAIAVL 630
            +   P GRK+D+V+V+AN C  C+ AQ+ VR    +PLVL  C +D A+P LREW ++AVRNLCEGN ENQ  +A L
Sbjct:   20 DGGVPHGRKADLVKVIANACHCCRAAQDRVRGAGGVPLVLSHCNIDHASPFLREWGIVAVRNLCEGNAENQACVAKL 96
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BLAST of mRNA_P-wetherbeei_contig21033.1.1 vs. uniprot
Match: A0A6H5L010_9PHAE (Atx10homo_assoc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L010_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 4.800e-19
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:  406 AAPAGRKSDVVRVLANLCFRCQPAQEAVRTLDALPLVLGQCGLDVANPMLREWALLAVRNLCEGNEENQRAIAVLRP 636
            A PAGRK ++++V+ N CFRC+ +Q+ VR    LPLVL  C +D  NP+LRE+ALLAVRNLCEGN  NQ +IA L+P
Sbjct:  733 AVPAGRKVELLKVIGNACFRCRRSQDLVREEGGLPLVLNHCAVDETNPLLREYALLAVRNLCEGNPANQASIASLQP 809
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BLAST of mRNA_P-wetherbeei_contig21033.1.1 vs. uniprot
Match: L1K366_GUITC (Atx10homo_assoc domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K366_GUITC)

HSP 1 Score: 88.2 bits (217), Expect = 3.310e-17
Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = 1 
Query:  418 GRKSDVVRVLANLCFRCQPAQEAVRTLDALPLVLGQCGLDVANPMLREWALLAVRNLCEGNEENQRAIAVLRP 636
            G K DV+R+LAN+C+R + +Q+ VR L  +PL+L    +D  NP  REW++LAVRNLCEGNE NQ  IA ++P
Sbjct:   46 GLKCDVIRILANMCYRDRESQDMVRELGGIPLILQASNMDENNPFSREWSILAVRNLCEGNEANQEIIAGIKP 118
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BLAST of mRNA_P-wetherbeei_contig21033.1.1 vs. uniprot
Match: A0A2D4BF77_PYTIN (Atx10homo_assoc domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BF77_PYTIN)

HSP 1 Score: 89.4 bits (220), Expect = 1.470e-16
Identity = 46/95 (48.42%), Postives = 59/95 (62.11%), Query Frame = 1 
Query:  403 AAAPAGRKSDVVRVLANLCFRCQPAQEAVRTLDALPLVLGQCGLDVANPMLREWALLAVRNLCEGNEENQRAIAVLRPAPLVLRG-DRDGAVVVA 684
            A  P G +S ++RV+ NLC+R    Q+ VR    LPL L  C +D  NP+LREW+L+A+RNLCEGNE NQ+ I  LRP  +     D DG  V A
Sbjct:  276 AKEPFGYRSAIIRVVGNLCYRQTDHQDIVREKGFLPLFLNHCNVDEMNPLLREWSLVALRNLCEGNEANQQYITALRPQGIDKTSVDLDGLNVDA 370
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BLAST of mRNA_P-wetherbeei_contig21033.1.1 vs. uniprot
Match: M4BGF2_HYAAE (Atx10homo_assoc domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BGF2_HYAAE)

HSP 1 Score: 88.2 bits (217), Expect = 6.190e-16
Identity = 41/75 (54.67%), Postives = 51/75 (68.00%), Query Frame = 1 
Query:  412 PAGRKSDVVRVLANLCFRCQPAQEAVRTLDALPLVLGQCGLDVANPMLREWALLAVRNLCEGNEENQRAIAVLRP 636
            P G +S ++R++ NLCFR    Q+ VR    LPL L  C  D ANPM+REW+L+A+RNLCEGNE NQ  I  LRP
Sbjct:  406 PLGYRSSLIRLIGNLCFRHTEHQDLVRENGNLPLFLSHCNTDEANPMIREWSLVALRNLCEGNEANQAYINALRP 480
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BLAST of mRNA_P-wetherbeei_contig21033.1.1 vs. uniprot
Match: A0A662XYY0_9STRA (Atx10homo_assoc domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XYY0_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.230e-15
Identity = 45/98 (45.92%), Postives = 59/98 (60.20%), Query Frame = 1 
Query:  391 AEPEAAAPAGRKSDVVRVLANLCFRCQPAQEAVRTLDALPLVLGQCGLDVANPMLREWALLAVRNLCEGNEENQRAIAVLRPAPLVLRGDRDGAVVVA 684
            AE  +  P G +S ++RV+ NL FR    Q+ VR    LPL L  C +D  NP++REW+L+A+RNLCEGNE NQ  I+ LRP  +      D A  VA
Sbjct:  408 AEQPSTEPFGYRSGLIRVVGNLSFRHSAHQDLVRDEGYLPLFLNHCNIDETNPLIREWSLVALRNLCEGNEANQSYISALRPQGM------DSASSVA 499
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BLAST of mRNA_P-wetherbeei_contig21033.1.1 vs. uniprot
Match: C3YS27_BRAFL (Ataxin-10 (Fragment) n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3YS27_BRAFL)

