mRNA_P-wetherbeei_contig2103.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2103.2.1
Unique NamemRNA_P-wetherbeei_contig2103.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig2103.2.1 vs. uniprot
Match: A0A6H5KID3_9PHAE (Rieske domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KID3_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 2.690e-15
Identity = 55/142 (38.73%), Postives = 69/142 (48.59%), Query Frame = 1 
Query:    1 RLFFMPTDADKPVRAFHRWFDEASEMWREGKGDSGIGGVPYPPGTDRR-LGPIAPREVMLDRYNAHTKXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAAACPRGMLAAALAAGSLGAAVGAVALQRREAKFTFVDYVHAVRD 423
            R F+MPT AD  +RAF +W++             G GG P+  G D   LGP+ PRE +LDR  AHTK                             AA  PRG LA  LAAG+L  A  AVA+ +R+ +F FVDYVH  R+
Sbjct:  484 RTFYMPTQADVTIRAFRKWYNSR-----------GGGGPPWAQGVDPSDLGPVLPREEILDRMVAHTKDCSACGKAYRVSGRVKKAAVGGALLFLTGAAVAPRGALALKLAAGALANAGLAVAMAKRQQEFVFVDYVHYDRE 614
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BLAST of mRNA_P-wetherbeei_contig2103.2.1 vs. uniprot
Match: D7FSH5_ECTSI (Pheophorbide a oxygenase, putative chloroplast n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSH5_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 3.540e-15
Identity = 52/142 (36.62%), Postives = 69/142 (48.59%), Query Frame = 1 
Query:    1 RLFFMPTDADKPVRAFHRWFDEASEMWREGKGDSGIGGVPYPPGTDRR-LGPIAPREVMLDRYNAHTKXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAAACPRGMLAAALAAGSLGAAVGAVALQRREAKFTFVDYVHAVRD 423
            + ++MPT +D PVR F +W+              G  G P+  G D   LGPI PRE +LDR +AHTK                             AAA PRG+L   L  G+L +A  AVA+ +R+ +F F+DYVHA RD
Sbjct:  402 KTYYMPTASDVPVRFFRKWYHSR-----------GGAGPPWAKGVDPADLGPILPREEVLDRMDAHTKDCSACSKAFRVSGAVKRLSAGSTLVLLGAAAAVPRGLLPVGLVGGALASAGLAVAMSKRQQQFVFLDYVHAERD 532
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BLAST of mRNA_P-wetherbeei_contig2103.2.1 vs. uniprot
Match: A0A6H5JEZ2_9PHAE (PaO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEZ2_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 3.690e-14
Identity = 50/142 (35.21%), Postives = 67/142 (47.18%), Query Frame = 1 
Query:    1 RLFFMPTDADKPVRAFHRWFDEASEMWREGKGDSGIGGVPYPPGTD-RRLGPIAPREVMLDRYNAHTKXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAAACPRGMLAAALAAGSLGAAVGAVALQRREAKFTFVDYVHAVRD 423
            + ++MPT +D PVR F +W+              G  G P+    D   LGPI PRE +LDR +AHTK                             AAA PRG+L      G+L +A  AVA+ +R+ +F F+DYVHA RD
Sbjct:  295 KTYYMPTASDVPVRFFRKWYHSR-----------GGAGPPWAKAVDPTHLGPILPREEVLDRMDAHTKDCSACSKAFRVSGAVKRLSAGSTLVLLGAAAAVPRGLLPVGFVGGALASAGLAVAMSKRQQQFVFLDYVHAERD 425
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BLAST of mRNA_P-wetherbeei_contig2103.2.1 vs. uniprot
Match: A0A835YYS4_9STRA (Pheophorbide a oxygenase, putative chloroplast n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYS4_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.220e-7
Identity = 42/139 (30.22%), Postives = 62/139 (44.60%), Query Frame = 1 
Query:   10 FMPTDADKPVRAFHRWFDEASEMWREGKGDSGIGGVPYPPGTDRRLGPIAPREVMLDRYNAHTKXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAAACPRGMLAAALAAGSLGAAVGAVALQRR-EAKFTFVDYVHAVRD 423