HSP 1 Score: 80.1 bits (196), Expect = 2.910e-15
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:  418 GRKSDVVRVLANLCFRCQPAQEAVRTLDALPLVLGQCGLDVANPMLREWALLAVRNLCEGNEENQRAIAVLRPAPL 645
            G K D++R+L N+CF+    Q+ VR L+ +PL+L  C +D  NP + +WA+  +RNLCEGN +NQ  IA L    L
Sbjct:    8 GLKRDLIRLLGNMCFQNTSNQDKVRELEGIPLILDHCNIDDHNPYISQWAIFTIRNLCEGNHDNQAVIAGLEDKGL 83
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BLAST of mRNA_P-wetherbeei_contig21033.1.1 vs. uniprot
Match: A0A3M6VRE6_9STRA (Atx10homo_assoc domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VRE6_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 4.370e-15
Identity = 40/83 (48.19%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:  412 PAGRKSDVVRVLANLCFRCQPAQEAVRTLDALPLVLGQCGLDVANPMLREWALLAVRNLCEGNEENQRAIAVLRPAPLVLRGD 660
            P G +S ++RV+ NLCFR    Q+ +R    LPL L  C +D  NP++REW+L+A+RNLCEGNE NQ  I  LRP  +    D
Sbjct:  457 PLGYRSRLIRVIGNLCFRHTYHQDLIRDEGYLPLFLNHCNIDETNPLVREWSLVALRNLCEGNEANQSFINALRPQGMDAASD 539
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BLAST of mRNA_P-wetherbeei_contig21033.1.1 vs. uniprot
Match: A0A8K1CP50_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CP50_PYTOL)

HSP 1 Score: 85.9 bits (211), Expect = 4.380e-15
Identity = 40/78 (51.28%), Postives = 51/78 (65.38%), Query Frame = 1 
Query:  412 PAGRKSDVVRVLANLCFRCQPAQEAVRTLDALPLVLGQCGLDVANPMLREWALLAVRNLCEGNEENQRAIAVLRPAPL 645
            P G +S ++RV+ N+C R +  Q  VR    LPL L  C +D  NP+LREW+L+A+RNLCEGNE NQ  I  LRP  L
Sbjct:  455 PFGYRSAIIRVVGNMCHRQESHQNLVREEGYLPLFLNHCNIDEPNPLLREWSLVALRNLCEGNEANQAYITALRPQGL 532
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21033.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJX9_ECTSI9.220e-2056.25Atx10homo_assoc domain-containing protein n=1 Tax=... [more]
A0A835ZAD7_9STRA1.550e-1953.25Spinocerebellar ataxia type 10 protein domain-cont... [more]
A0A6H5L010_9PHAE4.800e-1958.44Atx10homo_assoc domain-containing protein n=1 Tax=... [more]
L1K366_GUITC3.310e-1753.42Atx10homo_assoc domain-containing protein n=1 Tax=... [more]
A0A2D4BF77_PYTIN1.470e-1648.42Atx10homo_assoc domain-containing protein n=1 Tax=... [more]
M4BGF2_HYAAE6.190e-1654.67Atx10homo_assoc domain-containing protein n=1 Tax=... [more]
A0A662XYY0_9STRA1.230e-1545.92Atx10homo_assoc domain-containing protein n=2 Tax=... [more]
C3YS27_BRAFL2.910e-1544.74Ataxin-10 (Fragment) n=1 Tax=Branchiostoma florida... [more]
A0A3M6VRE6_9STRA4.370e-1548.19Atx10homo_assoc domain-containing protein n=2 Tax=... [more]
A0A8K1CP50_PYTOL4.380e-1551.28Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21033contigP-wetherbeei_contig21033:298..1190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog272952.HpaP805373
PFAMsAtx10homo_assoc
Model size893
Max annot lvl4776|Peronosporales
KEGG koko:K19323
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.88e-05
EggNOG OGsKOG2676@1|root,KOG2676@2759|Eukaryota,3Q73X@4776|Peronosporales
DescriptionSpinocerebellar ataxia type 10 protein domain
Cds size144
COG categoryS
BRITEko00000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186215.2371526-UTR-P-wetherbeei_contig21033:297..8461683186215.2371526-UTR-P-wetherbeei_contig21033:297..846Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig21033 298..846 +
1683186215.2648492-UTR-P-wetherbeei_contig21033:990..11901683186215.2648492-UTR-P-wetherbeei_contig21033:990..1190Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig21033 991..1190 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186215.2507305-CDS-P-wetherbeei_contig21033:846..9901683186215.2507305-CDS-P-wetherbeei_contig21033:846..990Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21033 847..990 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21033.1.1prot_P-wetherbeei_contig21033.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21033 847..990 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21033.1.1

>prot_P-wetherbeei_contig21033.1.1 ID=prot_P-wetherbeei_contig21033.1.1|Name=mRNA_P-wetherbeei_contig21033.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=48bp
MLREWALLAVRNLCEGNEENQRAIAVLRPAPLVLRGDRDGAVVVAPP*
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mRNA from alignment at P-wetherbeei_contig21033:298..1190+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21033.1.1 ID=mRNA_P-wetherbeei_contig21033.1.1|Name=mRNA_P-wetherbeei_contig21033.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=893bp|location=Sequence derived from alignment at P-wetherbeei_contig21033:298..1190+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGGGACGGTGCTCGGCGTGTGCGCAGCGGCAGCGCGGCGCGACGTGGC
GGAGCGGACGCCGTTGGTGCGGCTGTGCGCGGCGCTATTGGCCGGCGCCG
GCGGCGCGCTGCCGGCATCGAGGGCGTCGAAAGCTGCCGCTGCTTCTGCC
ACCGCCGCCACCGCCGCAGCTTCGTCGGTGCGAGGCAACGGCGATGTGGA
CGCTTCACGGGAAGCACTAGCCGTCGGCATTTCGTCGCCGCATTTGGCAG
CCGCGGCGGCCAGAGAAAGCGTGCCGGCGGCTGCCGCGGTAGCCGCAGCA
GCAGAAAGCCGCGCAACTGCAAACGGCACGGCTAGATCCGCAACAGCCGC
GCCGGCTGGCAACGGTGGGGCTACAGCAGCGACGGCGGCAGCGGAGCCCG
AGGCCGCCGCCCCCGCCGGGCGCAAGTCGGACGTCGTGCGTGTGCTGGCC
AACCTGTGCTTCCGCTGTCAGCCGGCGCAGGAAGCCGTACGGACGCTGGA
CGCGCTGCCGCTGGTCCTGGGGCAGTGCGGGCTGGACGTGGCGAACCCGA
TGCTGCGCGAGTGGGCGCTGCTCGCCGTGCGCAACCTCTGCGAGGGTAAC
GAAGAGAACCAGCGGGCCATCGCCGTGCTGCGGCCGGCGCCGCTGGTGCT
GCGGGGGGACAGGGACGGGGCCGTTGTAGTGGCGCCACCGTAGCGGCGGC
GGCGGCGGTGGCGGCGGTGGTGGCGGTTGCGGCAGTGGCAGTGGCCGGCA
GCGGGCGTACCGTCGGCCCGCTGCGGCAGCAGGGACAATTGTGGCGATGG
CTGGAGATTTTCCACCCGTCCAGTGCAGCAGGAGGAGTGACGAACAGCGC
TGGCACCAAGGGGCCCCTTCAGCCTGTGGGATCGAGCATTGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21033:298..1190+

>mRNA_P-wetherbeei_contig21033.1.1 ID=mRNA_P-wetherbeei_contig21033.1.1|Name=mRNA_P-wetherbeei_contig21033.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=144bp|location=Sequence derived from alignment at P-wetherbeei_contig21033:298..1190+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCGCGAGTGGGCGCTGCTCGCCGTGCGCAACCTCTGCGAGGGTAA
CGAAGAGAACCAGCGGGCCATCGCCGTGCTGCGGCCGGCGCCGCTGGTGC
TGCGGGGGGACAGGGACGGGGCCGTTGTAGTGGCGCCACCGTAG
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