            ++PTDAD PVRA+ +W+ +    W  G  D G          D+    + PREV+L+RY+AHTK                           A+AAA P G  A+                Q++ E +F +V+Y+HA+RD
Sbjct:  430 YLPTDADTPVRAWRQWYQKNKIQWACGVEDRG---------GDKEA--VPPREVLLERYHAHTKHCSACRAALAATRKKRKLSLGAAAVLLAIAAALPGGTRASXXXXXXXXXXXXXXXRQQQHEREFHYVEYIHAMRD 557
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BLAST of mRNA_P-wetherbeei_contig2103.2.1 vs. uniprot
Match: A0A2V0NV59_9CHLO (Rieske domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NV59_9CHLO)

HSP 1 Score: 54.7 bits (130), Expect = 6.580e-6
Identity = 46/162 (28.40%), Postives = 61/162 (37.65%), Query Frame = 1 
Query:    7 FFMPTDADKPVRAFHRWFDEASEMWREGKGDSGIGGVPYPPGTDRRLGPIAPREVMLDRYNAHTKXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAA--------------------------ACPRGMLAAALAAGSLGAAVGAVALQRREAKFTFVDYVHA 414
            F++P  AD  +  F  W D+            G G +P+P GTD RLGP  PREV++DR+  H +                            V A                          A P G+   ALAA +L   +   ALQR  ++F F DYVHA
Sbjct:  405 FYLPATADTGIITFRTWMDQV-----------GGGSIPWPLGTDARLGPALPREVVMDRWAQHCRHCKSCRRAVTWIERLRAACTAAAAVAAPVGAFALLXXXXXXXXXXXXXXXXXXXXXPAAPLGLACLALAAAAL---LARRALQRLWSRFHFTDYVHA 552
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2103.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KID3_9PHAE2.690e-1538.73Rieske domain-containing protein n=2 Tax=Ectocarpu... [more]
D7FSH5_ECTSI3.540e-1536.62Pheophorbide a oxygenase, putative chloroplast n=1... [more]
A0A6H5JEZ2_9PHAE3.690e-1435.21PaO domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YYS4_9STRA2.220e-730.22Pheophorbide a oxygenase, putative chloroplast n=1... [more]
A0A2V0NV59_9CHLO6.580e-628.40Rieske domain-containing protein n=1 Tax=Raphidoce... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2103contigP-wetherbeei_contig2103:2697..3449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FSH5
Preferred namePAO
PFAMsPaO,Rieske
Model size429
Max annot lvl2759|Eukaryota
KEGG rclassRC03394
KEGG koko:K13071
KEGG ReactionR08921
KEGG Pathwayko00860,ko01110,map00860,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0002376,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006787,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0007275,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009507,GO:0009526,GO:0009528,GO:0009534,GO:0009536,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009706,GO:0009791,GO:0009814,GO:0009816,GO:0009908,GO:0009941,GO:0009987,GO:0010154,GO:0015994,GO:0015996,GO:0016020,GO:0016491,GO:0016730,GO:0019439,GO:0019866,GO:0022414,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0031976,GO:0031984,GO:0032441,GO:0032501,GO:0032502,GO:0033013,GO:0033015,GO:0034641,GO:0042170,GO:0042440,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044248,GO:0044270,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0046149,GO:0046483,GO:0046700,GO:0048037,GO:0048367,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051186,GO:0051187,GO:0051536,GO:0051540,GO:0051704,GO:0051707,GO:0055114,GO:0061458,GO:0071704,GO:0090567,GO:0098542,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575
Exons2
Evalue2.4e-15
EggNOG OGsCOG4638@1|root,2QQ8U@2759|Eukaryota
EC1.14.15.17
Descriptionpheophorbide a oxygenase activity
Cds size417
COG categoryP
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186215.1080558-CDS-P-wetherbeei_contig2103:2696..30141683186215.1080558-CDS-P-wetherbeei_contig2103:2696..3014Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2103 2697..3014 -
1683186215.120262-CDS-P-wetherbeei_contig2103:3338..34371683186215.120262-CDS-P-wetherbeei_contig2103:3338..3437Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2103 3339..3437 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186215.1306443-UTR-P-wetherbeei_contig2103:3437..34491683186215.1306443-UTR-P-wetherbeei_contig2103:3437..3449Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2103 3438..3449 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2103.2.1prot_P-wetherbeei_contig2103.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2103 2697..3437 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2103.2.1

>prot_P-wetherbeei_contig2103.2.1 ID=prot_P-wetherbeei_contig2103.2.1|Name=mRNA_P-wetherbeei_contig2103.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=139bp
MPTDADKPVRAFHRWFDEASEMWREGKGDSGIGGVPYPPGTDRRLGPIAP
REVMLDRYNAHTKHCKTCSGALARLRRARDATAAAAVGAVAVAAACPRGM
LAAALAAGSLGAAVGAVALQRREAKFTFVDYVHAVRDN*
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mRNA from alignment at P-wetherbeei_contig2103:2697..3449-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2103.2.1 ID=mRNA_P-wetherbeei_contig2103.2.1|Name=mRNA_P-wetherbeei_contig2103.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=753bp|location=Sequence derived from alignment at P-wetherbeei_contig2103:2697..3449- (Phaeothamnion wetherbeei SAG_119_79)
CGGCTGTTCTTCATGCCGACGGACGCCGACAAGCCCGTTCGCGCTTTCCA
TCGCTGGTTTGACGAGGCGAGCGAGATGTGGCGGGAAGGAAAGGGGGACA
GCGGGATTGGTGTCGCCCAGCGTTAGTCTGAAAAGAAACGGTCGGCTGTT
TGGTTCTGCTGCCTGTGCTTTTCCTTGGTTGCACCTTTTTCAGGGTTCGT
GAGTGTGTTCTTGGAACTTTTCAATCCTGCCGCGGCGAGCGTTGTTATGT
TGGAAGCGGGCCAGACTTGTAAGGCACCAGTTGTTCCGGAGGCATTTATG
AGAGAAGAAAGGGGGAAATTTATTCAATTTCAACCCCTTCTTTTCCCCGC
TCTCACCCGTCGGCCCGCCAGCCTCTGACTCCTCGCCGTCGCCTCGCCGT
CCCTTCCACAACCACTGCCGCAGGCGGCGCCGGAGGGCGTGCCGTACCCG
CCGGGCACCGACCGCCGCCTGGGGCCCATTGCGCCCCGCGAGGTGATGCT
GGACCGTTACAACGCGCACACCAAGCACTGCAAGACTTGCTCCGGGGCGC
TGGCCCGACTGCGTCGCGCCCGCGACGCGACGGCGGCAGCGGCGGTGGGC
GCGGTGGCGGTGGCGGCCGCCTGCCCGCGGGGCATGCTCGCAGCGGCGCT
GGCGGCGGGCAGCTTGGGGGCGGCGGTCGGGGCGGTGGCGCTGCAGCGGC
GCGAGGCCAAGTTCACCTTTGTGGATTACGTTCATGCGGTGAGGGACAAT
TAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2103:2697..3449-

>mRNA_P-wetherbeei_contig2103.2.1 ID=mRNA_P-wetherbeei_contig2103.2.1|Name=mRNA_P-wetherbeei_contig2103.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig2103:2697..3449- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGACGGACGCCGACAAGCCCGTTCGCGCTTTCCATCGCTGGTTTGA
CGAGGCGAGCGAGATGTGGCGGGAAGGAAAGGGGGACAGCGGGATTGGTG
GCGTGCCGTACCCGCCGGGCACCGACCGCCGCCTGGGGCCCATTGCGCCC
CGCGAGGTGATGCTGGACCGTTACAACGCGCACACCAAGCACTGCAAGAC
TTGCTCCGGGGCGCTGGCCCGACTGCGTCGCGCCCGCGACGCGACGGCGG
CAGCGGCGGTGGGCGCGGTGGCGGTGGCGGCCGCCTGCCCGCGGGGCATG
CTCGCAGCGGCGCTGGCGGCGGGCAGCTTGGGGGCGGCGGTCGGGGCGGT
GGCGCTGCAGCGGCGCGAGGCCAAGTTCACCTTTGTGGATTACGTTCATG
CGGTGAGGGACAATTAA
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